Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03045 and HMPREF1058_RS03040 overlap by 4 nucleotides HMPREF1058_RS03040 and HMPREF1058_RS21675 are separated by 20 nucleotides HMPREF1058_RS21675 and HMPREF1058_RS21680 are separated by 65 nucleotides
HMPREF1058_RS03045: HMPREF1058_RS03045 - hypothetical protein, at 23,808 to 24,461
_RS03045
HMPREF1058_RS03040: HMPREF1058_RS03040 - thioredoxin family protein, at 24,458 to 24,967
_RS03040
HMPREF1058_RS21675: HMPREF1058_RS21675 - hypothetical protein, at 24,988 to 26,148
_RS21675
HMPREF1058_RS21680: HMPREF1058_RS21680 - ATP-binding cassette domain-containing protein, at 26,214 to 27,101
_RS21680
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 24.028 kb on + strand, within HMPREF1058_RS03045 at 24.029 kb on - strand, within HMPREF1058_RS03045 at 24.043 kb on - strand, within HMPREF1058_RS03045 at 24.046 kb on + strand, within HMPREF1058_RS03045 at 24.053 kb on + strand, within HMPREF1058_RS03045 at 24.053 kb on + strand, within HMPREF1058_RS03045 at 24.054 kb on - strand, within HMPREF1058_RS03045 at 24.054 kb on - strand, within HMPREF1058_RS03045 at 24.056 kb on - strand, within HMPREF1058_RS03045 at 24.063 kb on + strand, within HMPREF1058_RS03045 at 24.075 kb on - strand, within HMPREF1058_RS03045 at 24.076 kb on + strand, within HMPREF1058_RS03045 at 24.077 kb on - strand, within HMPREF1058_RS03045 at 24.077 kb on - strand, within HMPREF1058_RS03045 at 24.077 kb on - strand, within HMPREF1058_RS03045 at 24.080 kb on - strand, within HMPREF1058_RS03045 at 24.082 kb on + strand, within HMPREF1058_RS03045 at 24.133 kb on + strand, within HMPREF1058_RS03045 at 24.218 kb on - strand, within HMPREF1058_RS03045 at 24.236 kb on - strand, within HMPREF1058_RS03045 at 24.253 kb on + strand, within HMPREF1058_RS03045 at 24.254 kb on - strand, within HMPREF1058_RS03045 at 24.257 kb on + strand, within HMPREF1058_RS03045 at 24.302 kb on - strand, within HMPREF1058_RS03045 at 24.302 kb on - strand, within HMPREF1058_RS03045 at 24.328 kb on + strand, within HMPREF1058_RS03045 at 24.346 kb on + strand, within HMPREF1058_RS03045 at 24.347 kb on - strand, within HMPREF1058_RS03045 at 24.372 kb on - strand, within HMPREF1058_RS03045 at 24.396 kb on + strand at 24.422 kb on + strand at 24.422 kb on + strand at 24.434 kb on - strand at 24.445 kb on + strand at 24.445 kb on + strand at 24.446 kb on - strand at 24.446 kb on - strand at 24.449 kb on + strand at 24.450 kb on - strand at 24.455 kb on - strand at 24.467 kb on + strand at 24.471 kb on + strand at 24.495 kb on + strand at 24.517 kb on + strand, within HMPREF1058_RS03040 at 24.517 kb on + strand, within HMPREF1058_RS03040 at 24.518 kb on - strand, within HMPREF1058_RS03040 at 24.520 kb on - strand, within HMPREF1058_RS03040 at 24.626 kb on + strand, within HMPREF1058_RS03040 at 24.626 kb on + strand, within HMPREF1058_RS03040 at 24.626 kb on + strand, within HMPREF1058_RS03040 at 24.632 kb on - strand, within HMPREF1058_RS03040 at 24.632 kb on - strand, within HMPREF1058_RS03040 at 24.685 kb on + strand, within HMPREF1058_RS03040 at 24.752 kb on - strand, within HMPREF1058_RS03040 at 24.752 kb on - strand, within HMPREF1058_RS03040 at 24.760 kb on - strand, within HMPREF1058_RS03040 at 24.787 kb on - strand, within HMPREF1058_RS03040 at 24.787 kb on - strand, within HMPREF1058_RS03040 at 24.798 kb on + strand, within HMPREF1058_RS03040 at 24.822 kb on + strand, within HMPREF1058_RS03040 at 24.823 kb on - strand, within HMPREF1058_RS03040 at 24.823 kb on - strand, within HMPREF1058_RS03040 at 24.828 kb on + strand, within HMPREF1058_RS03040 at 24.864 kb on + strand, within HMPREF1058_RS03040 at 24.865 kb on - strand, within HMPREF1058_RS03040 at 24.877 kb on + strand, within HMPREF1058_RS03040 at 24.878 kb on - strand, within HMPREF1058_RS03040 at 24.878 kb on - strand, within HMPREF1058_RS03040 at 24.878 kb on - strand, within HMPREF1058_RS03040 at 24.887 kb on - strand, within HMPREF1058_RS03040 at 24.887 kb on - strand, within HMPREF1058_RS03040 at 24.888 kb on + strand, within HMPREF1058_RS03040 at 24.891 kb on - strand, within HMPREF1058_RS03040 at 24.979 kb on + strand at 25.022 kb on + strand at 25.023 kb on - strand at 25.061 kb on + strand at 25.061 kb on + strand at 25.062 kb on - strand at 25.065 kb on + strand at 25.075 kb on + strand at 25.078 kb on + strand at 25.078 kb on + strand at 25.218 kb on - strand, within HMPREF1058_RS21675 at 25.254 kb on - strand, within HMPREF1058_RS21675 at 25.276 kb on + strand, within HMPREF1058_RS21675 at 25.276 kb on + strand, within HMPREF1058_RS21675 at 25.277 kb on - strand, within HMPREF1058_RS21675 at 25.277 kb on - strand, within HMPREF1058_RS21675 at 25.277 kb on - strand, within HMPREF1058_RS21675 at 25.277 kb on - strand, within HMPREF1058_RS21675 at 25.277 kb on - strand, within HMPREF1058_RS21675 at 25.345 kb on + strand, within HMPREF1058_RS21675 at 25.393 kb on - strand, within HMPREF1058_RS21675 at 25.466 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.500 kb on + strand, within HMPREF1058_RS21675 at 25.501 kb on - strand, within HMPREF1058_RS21675 at 25.501 kb on - strand, within HMPREF1058_RS21675 at 25.501 kb on - strand, within HMPREF1058_RS21675 at 25.501 kb on - strand, within HMPREF1058_RS21675 at 25.540 kb on - strand, within HMPREF1058_RS21675 at 25.584 kb on + strand, within HMPREF1058_RS21675 at 25.669 kb on + strand, within HMPREF1058_RS21675 at 25.669 kb on + strand, within HMPREF1058_RS21675 at 25.671 kb on + strand, within HMPREF1058_RS21675 at 25.672 kb on - strand, within HMPREF1058_RS21675 at 25.705 kb on - strand, within HMPREF1058_RS21675 at 25.705 kb on - strand, within HMPREF1058_RS21675 at 25.724 kb on - strand, within HMPREF1058_RS21675 at 25.724 kb on - strand, within HMPREF1058_RS21675 at 25.801 kb on - strand, within HMPREF1058_RS21675 at 25.860 kb on - strand, within HMPREF1058_RS21675 at 25.894 kb on + strand, within HMPREF1058_RS21675 at 25.908 kb on - strand, within HMPREF1058_RS21675 at 25.958 kb on + strand, within HMPREF1058_RS21675 at 25.960 kb on + strand, within HMPREF1058_RS21675 at 25.961 kb on - strand, within HMPREF1058_RS21675 at 25.961 kb on - strand, within HMPREF1058_RS21675 at 25.962 kb on + strand, within HMPREF1058_RS21675 at 25.962 kb on + strand, within HMPREF1058_RS21675 at 25.962 kb on + strand, within HMPREF1058_RS21675 at 25.989 kb on + strand, within HMPREF1058_RS21675 at 26.006 kb on - strand, within HMPREF1058_RS21675 at 26.035 kb on - strand at 26.048 kb on + strand at 26.053 kb on - strand at 26.105 kb on + strand at 26.106 kb on - strand at 26.106 kb on - strand at 26.108 kb on - strand at 26.108 kb on - strand at 26.138 kb on + strand at 26.139 kb on - strand at 26.143 kb on + strand at 26.143 kb on + strand at 26.144 kb on - strand at 26.396 kb on + strand, within HMPREF1058_RS21680 at 26.432 kb on - strand, within HMPREF1058_RS21680 at 26.533 kb on - strand, within HMPREF1058_RS21680 at 26.688 kb on - strand, within HMPREF1058_RS21680 at 26.701 kb on - strand, within HMPREF1058_RS21680 at 26.702 kb on + strand, within HMPREF1058_RS21680 at 26.703 kb on - strand, within HMPREF1058_RS21680 at 26.705 kb on + strand, within HMPREF1058_RS21680 at 26.707 kb on + strand, within HMPREF1058_RS21680 at 26.739 kb on + strand, within HMPREF1058_RS21680 at 26.739 kb on + strand, within HMPREF1058_RS21680 at 26.740 kb on - strand, within HMPREF1058_RS21680 at 26.740 kb on - strand, within HMPREF1058_RS21680 at 26.768 kb on + strand, within HMPREF1058_RS21680 at 26.769 kb on - strand, within HMPREF1058_RS21680 at 26.861 kb on + strand, within HMPREF1058_RS21680 at 26.861 kb on + strand, within HMPREF1058_RS21680 at 26.923 kb on + strand, within HMPREF1058_RS21680 at 26.981 kb on - strand, within HMPREF1058_RS21680 at 27.068 kb on + strand at 27.069 kb on - strand at 27.069 kb on - strand at 27.072 kb on + strand at 27.072 kb on + strand at 27.073 kb on - strand at 27.073 kb on - strand at 27.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 remove 24,028 + HMPREF1058_RS03045 0.34 -2.9 24,029 - HMPREF1058_RS03045 0.34 -0.1 24,043 - HMPREF1058_RS03045 0.36 +0.5 24,046 + HMPREF1058_RS03045 0.36 -1.7 24,053 + HMPREF1058_RS03045 0.37 -0.5 24,053 + HMPREF1058_RS03045 0.37 +0.5 24,054 - HMPREF1058_RS03045 0.38 -1.1 24,054 - HMPREF1058_RS03045 0.38 +0.6 24,056 - HMPREF1058_RS03045 0.38 -0.3 24,063 + HMPREF1058_RS03045 0.39 -2.4 24,075 - HMPREF1058_RS03045 0.41 -1.1 24,076 + HMPREF1058_RS03045 0.41 -1.4 24,077 - HMPREF1058_RS03045 0.41 -1.7 24,077 - HMPREF1058_RS03045 0.41 -0.2 24,077 - HMPREF1058_RS03045 0.41 -1.6 24,080 - HMPREF1058_RS03045 0.42 -0.1 24,082 + HMPREF1058_RS03045 0.42 -2.7 24,133 + HMPREF1058_RS03045 0.50 +1.5 24,218 - HMPREF1058_RS03045 0.63 -2.7 24,236 - HMPREF1058_RS03045 0.65 +0.6 24,253 + HMPREF1058_RS03045 0.68 -0.6 24,254 - HMPREF1058_RS03045 0.68 -0.8 24,257 + HMPREF1058_RS03045 0.69 -0.5 24,302 - HMPREF1058_RS03045 0.76 +1.6 24,302 - HMPREF1058_RS03045 0.76 -0.5 24,328 + HMPREF1058_RS03045 0.80 -0.9 24,346 + HMPREF1058_RS03045 0.82 +1.2 24,347 - HMPREF1058_RS03045 0.82 -0.4 24,372 - HMPREF1058_RS03045 0.86 -1.7 24,396 + -2.9 24,422 + +0.0 24,422 + -0.4 24,434 - +1.4 24,445 + +2.4 24,445 + +0.1 24,446 - +0.8 24,446 - -2.2 24,449 + -0.3 24,450 - +0.9 24,455 - -1.1 24,467 + -0.4 24,471 + +1.5 24,495 + -0.2 24,517 + HMPREF1058_RS03040 0.12 -2.1 24,517 + HMPREF1058_RS03040 0.12 -0.8 24,518 - HMPREF1058_RS03040 0.12 +0.7 24,520 - HMPREF1058_RS03040 0.12 +3.6 24,626 + HMPREF1058_RS03040 0.33 +2.2 24,626 + HMPREF1058_RS03040 0.33 +0.4 24,626 + HMPREF1058_RS03040 0.33 +2.5 24,632 - HMPREF1058_RS03040 0.34 +0.1 24,632 - HMPREF1058_RS03040 0.34 +0.3 24,685 + HMPREF1058_RS03040 0.45 -0.2 24,752 - HMPREF1058_RS03040 0.58 -0.7 24,752 - HMPREF1058_RS03040 0.58 +2.2 24,760 - HMPREF1058_RS03040 0.59 -0.1 24,787 - HMPREF1058_RS03040 0.65 -1.7 24,787 - HMPREF1058_RS03040 0.65 +0.8 24,798 + HMPREF1058_RS03040 0.67 -2.1 24,822 + HMPREF1058_RS03040 0.71 -1.7 24,823 - HMPREF1058_RS03040 0.72 +0.3 24,823 - HMPREF1058_RS03040 0.72 +0.9 24,828 + HMPREF1058_RS03040 0.73 +3.1 24,864 + HMPREF1058_RS03040 0.80 -1.3 24,865 - HMPREF1058_RS03040 0.80 -0.2 24,877 + HMPREF1058_RS03040 0.82 -1.4 24,878 - HMPREF1058_RS03040 0.82 +1.8 24,878 - HMPREF1058_RS03040 0.82 -3.5 24,878 - HMPREF1058_RS03040 0.82 -0.8 24,887 - HMPREF1058_RS03040 0.84 +0.3 24,887 - HMPREF1058_RS03040 0.84 +1.2 24,888 + HMPREF1058_RS03040 0.84 +2.7 24,891 - HMPREF1058_RS03040 0.85 +1.4 24,979 + +0.9 25,022 + +0.6 25,023 - +1.6 25,061 + -0.9 25,061 + +1.2 25,062 - +2.0 25,065 + -2.4 25,075 + +3.3 25,078 + +1.3 25,078 + -0.1 25,218 - HMPREF1058_RS21675 0.20 +1.2 25,254 - HMPREF1058_RS21675 0.23 -0.9 25,276 + HMPREF1058_RS21675 0.25 +0.3 25,276 + HMPREF1058_RS21675 0.25 +2.5 25,277 - HMPREF1058_RS21675 0.25 -2.1 25,277 - HMPREF1058_RS21675 0.25 +1.3 25,277 - HMPREF1058_RS21675 0.25 +0.9 25,277 - HMPREF1058_RS21675 0.25 -0.8 25,277 - HMPREF1058_RS21675 0.25 +2.3 25,345 + HMPREF1058_RS21675 0.31 +1.6 25,393 - HMPREF1058_RS21675 0.35 +0.5 25,466 + HMPREF1058_RS21675 0.41 +0.1 25,500 + HMPREF1058_RS21675 0.44 -0.6 25,500 + HMPREF1058_RS21675 0.44 -1.8 25,500 + HMPREF1058_RS21675 0.44 +0.7 25,500 + HMPREF1058_RS21675 0.44 +1.0 25,500 + HMPREF1058_RS21675 0.44 +1.9 25,500 + HMPREF1058_RS21675 0.44 -3.2 25,501 - HMPREF1058_RS21675 0.44 +1.7 25,501 - HMPREF1058_RS21675 0.44 -2.2 25,501 - HMPREF1058_RS21675 0.44 +1.2 25,501 - HMPREF1058_RS21675 0.44 -0.3 25,540 - HMPREF1058_RS21675 0.48 +0.2 25,584 + HMPREF1058_RS21675 0.51 +0.3 25,669 + HMPREF1058_RS21675 0.59 -0.1 25,669 + HMPREF1058_RS21675 0.59 -0.3 25,671 + HMPREF1058_RS21675 0.59 -0.6 25,672 - HMPREF1058_RS21675 0.59 -1.7 25,705 - HMPREF1058_RS21675 0.62 +1.1 25,705 - HMPREF1058_RS21675 0.62 +0.5 25,724 - HMPREF1058_RS21675 0.63 +1.2 25,724 - HMPREF1058_RS21675 0.63 +0.9 25,801 - HMPREF1058_RS21675 0.70 +1.5 25,860 - HMPREF1058_RS21675 0.75 +0.2 25,894 + HMPREF1058_RS21675 0.78 -1.5 25,908 - HMPREF1058_RS21675 0.79 +0.3 25,958 + HMPREF1058_RS21675 0.84 +0.7 25,960 + HMPREF1058_RS21675 0.84 -0.7 25,961 - HMPREF1058_RS21675 0.84 -0.7 25,961 - HMPREF1058_RS21675 0.84 +0.7 25,962 + HMPREF1058_RS21675 0.84 +0.3 25,962 + HMPREF1058_RS21675 0.84 +1.5 25,962 + HMPREF1058_RS21675 0.84 +0.7 25,989 + HMPREF1058_RS21675 0.86 -1.4 26,006 - HMPREF1058_RS21675 0.88 +1.3 26,035 - +2.0 26,048 + -1.1 26,053 - -0.1 26,105 + +1.4 26,106 - -0.5 26,106 - +0.7 26,108 - +1.5 26,108 - -0.3 26,138 + -2.4 26,139 - +0.5 26,143 + -3.1 26,143 + -1.0 26,144 - -0.1 26,396 + HMPREF1058_RS21680 0.20 +1.3 26,432 - HMPREF1058_RS21680 0.25 +0.2 26,533 - HMPREF1058_RS21680 0.36 -1.7 26,688 - HMPREF1058_RS21680 0.53 +0.5 26,701 - HMPREF1058_RS21680 0.55 -0.5 26,702 + HMPREF1058_RS21680 0.55 -0.7 26,703 - HMPREF1058_RS21680 0.55 -2.1 26,705 + HMPREF1058_RS21680 0.55 -1.8 26,707 + HMPREF1058_RS21680 0.56 -0.5 26,739 + HMPREF1058_RS21680 0.59 -0.1 26,739 + HMPREF1058_RS21680 0.59 -0.5 26,740 - HMPREF1058_RS21680 0.59 -1.8 26,740 - HMPREF1058_RS21680 0.59 -1.7 26,768 + HMPREF1058_RS21680 0.62 -0.1 26,769 - HMPREF1058_RS21680 0.62 -0.1 26,861 + HMPREF1058_RS21680 0.73 -0.1 26,861 + HMPREF1058_RS21680 0.73 -0.1 26,923 + HMPREF1058_RS21680 0.80 +1.1 26,981 - HMPREF1058_RS21680 0.86 -0.2 27,068 + -1.1 27,069 - -1.8 27,069 - +1.8 27,072 + -1.1 27,072 + -1.7 27,073 - -0.5 27,073 - -0.3 27,114 - -1.7
Or see this region's nucleotide sequence