Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10165 and HMPREF1058_RS10160 are separated by 61 nucleotides HMPREF1058_RS10160 and HMPREF1058_RS10155 are separated by 29 nucleotides HMPREF1058_RS10155 and HMPREF1058_RS10145 are separated by 367 nucleotides
HMPREF1058_RS10165: HMPREF1058_RS10165 - hypothetical protein, at 713,043 to 713,825
_RS10165
HMPREF1058_RS10160: HMPREF1058_RS10160 - hypothetical protein, at 713,887 to 714,645
_RS10160
HMPREF1058_RS10155: HMPREF1058_RS10155 - hypothetical protein, at 714,675 to 715,103
_RS10155
HMPREF1058_RS10145: HMPREF1058_RS10145 - hypothetical protein, at 715,471 to 716,052
_RS10145
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 713.681 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.708 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.710 kb on + strand, within HMPREF1058_RS10165 at 713.949 kb on + strand at 713.955 kb on + strand at 714.456 kb on + strand, within HMPREF1058_RS10160 at 714.572 kb on + strand at 714.572 kb on + strand at 714.740 kb on + strand, within HMPREF1058_RS10155 at 714.773 kb on + strand, within HMPREF1058_RS10155 at 714.804 kb on + strand, within HMPREF1058_RS10155 at 715.092 kb on + strand at 715.092 kb on + strand at 715.121 kb on + strand at 715.193 kb on + strand at 715.204 kb on + strand at 715.283 kb on + strand at 715.289 kb on + strand at 715.303 kb on + strand at 715.489 kb on + strand at 715.592 kb on + strand, within HMPREF1058_RS10145 at 715.659 kb on + strand, within HMPREF1058_RS10145 at 715.670 kb on + strand, within HMPREF1058_RS10145 at 715.670 kb on + strand, within HMPREF1058_RS10145 at 715.998 kb on + strand at 716.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 remove 713,681 + HMPREF1058_RS10165 0.81 +0.3 713,708 + HMPREF1058_RS10165 0.85 -0.9 713,708 + HMPREF1058_RS10165 0.85 -0.1 713,708 + HMPREF1058_RS10165 0.85 +0.5 713,710 + HMPREF1058_RS10165 0.85 -1.9 713,710 + HMPREF1058_RS10165 0.85 +0.1 713,710 + HMPREF1058_RS10165 0.85 +0.7 713,949 + +1.7 713,955 + -1.8 714,456 + HMPREF1058_RS10160 0.75 -2.9 714,572 + -0.2 714,572 + -0.4 714,740 + HMPREF1058_RS10155 0.15 +1.2 714,773 + HMPREF1058_RS10155 0.23 -1.3 714,804 + HMPREF1058_RS10155 0.30 +0.5 715,092 + -0.1 715,092 + -0.8 715,121 + +0.4 715,193 + +0.9 715,204 + +0.9 715,283 + +4.2 715,289 + -0.1 715,303 + -0.0 715,489 + -0.3 715,592 + HMPREF1058_RS10145 0.21 -0.4 715,659 + HMPREF1058_RS10145 0.32 +1.4 715,670 + HMPREF1058_RS10145 0.34 +1.6 715,670 + HMPREF1058_RS10145 0.34 -1.3 715,998 + -0.7 716,057 + -0.0
Or see this region's nucleotide sequence