Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18910 and HMPREF1058_RS18905 overlap by 4 nucleotides HMPREF1058_RS18905 and HMPREF1058_RS18900 are separated by 1 nucleotides HMPREF1058_RS18900 and HMPREF1058_RS18895 are separated by 11 nucleotides HMPREF1058_RS18895 and HMPREF1058_RS20200 overlap by 11 nucleotides
HMPREF1058_RS18910: HMPREF1058_RS18910 - hypothetical protein, at 49,354 to 50,091
_RS18910
HMPREF1058_RS18905: HMPREF1058_RS18905 - hypothetical protein, at 50,088 to 50,519
_RS18905
HMPREF1058_RS18900: HMPREF1058_RS18900 - hypothetical protein, at 50,521 to 50,706
_RS18900
HMPREF1058_RS18895: HMPREF1058_RS18895 - hypothetical protein, at 50,718 to 51,155
_RS18895
HMPREF1058_RS20200: HMPREF1058_RS20200 - HNH endonuclease, at 51,145 to 51,759
_RS20200
Position (kb) 50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 49.598 kb on + strand, within HMPREF1058_RS18910 at 49.692 kb on + strand, within HMPREF1058_RS18910 at 49.838 kb on + strand, within HMPREF1058_RS18910 at 50.029 kb on + strand at 50.051 kb on + strand at 50.108 kb on + strand at 50.108 kb on + strand at 50.244 kb on + strand, within HMPREF1058_RS18905 at 50.429 kb on + strand, within HMPREF1058_RS18905 at 50.429 kb on + strand, within HMPREF1058_RS18905 at 50.594 kb on + strand, within HMPREF1058_RS18900 at 50.758 kb on + strand at 50.798 kb on + strand, within HMPREF1058_RS18895 at 51.102 kb on + strand, within HMPREF1058_RS18895 at 51.123 kb on + strand at 51.146 kb on + strand at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.278 kb on + strand, within HMPREF1058_RS20200 at 51.360 kb on + strand, within HMPREF1058_RS20200 at 51.505 kb on + strand, within HMPREF1058_RS20200 at 51.564 kb on + strand, within HMPREF1058_RS20200
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 remove 49,598 + HMPREF1058_RS18910 0.33 -2.8 49,692 + HMPREF1058_RS18910 0.46 -2.3 49,838 + HMPREF1058_RS18910 0.66 -0.6 50,029 + -1.6 50,051 + -2.0 50,108 + +1.3 50,108 + -3.5 50,244 + HMPREF1058_RS18905 0.36 -0.6 50,429 + HMPREF1058_RS18905 0.79 -0.5 50,429 + HMPREF1058_RS18905 0.79 -0.5 50,594 + HMPREF1058_RS18900 0.39 +0.9 50,758 + -2.5 50,798 + HMPREF1058_RS18895 0.18 +0.4 51,102 + HMPREF1058_RS18895 0.88 +1.6 51,123 + -0.7 51,146 + +1.3 51,278 + HMPREF1058_RS20200 0.22 -2.1 51,278 + HMPREF1058_RS20200 0.22 -0.3 51,278 + HMPREF1058_RS20200 0.22 -0.4 51,278 + HMPREF1058_RS20200 0.22 -0.0 51,360 + HMPREF1058_RS20200 0.35 +1.2 51,505 + HMPREF1058_RS20200 0.59 -1.6 51,564 + HMPREF1058_RS20200 0.68 -1.4
Or see this region's nucleotide sequence