Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06625 and HMPREF1058_RS06620 are separated by 113 nucleotides HMPREF1058_RS06620 and HMPREF1058_RS06615 are separated by 175 nucleotides
HMPREF1058_RS06625: HMPREF1058_RS06625 - undecaprenyl-phosphate glucose phosphotransferase, at 434,028 to 435,431
_RS06625
HMPREF1058_RS06620: HMPREF1058_RS06620 - mannose-1-phosphate guanylyltransferase, at 435,545 to 436,609
_RS06620
HMPREF1058_RS06615: HMPREF1058_RS06615 - GDP-mannose 4,6-dehydratase, at 436,785 to 437,867
_RS06615
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.550 kb on - strand, within HMPREF1058_RS06625 at 434.569 kb on - strand, within HMPREF1058_RS06625 at 434.706 kb on - strand, within HMPREF1058_RS06625 at 434.710 kb on - strand, within HMPREF1058_RS06625 at 434.820 kb on - strand, within HMPREF1058_RS06625 at 434.882 kb on - strand, within HMPREF1058_RS06625 at 434.930 kb on - strand, within HMPREF1058_RS06625 at 434.967 kb on - strand, within HMPREF1058_RS06625 at 435.073 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.257 kb on - strand, within HMPREF1058_RS06625 at 435.281 kb on - strand, within HMPREF1058_RS06625 at 435.396 kb on - strand at 435.400 kb on - strand at 435.463 kb on - strand at 435.470 kb on - strand at 436.607 kb on + strand at 436.611 kb on + strand at 436.642 kb on + strand at 436.643 kb on - strand at 436.643 kb on - strand at 436.653 kb on + strand at 436.654 kb on - strand at 436.654 kb on - strand at 436.717 kb on - strand at 436.717 kb on - strand at 436.723 kb on - strand at 436.726 kb on + strand at 436.730 kb on + strand at 436.730 kb on + strand at 436.731 kb on - strand at 436.731 kb on - strand at 436.731 kb on - strand at 436.773 kb on - strand at 436.812 kb on - strand at 436.812 kb on - strand at 436.927 kb on - strand, within HMPREF1058_RS06615 at 437.016 kb on - strand, within HMPREF1058_RS06615 at 437.048 kb on + strand, within HMPREF1058_RS06615 at 437.133 kb on - strand, within HMPREF1058_RS06615 at 437.151 kb on - strand at 437.324 kb on + strand, within HMPREF1058_RS06615 at 437.493 kb on + strand, within HMPREF1058_RS06615 at 437.504 kb on + strand, within HMPREF1058_RS06615 at 437.505 kb on - strand, within HMPREF1058_RS06615 at 437.562 kb on + strand, within HMPREF1058_RS06615 at 437.563 kb on - strand, within HMPREF1058_RS06615 at 437.586 kb on - strand, within HMPREF1058_RS06615
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 remove 434,550 - HMPREF1058_RS06625 0.37 -1.0 434,569 - HMPREF1058_RS06625 0.39 -1.2 434,706 - HMPREF1058_RS06625 0.48 -3.2 434,710 - HMPREF1058_RS06625 0.49 +0.8 434,820 - HMPREF1058_RS06625 0.56 -2.3 434,882 - HMPREF1058_RS06625 0.61 -1.0 434,930 - HMPREF1058_RS06625 0.64 -2.6 434,967 - HMPREF1058_RS06625 0.67 -1.0 435,073 - HMPREF1058_RS06625 0.74 -1.2 435,157 - HMPREF1058_RS06625 0.80 -2.0 435,157 - HMPREF1058_RS06625 0.80 -2.3 435,157 - HMPREF1058_RS06625 0.80 -3.7 435,257 - HMPREF1058_RS06625 0.88 -2.0 435,281 - HMPREF1058_RS06625 0.89 -1.6 435,396 - -2.8 435,400 - -3.2 435,463 - +0.6 435,470 - -1.8 436,607 + +0.4 436,611 + +1.0 436,642 + +0.7 436,643 - -0.8 436,643 - -2.3 436,653 + +0.1 436,654 - +1.1 436,654 - -1.8 436,717 - -0.9 436,717 - +2.6 436,723 - -0.7 436,726 + +0.6 436,730 + -1.0 436,730 + -2.2 436,731 - +0.3 436,731 - -1.0 436,731 - +0.4 436,773 - +2.3 436,812 - -2.8 436,812 - -1.4 436,927 - HMPREF1058_RS06615 0.13 -2.3 437,016 - HMPREF1058_RS06615 0.21 -1.6 437,048 + HMPREF1058_RS06615 0.24 +1.8 437,133 - HMPREF1058_RS06615 0.32 -0.4 437,151 - +1.0 437,324 + HMPREF1058_RS06615 0.50 -1.2 437,493 + HMPREF1058_RS06615 0.65 -0.6 437,504 + HMPREF1058_RS06615 0.66 +0.4 437,505 - HMPREF1058_RS06615 0.66 -0.2 437,562 + HMPREF1058_RS06615 0.72 -0.3 437,563 - HMPREF1058_RS06615 0.72 -3.0 437,586 - HMPREF1058_RS06615 0.74 -1.0
Or see this region's nucleotide sequence