Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10925 and HMPREF1058_RS10920 are separated by 0 nucleotides HMPREF1058_RS10920 and HMPREF1058_RS10915 are separated by 15 nucleotides HMPREF1058_RS10915 and HMPREF1058_RS10910 are separated by 76 nucleotides
HMPREF1058_RS10925: HMPREF1058_RS10925 - arginine--tRNA ligase, at 527,407 to 529,227
_RS10925
HMPREF1058_RS10920: HMPREF1058_RS10920 - viroplasmin family protein, at 529,228 to 529,854
_RS10920
HMPREF1058_RS10915: HMPREF1058_RS10915 - alkaline phosphatase family protein, at 529,870 to 531,696
_RS10915
HMPREF1058_RS10910: HMPREF1058_RS10910 - glycosyltransferase family 39 protein, at 531,773 to 533,497
_RS10910
Position (kb) 529
530
531
532 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 529.225 kb on + strand at 529.396 kb on + strand, within HMPREF1058_RS10920 at 529.398 kb on + strand, within HMPREF1058_RS10920 at 529.400 kb on + strand, within HMPREF1058_RS10920 at 529.458 kb on + strand, within HMPREF1058_RS10920 at 529.568 kb on - strand, within HMPREF1058_RS10920 at 529.784 kb on - strand, within HMPREF1058_RS10920 at 529.870 kb on - strand at 529.888 kb on + strand at 529.891 kb on - strand at 529.901 kb on - strand at 529.908 kb on + strand at 529.993 kb on + strand at 529.994 kb on - strand at 529.996 kb on - strand at 530.003 kb on + strand at 530.072 kb on + strand, within HMPREF1058_RS10915 at 530.079 kb on - strand, within HMPREF1058_RS10915 at 530.148 kb on + strand, within HMPREF1058_RS10915 at 530.149 kb on - strand, within HMPREF1058_RS10915 at 530.183 kb on - strand, within HMPREF1058_RS10915 at 530.225 kb on - strand, within HMPREF1058_RS10915 at 530.317 kb on - strand, within HMPREF1058_RS10915 at 530.397 kb on - strand, within HMPREF1058_RS10915 at 530.421 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.436 kb on - strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.456 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.635 kb on - strand, within HMPREF1058_RS10915 at 530.797 kb on - strand, within HMPREF1058_RS10915 at 530.904 kb on - strand, within HMPREF1058_RS10915 at 531.088 kb on + strand, within HMPREF1058_RS10915 at 531.095 kb on - strand, within HMPREF1058_RS10915 at 531.220 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.316 kb on + strand, within HMPREF1058_RS10915 at 531.317 kb on - strand, within HMPREF1058_RS10915 at 531.360 kb on + strand, within HMPREF1058_RS10915 at 531.480 kb on + strand, within HMPREF1058_RS10915 at 531.481 kb on - strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.514 kb on - strand at 531.532 kb on + strand at 531.532 kb on + strand at 531.534 kb on + strand at 531.731 kb on + strand at 531.732 kb on - strand at 531.734 kb on - strand at 531.770 kb on + strand at 531.770 kb on + strand at 531.770 kb on + strand at 531.771 kb on - strand at 531.799 kb on - strand at 531.835 kb on - strand at 531.864 kb on + strand at 531.865 kb on - strand at 531.914 kb on + strand at 531.921 kb on + strand at 531.921 kb on + strand at 531.970 kb on + strand, within HMPREF1058_RS10910 at 531.970 kb on + strand, within HMPREF1058_RS10910 at 531.987 kb on + strand, within HMPREF1058_RS10910 at 532.009 kb on + strand, within HMPREF1058_RS10910 at 532.010 kb on - strand, within HMPREF1058_RS10910 at 532.011 kb on + strand, within HMPREF1058_RS10910 at 532.012 kb on - strand, within HMPREF1058_RS10910 at 532.017 kb on + strand, within HMPREF1058_RS10910 at 532.077 kb on - strand, within HMPREF1058_RS10910 at 532.082 kb on + strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.195 kb on + strand, within HMPREF1058_RS10910 at 532.196 kb on - strand, within HMPREF1058_RS10910 at 532.223 kb on + strand, within HMPREF1058_RS10910 at 532.313 kb on + strand, within HMPREF1058_RS10910 at 532.341 kb on - strand, within HMPREF1058_RS10910 at 532.387 kb on + strand, within HMPREF1058_RS10910 at 532.390 kb on - strand, within HMPREF1058_RS10910 at 532.456 kb on + strand, within HMPREF1058_RS10910 at 532.462 kb on + strand, within HMPREF1058_RS10910 at 532.462 kb on + strand, within HMPREF1058_RS10910 at 532.463 kb on - strand, within HMPREF1058_RS10910 at 532.470 kb on + strand, within HMPREF1058_RS10910 at 532.474 kb on + strand, within HMPREF1058_RS10910 at 532.474 kb on + strand, within HMPREF1058_RS10910 at 532.515 kb on + strand, within HMPREF1058_RS10910 at 532.515 kb on + strand, within HMPREF1058_RS10910 at 532.516 kb on - strand, within HMPREF1058_RS10910 at 532.559 kb on + strand, within HMPREF1058_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 remove 529,225 + -1.6 529,396 + HMPREF1058_RS10920 0.27 -1.3 529,398 + HMPREF1058_RS10920 0.27 -0.3 529,400 + HMPREF1058_RS10920 0.27 -0.3 529,458 + HMPREF1058_RS10920 0.37 -1.9 529,568 - HMPREF1058_RS10920 0.54 -2.3 529,784 - HMPREF1058_RS10920 0.89 -1.3 529,870 - -0.9 529,888 + -0.1 529,891 - -0.3 529,901 - +2.0 529,908 + +0.6 529,993 + -1.1 529,994 - +1.7 529,996 - -1.8 530,003 + -2.3 530,072 + HMPREF1058_RS10915 0.11 -0.6 530,079 - HMPREF1058_RS10915 0.11 -1.8 530,148 + HMPREF1058_RS10915 0.15 -3.4 530,149 - HMPREF1058_RS10915 0.15 -0.6 530,183 - HMPREF1058_RS10915 0.17 +0.4 530,225 - HMPREF1058_RS10915 0.19 -3.6 530,317 - HMPREF1058_RS10915 0.24 +1.2 530,397 - HMPREF1058_RS10915 0.29 -3.1 530,421 + HMPREF1058_RS10915 0.30 -0.3 530,423 + HMPREF1058_RS10915 0.30 -0.7 530,423 + HMPREF1058_RS10915 0.30 -1.3 530,424 - HMPREF1058_RS10915 0.30 +1.3 530,424 - HMPREF1058_RS10915 0.30 -1.3 530,436 - HMPREF1058_RS10915 0.31 -1.3 530,451 + HMPREF1058_RS10915 0.32 -0.3 530,451 + HMPREF1058_RS10915 0.32 -0.3 530,451 + HMPREF1058_RS10915 0.32 +1.1 530,456 + HMPREF1058_RS10915 0.32 +0.2 530,634 + HMPREF1058_RS10915 0.42 -0.7 530,634 + HMPREF1058_RS10915 0.42 -3.1 530,635 - HMPREF1058_RS10915 0.42 -1.5 530,797 - HMPREF1058_RS10915 0.51 -1.6 530,904 - HMPREF1058_RS10915 0.57 -1.6 531,088 + HMPREF1058_RS10915 0.67 -1.2 531,095 - HMPREF1058_RS10915 0.67 -0.8 531,220 + HMPREF1058_RS10915 0.74 -1.2 531,222 + HMPREF1058_RS10915 0.74 -2.3 531,222 + HMPREF1058_RS10915 0.74 -0.7 531,222 + HMPREF1058_RS10915 0.74 -0.7 531,223 - HMPREF1058_RS10915 0.74 -2.6 531,223 - HMPREF1058_RS10915 0.74 +0.3 531,223 - HMPREF1058_RS10915 0.74 +0.5 531,316 + HMPREF1058_RS10915 0.79 -2.4 531,317 - HMPREF1058_RS10915 0.79 -4.6 531,360 + HMPREF1058_RS10915 0.82 +0.7 531,480 + HMPREF1058_RS10915 0.88 -0.8 531,481 - HMPREF1058_RS10915 0.88 -3.3 531,513 + HMPREF1058_RS10915 0.90 +1.9 531,513 + HMPREF1058_RS10915 0.90 +1.2 531,513 + HMPREF1058_RS10915 0.90 -2.6 531,514 - +0.4 531,532 + -1.1 531,532 + -4.3 531,534 + -0.0 531,731 + -2.6 531,732 - +1.4 531,734 - -2.6 531,770 + -3.1 531,770 + -2.2 531,770 + +1.6 531,771 - +0.2 531,799 - -1.3 531,835 - -2.6 531,864 + -2.3 531,865 - -3.5 531,914 + -1.8 531,921 + -3.3 531,921 + -3.0 531,970 + HMPREF1058_RS10910 0.11 -0.3 531,970 + HMPREF1058_RS10910 0.11 -3.7 531,987 + HMPREF1058_RS10910 0.12 -1.1 532,009 + HMPREF1058_RS10910 0.14 -3.1 532,010 - HMPREF1058_RS10910 0.14 -3.1 532,011 + HMPREF1058_RS10910 0.14 -3.1 532,012 - HMPREF1058_RS10910 0.14 -3.5 532,017 + HMPREF1058_RS10910 0.14 -1.2 532,077 - HMPREF1058_RS10910 0.18 -0.8 532,082 + HMPREF1058_RS10910 0.18 -1.3 532,101 - HMPREF1058_RS10910 0.19 -1.1 532,101 - HMPREF1058_RS10910 0.19 -1.3 532,101 - HMPREF1058_RS10910 0.19 +0.2 532,195 + HMPREF1058_RS10910 0.24 -2.6 532,196 - HMPREF1058_RS10910 0.25 -1.8 532,223 + HMPREF1058_RS10910 0.26 -1.3 532,313 + HMPREF1058_RS10910 0.31 -2.0 532,341 - HMPREF1058_RS10910 0.33 -2.6 532,387 + HMPREF1058_RS10910 0.36 -3.2 532,390 - HMPREF1058_RS10910 0.36 -3.5 532,456 + HMPREF1058_RS10910 0.40 -2.5 532,462 + HMPREF1058_RS10910 0.40 -2.4 532,462 + HMPREF1058_RS10910 0.40 -3.0 532,463 - HMPREF1058_RS10910 0.40 -2.4 532,470 + HMPREF1058_RS10910 0.40 -3.0 532,474 + HMPREF1058_RS10910 0.41 -1.9 532,474 + HMPREF1058_RS10910 0.41 +0.2 532,515 + HMPREF1058_RS10910 0.43 -3.2 532,515 + HMPREF1058_RS10910 0.43 -3.8 532,516 - HMPREF1058_RS10910 0.43 -1.5 532,559 + HMPREF1058_RS10910 0.46 -0.5
Or see this region's nucleotide sequence