Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12575 and HMPREF1058_RS12570 are separated by 88 nucleotides HMPREF1058_RS12570 and HMPREF1058_RS12565 are separated by 51 nucleotides HMPREF1058_RS12565 and HMPREF1058_RS12560 are separated by 200 nucleotides
HMPREF1058_RS12575: HMPREF1058_RS12575 - mannose-1-phosphate guanylyltransferase, at 75,652 to 76,695
_RS12575
HMPREF1058_RS12570: HMPREF1058_RS12570 - HIT family protein, at 76,784 to 77,191
_RS12570
HMPREF1058_RS12565: HMPREF1058_RS12565 - transcription elongation factor GreA, at 77,243 to 77,707
_RS12565
HMPREF1058_RS12560: HMPREF1058_RS12560 - redoxin domain-containing protein, at 77,908 to 79,056
_RS12560
Position (kb) 77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 76.250 kb on + strand, within HMPREF1058_RS12575 at 76.251 kb on - strand, within HMPREF1058_RS12575 at 76.263 kb on + strand, within HMPREF1058_RS12575 at 76.264 kb on - strand, within HMPREF1058_RS12575 at 76.270 kb on - strand, within HMPREF1058_RS12575 at 76.356 kb on + strand, within HMPREF1058_RS12575 at 76.433 kb on + strand, within HMPREF1058_RS12575 at 76.434 kb on - strand, within HMPREF1058_RS12575 at 76.434 kb on - strand, within HMPREF1058_RS12575 at 76.454 kb on - strand, within HMPREF1058_RS12575 at 76.454 kb on - strand, within HMPREF1058_RS12575 at 76.460 kb on + strand, within HMPREF1058_RS12575 at 76.460 kb on + strand, within HMPREF1058_RS12575 at 76.491 kb on - strand, within HMPREF1058_RS12575 at 76.511 kb on + strand, within HMPREF1058_RS12575 at 76.512 kb on - strand, within HMPREF1058_RS12575 at 76.514 kb on - strand, within HMPREF1058_RS12575 at 76.516 kb on - strand, within HMPREF1058_RS12575 at 76.522 kb on + strand, within HMPREF1058_RS12575 at 76.523 kb on - strand, within HMPREF1058_RS12575 at 76.527 kb on + strand, within HMPREF1058_RS12575 at 76.528 kb on - strand, within HMPREF1058_RS12575 at 76.532 kb on + strand, within HMPREF1058_RS12575 at 76.533 kb on - strand, within HMPREF1058_RS12575 at 76.535 kb on + strand, within HMPREF1058_RS12575 at 76.536 kb on - strand, within HMPREF1058_RS12575 at 76.539 kb on - strand, within HMPREF1058_RS12575 at 76.566 kb on - strand, within HMPREF1058_RS12575 at 76.574 kb on + strand, within HMPREF1058_RS12575 at 76.575 kb on - strand, within HMPREF1058_RS12575 at 76.586 kb on + strand, within HMPREF1058_RS12575 at 76.617 kb on - strand at 76.761 kb on - strand at 76.763 kb on - strand at 76.770 kb on - strand at 76.785 kb on + strand at 76.912 kb on + strand, within HMPREF1058_RS12570 at 76.913 kb on - strand, within HMPREF1058_RS12570 at 76.913 kb on - strand, within HMPREF1058_RS12570 at 76.931 kb on + strand, within HMPREF1058_RS12570 at 76.953 kb on - strand, within HMPREF1058_RS12570 at 77.015 kb on - strand, within HMPREF1058_RS12570 at 77.049 kb on + strand, within HMPREF1058_RS12570 at 77.050 kb on - strand, within HMPREF1058_RS12570 at 77.080 kb on + strand, within HMPREF1058_RS12570 at 77.080 kb on + strand, within HMPREF1058_RS12570 at 77.081 kb on - strand, within HMPREF1058_RS12570 at 77.164 kb on + strand at 77.164 kb on + strand at 77.181 kb on - strand at 77.191 kb on + strand at 77.192 kb on - strand at 77.196 kb on - strand at 77.197 kb on + strand at 77.197 kb on + strand at 77.198 kb on - strand at 77.204 kb on + strand at 77.208 kb on + strand at 77.237 kb on + strand at 77.237 kb on + strand at 77.239 kb on + strand at 77.239 kb on + strand at 77.240 kb on - strand at 77.244 kb on + strand at 77.244 kb on + strand at 77.255 kb on - strand at 77.571 kb on + strand, within HMPREF1058_RS12565 at 77.699 kb on - strand at 77.701 kb on - strand at 77.732 kb on - strand at 77.734 kb on - strand at 77.738 kb on - strand at 77.841 kb on - strand at 77.843 kb on + strand at 77.857 kb on - strand at 77.867 kb on + strand at 77.868 kb on - strand at 77.898 kb on - strand at 77.909 kb on + strand at 77.965 kb on + strand at 78.010 kb on + strand at 78.015 kb on + strand at 78.016 kb on - strand at 78.019 kb on + strand at 78.030 kb on - strand, within HMPREF1058_RS12560 at 78.129 kb on - strand, within HMPREF1058_RS12560 at 78.152 kb on + strand, within HMPREF1058_RS12560 at 78.152 kb on + strand, within HMPREF1058_RS12560 at 78.153 kb on - strand, within HMPREF1058_RS12560 at 78.153 kb on - strand, within HMPREF1058_RS12560 at 78.156 kb on + strand, within HMPREF1058_RS12560 at 78.156 kb on + strand, within HMPREF1058_RS12560 at 78.157 kb on - strand, within HMPREF1058_RS12560 at 78.159 kb on + strand, within HMPREF1058_RS12560 at 78.159 kb on + strand, within HMPREF1058_RS12560 at 78.160 kb on - strand, within HMPREF1058_RS12560 at 78.207 kb on + strand, within HMPREF1058_RS12560 at 78.208 kb on - strand, within HMPREF1058_RS12560 at 78.208 kb on - strand, within HMPREF1058_RS12560 at 78.211 kb on + strand, within HMPREF1058_RS12560 at 78.211 kb on + strand, within HMPREF1058_RS12560 at 78.212 kb on - strand, within HMPREF1058_RS12560 at 78.212 kb on - strand, within HMPREF1058_RS12560 at 78.212 kb on - strand, within HMPREF1058_RS12560 at 78.265 kb on - strand, within HMPREF1058_RS12560 at 78.377 kb on - strand, within HMPREF1058_RS12560 at 78.385 kb on - strand, within HMPREF1058_RS12560 at 78.385 kb on - strand, within HMPREF1058_RS12560 at 78.389 kb on + strand, within HMPREF1058_RS12560 at 78.390 kb on - strand, within HMPREF1058_RS12560 at 78.427 kb on - strand, within HMPREF1058_RS12560 at 78.471 kb on + strand, within HMPREF1058_RS12560 at 78.495 kb on + strand, within HMPREF1058_RS12560 at 78.497 kb on + strand, within HMPREF1058_RS12560 at 78.561 kb on - strand, within HMPREF1058_RS12560 at 78.592 kb on + strand, within HMPREF1058_RS12560
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 remove 76,250 + HMPREF1058_RS12575 0.57 -0.9 76,251 - HMPREF1058_RS12575 0.57 -2.2 76,263 + HMPREF1058_RS12575 0.59 -2.6 76,264 - HMPREF1058_RS12575 0.59 -0.5 76,270 - HMPREF1058_RS12575 0.59 -1.7 76,356 + HMPREF1058_RS12575 0.67 -4.0 76,433 + HMPREF1058_RS12575 0.75 -3.6 76,434 - HMPREF1058_RS12575 0.75 -1.5 76,434 - HMPREF1058_RS12575 0.75 -2.2 76,454 - HMPREF1058_RS12575 0.77 -3.9 76,454 - HMPREF1058_RS12575 0.77 -2.5 76,460 + HMPREF1058_RS12575 0.77 -0.4 76,460 + HMPREF1058_RS12575 0.77 -3.4 76,491 - HMPREF1058_RS12575 0.80 -1.5 76,511 + HMPREF1058_RS12575 0.82 -2.0 76,512 - HMPREF1058_RS12575 0.82 -3.2 76,514 - HMPREF1058_RS12575 0.83 -2.0 76,516 - HMPREF1058_RS12575 0.83 -3.7 76,522 + HMPREF1058_RS12575 0.83 -2.0 76,523 - HMPREF1058_RS12575 0.83 -1.7 76,527 + HMPREF1058_RS12575 0.84 -1.8 76,528 - HMPREF1058_RS12575 0.84 -3.4 76,532 + HMPREF1058_RS12575 0.84 -2.9 76,533 - HMPREF1058_RS12575 0.84 -4.5 76,535 + HMPREF1058_RS12575 0.85 -3.7 76,536 - HMPREF1058_RS12575 0.85 -3.1 76,539 - HMPREF1058_RS12575 0.85 -3.8 76,566 - HMPREF1058_RS12575 0.88 -2.7 76,574 + HMPREF1058_RS12575 0.88 -3.9 76,575 - HMPREF1058_RS12575 0.88 -2.8 76,586 + HMPREF1058_RS12575 0.89 -2.7 76,617 - -2.7 76,761 - +1.7 76,763 - +0.9 76,770 - +0.6 76,785 + +0.6 76,912 + HMPREF1058_RS12570 0.31 +1.2 76,913 - HMPREF1058_RS12570 0.32 -2.4 76,913 - HMPREF1058_RS12570 0.32 +0.4 76,931 + HMPREF1058_RS12570 0.36 +1.4 76,953 - HMPREF1058_RS12570 0.41 -0.9 77,015 - HMPREF1058_RS12570 0.57 -0.9 77,049 + HMPREF1058_RS12570 0.65 +0.1 77,050 - HMPREF1058_RS12570 0.65 +1.6 77,080 + HMPREF1058_RS12570 0.73 -2.4 77,080 + HMPREF1058_RS12570 0.73 +1.1 77,081 - HMPREF1058_RS12570 0.73 +1.1 77,164 + -1.1 77,164 + -0.0 77,181 - -0.0 77,191 + -0.7 77,192 - -1.4 77,196 - -0.9 77,197 + -1.2 77,197 + -2.0 77,198 - -2.0 77,204 + -0.9 77,208 + +1.4 77,237 + -1.0 77,237 + -2.7 77,239 + -2.0 77,239 + -2.0 77,240 - -0.8 77,244 + -0.1 77,244 + +1.0 77,255 - +1.2 77,571 + HMPREF1058_RS12565 0.71 -0.4 77,699 - -0.4 77,701 - -3.2 77,732 - -0.4 77,734 - +0.4 77,738 - -0.5 77,841 - -0.1 77,843 + -2.0 77,857 - -1.4 77,867 + -3.2 77,868 - -1.1 77,898 - -0.8 77,909 + -2.6 77,965 + -2.0 78,010 + -3.5 78,015 + -0.4 78,016 - -1.8 78,019 + -0.5 78,030 - HMPREF1058_RS12560 0.11 -0.5 78,129 - HMPREF1058_RS12560 0.19 -2.0 78,152 + HMPREF1058_RS12560 0.21 -0.2 78,152 + HMPREF1058_RS12560 0.21 -1.7 78,153 - HMPREF1058_RS12560 0.21 -0.1 78,153 - HMPREF1058_RS12560 0.21 -0.1 78,156 + HMPREF1058_RS12560 0.22 -2.2 78,156 + HMPREF1058_RS12560 0.22 -0.4 78,157 - HMPREF1058_RS12560 0.22 -1.2 78,159 + HMPREF1058_RS12560 0.22 -1.1 78,159 + HMPREF1058_RS12560 0.22 -0.6 78,160 - HMPREF1058_RS12560 0.22 +0.2 78,207 + HMPREF1058_RS12560 0.26 -1.1 78,208 - HMPREF1058_RS12560 0.26 -2.2 78,208 - HMPREF1058_RS12560 0.26 +0.2 78,211 + HMPREF1058_RS12560 0.26 -1.4 78,211 + HMPREF1058_RS12560 0.26 -1.4 78,212 - HMPREF1058_RS12560 0.26 -1.0 78,212 - HMPREF1058_RS12560 0.26 +1.5 78,212 - HMPREF1058_RS12560 0.26 +3.7 78,265 - HMPREF1058_RS12560 0.31 -0.5 78,377 - HMPREF1058_RS12560 0.41 -1.0 78,385 - HMPREF1058_RS12560 0.42 -2.7 78,385 - HMPREF1058_RS12560 0.42 -1.6 78,389 + HMPREF1058_RS12560 0.42 -3.2 78,390 - HMPREF1058_RS12560 0.42 -1.6 78,427 - HMPREF1058_RS12560 0.45 -1.2 78,471 + HMPREF1058_RS12560 0.49 -1.1 78,495 + HMPREF1058_RS12560 0.51 -3.6 78,497 + HMPREF1058_RS12560 0.51 -2.4 78,561 - HMPREF1058_RS12560 0.57 +0.3 78,592 + HMPREF1058_RS12560 0.60 -0.8
Or see this region's nucleotide sequence