Experiment: acetate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0194 and ybbB are separated by 77 nucleotides ybbB and selD overlap by 1 nucleotides
SO0194: SO0194 - acyltransferase family protein (NCBI ptt file), at 203,016 to 204,878
SO0194
SO0195: ybbB - ybbB protein (NCBI ptt file), at 204,956 to 206,086
ybbB
SO0196: selD - selenide, water dikinase (NCBI ptt file), at 206,086 to 207,144
selD
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.063 kb on + strand, within SO0194 at 204.075 kb on + strand, within SO0194 at 204.097 kb on + strand, within SO0194 at 204.103 kb on - strand, within SO0194 at 204.143 kb on + strand, within SO0194 at 204.143 kb on + strand, within SO0194 at 204.187 kb on - strand, within SO0194 at 204.315 kb on - strand, within SO0194 at 204.349 kb on - strand, within SO0194 at 204.410 kb on - strand, within SO0194 at 204.522 kb on + strand, within SO0194 at 204.575 kb on - strand, within SO0194 at 204.586 kb on - strand, within SO0194 at 204.741 kb on - strand at 204.778 kb on + strand at 204.812 kb on - strand at 204.828 kb on + strand at 204.838 kb on + strand at 204.846 kb on - strand at 204.858 kb on + strand at 204.938 kb on + strand at 204.943 kb on + strand at 204.946 kb on - strand at 204.953 kb on - strand at 204.978 kb on + strand at 205.015 kb on - strand at 205.113 kb on - strand, within ybbB at 205.153 kb on - strand, within ybbB at 205.229 kb on - strand, within ybbB at 205.344 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.438 kb on - strand, within ybbB at 205.483 kb on - strand, within ybbB at 205.566 kb on + strand, within ybbB at 205.598 kb on - strand, within ybbB at 205.632 kb on + strand, within ybbB at 205.650 kb on - strand, within ybbB at 205.728 kb on - strand, within ybbB at 205.786 kb on + strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.883 kb on + strand, within ybbB at 205.891 kb on - strand, within ybbB at 205.891 kb on - strand, within ybbB at 206.113 kb on + strand at 206.119 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.232 kb on - strand, within selD at 206.232 kb on - strand, within selD at 206.336 kb on - strand, within selD at 206.391 kb on + strand, within selD at 206.399 kb on - strand, within selD at 206.403 kb on + strand, within selD at 206.431 kb on + strand, within selD at 206.438 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.666 kb on + strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.743 kb on + strand, within selD at 206.751 kb on - strand, within selD at 206.962 kb on + strand, within selD at 206.966 kb on - strand, within selD
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 50 mM remove 204,063 + SO0194 0.56 -0.3 204,075 + SO0194 0.57 +0.2 204,097 + SO0194 0.58 +0.2 204,103 - SO0194 0.58 -0.4 204,143 + SO0194 0.60 -0.7 204,143 + SO0194 0.60 +0.1 204,187 - SO0194 0.63 +0.1 204,315 - SO0194 0.70 +0.2 204,349 - SO0194 0.72 +1.3 204,410 - SO0194 0.75 +0.7 204,522 + SO0194 0.81 -0.1 204,575 - SO0194 0.84 +1.1 204,586 - SO0194 0.84 +0.8 204,741 - +0.0 204,778 + +1.1 204,812 - +0.2 204,828 + +1.3 204,838 + -0.0 204,846 - -0.3 204,858 + -1.4 204,938 + -0.1 204,943 + +0.1 204,946 - -0.4 204,953 - +0.0 204,978 + -0.1 205,015 - +0.4 205,113 - ybbB SO0195 0.14 -0.4 205,153 - ybbB SO0195 0.17 +0.1 205,229 - ybbB SO0195 0.24 -0.7 205,344 - ybbB SO0195 0.34 -0.9 205,416 - ybbB SO0195 0.41 +0.3 205,416 - ybbB SO0195 0.41 -1.3 205,438 - ybbB SO0195 0.43 +0.8 205,483 - ybbB SO0195 0.47 -0.7 205,566 + ybbB SO0195 0.54 -0.3 205,598 - ybbB SO0195 0.57 -0.3 205,632 + ybbB SO0195 0.60 -0.2 205,650 - ybbB SO0195 0.61 +0.2 205,728 - ybbB SO0195 0.68 -0.0 205,786 + ybbB SO0195 0.73 -0.2 205,809 - ybbB SO0195 0.75 -0.4 205,809 - ybbB SO0195 0.75 -1.1 205,883 + ybbB SO0195 0.82 +0.0 205,891 - ybbB SO0195 0.83 -0.1 205,891 - ybbB SO0195 0.83 +0.7 206,113 + -0.3 206,119 - +0.4 206,121 - -0.2 206,121 - -0.4 206,121 - -0.3 206,121 - +0.1 206,159 + +0.4 206,159 + -0.1 206,159 + +0.1 206,159 + -0.7 206,167 - -0.1 206,167 - +0.1 206,167 - -0.7 206,167 - -0.2 206,167 - -0.1 206,167 - +0.2 206,224 + selD SO0196 0.13 +1.3 206,224 + selD SO0196 0.13 -0.1 206,224 + selD SO0196 0.13 -0.3 206,224 + selD SO0196 0.13 -1.3 206,232 - selD SO0196 0.14 +0.2 206,232 - selD SO0196 0.14 -0.8 206,336 - selD SO0196 0.24 -0.2 206,391 + selD SO0196 0.29 -1.4 206,399 - selD SO0196 0.30 -0.1 206,403 + selD SO0196 0.30 -0.2 206,431 + selD SO0196 0.33 -0.3 206,438 - selD SO0196 0.33 -0.3 206,439 - selD SO0196 0.33 -0.8 206,439 - selD SO0196 0.33 -0.0 206,465 + selD SO0196 0.36 -0.5 206,465 + selD SO0196 0.36 -0.3 206,465 + selD SO0196 0.36 +0.9 206,666 + selD SO0196 0.55 -0.6 206,674 - selD SO0196 0.56 -0.9 206,674 - selD SO0196 0.56 +0.8 206,674 - selD SO0196 0.56 +0.6 206,674 - selD SO0196 0.56 +0.1 206,674 - selD SO0196 0.56 +0.2 206,743 + selD SO0196 0.62 -1.2 206,751 - selD SO0196 0.63 -0.3 206,962 + selD SO0196 0.83 +0.5 206,966 - selD SO0196 0.83 -0.0
Or see this region's nucleotide sequence