Strain Fitness in Shewanella oneidensis MR-1 around SO0321

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0320 and SO0321 are separated by 96 nucleotidesSO0321 and SO0322 are separated by 99 nucleotidesSO0322 and SO0323 are separated by 138 nucleotides SO0320: SO0320 - conserved domain protein (NCBI ptt file), at 326,595 to 327,602 SO0320 SO0321: SO0321 - hypothetical protein (NCBI ptt file), at 327,699 to 328,301 SO0321 SO0322: SO0322 - hypothetical protein (NCBI ptt file), at 328,401 to 328,982 SO0322 SO0323: SO0323 - hypothetical protein (NCBI ptt file), at 329,121 to 330,053 SO0323 Position (kb) 327 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 326.823 kb on + strand, within SO0320at 326.823 kb on + strand, within SO0320at 326.846 kb on - strand, within SO0320at 326.846 kb on - strand, within SO0320at 326.848 kb on + strand, within SO0320at 326.870 kb on + strand, within SO0320at 326.883 kb on - strand, within SO0320at 326.918 kb on + strand, within SO0320at 326.935 kb on + strand, within SO0320at 326.935 kb on + strand, within SO0320at 327.042 kb on - strand, within SO0320at 327.053 kb on + strand, within SO0320at 327.079 kb on + strand, within SO0320at 327.082 kb on - strand, within SO0320at 327.087 kb on - strand, within SO0320at 327.088 kb on + strand, within SO0320at 327.106 kb on - strand, within SO0320at 327.109 kb on - strand, within SO0320at 327.109 kb on - strand, within SO0320at 327.221 kb on + strand, within SO0320at 327.221 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.226 kb on + strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.229 kb on - strand, within SO0320at 327.231 kb on + strand, within SO0320at 327.361 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.431 kb on + strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.439 kb on - strand, within SO0320at 327.483 kb on - strand, within SO0320at 327.621 kb on + strandat 327.629 kb on - strandat 327.834 kb on + strand, within SO0321at 327.931 kb on - strand, within SO0321at 327.957 kb on + strand, within SO0321at 327.976 kb on - strand, within SO0321at 328.157 kb on - strand, within SO0321at 328.212 kb on + strand, within SO0321at 328.268 kb on + strandat 328.308 kb on - strandat 328.474 kb on + strand, within SO0322at 328.505 kb on - strand, within SO0322at 328.530 kb on + strand, within SO0322at 328.538 kb on - strand, within SO0322at 328.538 kb on - strand, within SO0322at 328.540 kb on + strand, within SO0322at 328.598 kb on + strand, within SO0322at 328.643 kb on - strandat 328.661 kb on + strand, within SO0322at 328.686 kb on + strand, within SO0322at 328.689 kb on - strand, within SO0322at 328.689 kb on - strand, within SO0322at 328.694 kb on - strand, within SO0322at 328.743 kb on + strand, within SO0322at 328.743 kb on + strand, within SO0322at 328.751 kb on - strand, within SO0322at 328.753 kb on + strand, within SO0322at 328.894 kb on + strand, within SO0322at 328.894 kb on + strand, within SO0322at 328.945 kb on - strandat 328.947 kb on + strandat 328.965 kb on + strandat 328.965 kb on - strandat 329.013 kb on + strandat 329.018 kb on + strandat 329.018 kb on + strandat 329.026 kb on - strandat 329.026 kb on - strandat 329.041 kb on + strandat 329.041 kb on + strandat 329.041 kb on + strandat 329.041 kb on + strandat 329.041 kb on + strandat 329.049 kb on - strandat 329.049 kb on - strandat 329.049 kb on - strandat 329.049 kb on - strandat 329.059 kb on - strandat 329.207 kb on + strandat 329.207 kb on + strandat 329.215 kb on - strand, within SO0323at 329.242 kb on + strand, within SO0323at 329.242 kb on + strand, within SO0323at 329.297 kb on + strand, within SO0323at 329.297 kb on + strand, within SO0323at 329.297 kb on + strand, within SO0323

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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326,823 + SO0320 0.23 -1.7
326,823 + SO0320 0.23 -0.0
326,846 - SO0320 0.25 -1.1
326,846 - SO0320 0.25 -1.4
326,848 + SO0320 0.25 -2.0
326,870 + SO0320 0.27 -1.0
326,883 - SO0320 0.29 -1.4
326,918 + SO0320 0.32 -2.3
326,935 + SO0320 0.34 -1.3
326,935 + SO0320 0.34 -2.4
327,042 - SO0320 0.44 -0.6
327,053 + SO0320 0.45 -1.1
327,079 + SO0320 0.48 -1.9
327,082 - SO0320 0.48 -0.6
327,087 - SO0320 0.49 -1.4
327,088 + SO0320 0.49 -1.2
327,106 - SO0320 0.51 -2.4
327,109 - SO0320 0.51 -1.6
327,109 - SO0320 0.51 -1.4
327,221 + SO0320 0.62 -0.3
327,221 + SO0320 0.62 -1.7
327,226 + SO0320 0.63 -1.4
327,226 + SO0320 0.63 -1.5
327,226 + SO0320 0.63 -2.1
327,229 - SO0320 0.63 -2.3
327,229 - SO0320 0.63 -1.9
327,229 - SO0320 0.63 -2.0
327,229 - SO0320 0.63 -1.6
327,231 + SO0320 0.63 -2.2
327,361 + SO0320 0.76 -1.0
327,431 + SO0320 0.83 -1.8
327,431 + SO0320 0.83 -1.6
327,431 + SO0320 0.83 -1.1
327,431 + SO0320 0.83 -1.8
327,439 - SO0320 0.84 -0.4
327,439 - SO0320 0.84 -2.3
327,439 - SO0320 0.84 -0.8
327,483 - SO0320 0.88 -1.5
327,621 + -0.3
327,629 - -0.9
327,834 + SO0321 0.22 +1.1
327,931 - SO0321 0.38 +0.6
327,957 + SO0321 0.43 +0.8
327,976 - SO0321 0.46 +0.3
328,157 - SO0321 0.76 +0.0
328,212 + SO0321 0.85 -0.1
328,268 + -0.3
328,308 - -0.2
328,474 + SO0322 0.13 -0.6
328,505 - SO0322 0.18 -0.3
328,530 + SO0322 0.22 -0.1
328,538 - SO0322 0.24 -0.0
328,538 - SO0322 0.24 -0.8
328,540 + SO0322 0.24 +0.7
328,598 + SO0322 0.34 +2.6
328,643 - +3.8
328,661 + SO0322 0.45 +0.5
328,686 + SO0322 0.49 -0.6
328,689 - SO0322 0.49 +1.5
328,689 - SO0322 0.49 -0.0
328,694 - SO0322 0.50 +1.0
328,743 + SO0322 0.59 -0.2
328,743 + SO0322 0.59 -2.8
328,751 - SO0322 0.60 +1.4
328,753 + SO0322 0.60 +0.3
328,894 + SO0322 0.85 +0.6
328,894 + SO0322 0.85 -0.2
328,945 - -0.1
328,947 + +0.1
328,965 + +0.3
328,965 - -1.5
329,013 + +0.2
329,018 + -0.2
329,018 + +0.6
329,026 - +2.0
329,026 - +1.3
329,041 + +0.0
329,041 + +0.0
329,041 + +0.5
329,041 + +0.0
329,041 + -0.4
329,049 - +0.6
329,049 - +0.3
329,049 - -0.3
329,049 - +0.1
329,059 - -0.5
329,207 + +0.2
329,207 + +0.2
329,215 - SO0323 0.10 -1.0
329,242 + SO0323 0.13 +0.5
329,242 + SO0323 0.13 +0.0
329,297 + SO0323 0.19 +0.1
329,297 + SO0323 0.19 -0.7
329,297 + SO0323 0.19 -0.5

Or see this region's nucleotide sequence