Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10210

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS10215 and HMPREF1058_RS10210 are separated by 1 nucleotidesHMPREF1058_RS10210 and HMPREF1058_RS10205 are separated by 26 nucleotidesHMPREF1058_RS10205 and HMPREF1058_RS10200 overlap by 4 nucleotidesHMPREF1058_RS10200 and HMPREF1058_RS10195 are separated by 4 nucleotides HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979 _RS10215 HMPREF1058_RS10210: HMPREF1058_RS10210 - hypothetical protein, at 707,981 to 708,391 _RS10210 HMPREF1058_RS10205: HMPREF1058_RS10205 - hypothetical protein, at 708,418 to 708,858 _RS10205 HMPREF1058_RS10200: HMPREF1058_RS10200 - hypothetical protein, at 708,855 to 709,247 _RS10200 HMPREF1058_RS10195: HMPREF1058_RS10195 - 3'-5' exonuclease, at 709,252 to 709,824 _RS10195 Position (kb) 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 707.057 kb on + strand, within HMPREF1058_RS10215at 707.108 kb on + strand, within HMPREF1058_RS10215at 707.144 kb on + strand, within HMPREF1058_RS10215at 707.144 kb on + strand, within HMPREF1058_RS10215at 707.144 kb on + strand, within HMPREF1058_RS10215at 707.144 kb on + strand, within HMPREF1058_RS10215at 707.229 kb on + strand, within HMPREF1058_RS10215at 707.330 kb on + strand, within HMPREF1058_RS10215at 707.459 kb on + strand, within HMPREF1058_RS10215at 707.459 kb on + strand, within HMPREF1058_RS10215at 707.604 kb on + strand, within HMPREF1058_RS10215at 707.704 kb on + strand, within HMPREF1058_RS10215at 707.705 kb on - strand, within HMPREF1058_RS10215at 707.705 kb on - strand, within HMPREF1058_RS10215at 707.807 kb on - strand, within HMPREF1058_RS10215at 707.811 kb on - strand, within HMPREF1058_RS10215at 707.811 kb on - strand, within HMPREF1058_RS10215at 707.894 kb on - strandat 708.124 kb on + strand, within HMPREF1058_RS10210at 708.125 kb on - strand, within HMPREF1058_RS10210at 708.126 kb on + strand, within HMPREF1058_RS10210at 708.149 kb on - strand, within HMPREF1058_RS10210at 708.153 kb on + strand, within HMPREF1058_RS10210at 708.154 kb on - strand, within HMPREF1058_RS10210at 708.159 kb on + strand, within HMPREF1058_RS10210at 708.159 kb on + strand, within HMPREF1058_RS10210at 708.160 kb on - strand, within HMPREF1058_RS10210at 708.163 kb on + strand, within HMPREF1058_RS10210at 708.177 kb on - strand, within HMPREF1058_RS10210at 708.177 kb on - strand, within HMPREF1058_RS10210at 708.219 kb on + strand, within HMPREF1058_RS10210at 708.222 kb on - strandat 708.255 kb on + strand, within HMPREF1058_RS10210at 708.314 kb on + strand, within HMPREF1058_RS10210at 708.314 kb on + strand, within HMPREF1058_RS10210at 708.314 kb on + strand, within HMPREF1058_RS10210at 708.319 kb on + strand, within HMPREF1058_RS10210at 708.319 kb on + strand, within HMPREF1058_RS10210at 708.325 kb on + strand, within HMPREF1058_RS10210at 708.326 kb on - strand, within HMPREF1058_RS10210at 708.373 kb on + strandat 708.434 kb on - strandat 708.434 kb on - strandat 708.450 kb on + strandat 708.585 kb on + strand, within HMPREF1058_RS10205at 708.586 kb on - strand, within HMPREF1058_RS10205at 708.608 kb on - strand, within HMPREF1058_RS10205at 708.766 kb on - strand, within HMPREF1058_RS10205at 708.826 kb on - strandat 708.829 kb on + strandat 708.829 kb on + strandat 708.829 kb on + strandat 708.829 kb on + strandat 708.829 kb on + strandat 708.829 kb on + strandat 708.830 kb on - strandat 708.830 kb on - strandat 708.830 kb on - strandat 708.830 kb on - strandat 708.847 kb on + strandat 708.851 kb on + strandat 708.851 kb on + strandat 708.851 kb on + strandat 708.852 kb on - strandat 708.925 kb on - strand, within HMPREF1058_RS10200at 708.994 kb on + strand, within HMPREF1058_RS10200at 708.999 kb on - strand, within HMPREF1058_RS10200at 709.032 kb on - strand, within HMPREF1058_RS10200at 709.112 kb on + strand, within HMPREF1058_RS10200at 709.113 kb on - strand, within HMPREF1058_RS10200at 709.196 kb on + strand, within HMPREF1058_RS10200at 709.254 kb on - strandat 709.276 kb on - strandat 709.284 kb on + strandat 709.307 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
remove
707,057 + HMPREF1058_RS10215 0.18 +1.6
707,108 + HMPREF1058_RS10215 0.22 +0.3
707,144 + HMPREF1058_RS10215 0.25 -0.0
707,144 + HMPREF1058_RS10215 0.25 -0.0
707,144 + HMPREF1058_RS10215 0.25 +1.1
707,144 + HMPREF1058_RS10215 0.25 +0.3
707,229 + HMPREF1058_RS10215 0.33 -1.6
707,330 + HMPREF1058_RS10215 0.42 -4.1
707,459 + HMPREF1058_RS10215 0.53 -0.9
707,459 + HMPREF1058_RS10215 0.53 -1.5
707,604 + HMPREF1058_RS10215 0.66 -3.5
707,704 + HMPREF1058_RS10215 0.75 -0.8
707,705 - HMPREF1058_RS10215 0.75 -1.9
707,705 - HMPREF1058_RS10215 0.75 -2.4
707,807 - HMPREF1058_RS10215 0.85 -2.7
707,811 - HMPREF1058_RS10215 0.85 -3.4
707,811 - HMPREF1058_RS10215 0.85 -2.7
707,894 - -0.4
708,124 + HMPREF1058_RS10210 0.35 +1.7
708,125 - HMPREF1058_RS10210 0.35 -1.4
708,126 + HMPREF1058_RS10210 0.35 +1.1
708,149 - HMPREF1058_RS10210 0.41 -2.7
708,153 + HMPREF1058_RS10210 0.42 -1.2
708,154 - HMPREF1058_RS10210 0.42 -0.4
708,159 + HMPREF1058_RS10210 0.43 +0.9
708,159 + HMPREF1058_RS10210 0.43 -1.2
708,160 - HMPREF1058_RS10210 0.44 -3.2
708,163 + HMPREF1058_RS10210 0.44 +0.1
708,177 - HMPREF1058_RS10210 0.48 -1.1
708,177 - HMPREF1058_RS10210 0.48 +0.0
708,219 + HMPREF1058_RS10210 0.58 +0.2
708,222 - -1.4
708,255 + HMPREF1058_RS10210 0.67 +0.2
708,314 + HMPREF1058_RS10210 0.81 -0.2
708,314 + HMPREF1058_RS10210 0.81 -1.7
708,314 + HMPREF1058_RS10210 0.81 -1.1
708,319 + HMPREF1058_RS10210 0.82 +0.9
708,319 + HMPREF1058_RS10210 0.82 +0.9
708,325 + HMPREF1058_RS10210 0.84 +0.9
708,326 - HMPREF1058_RS10210 0.84 -3.9
708,373 + +0.3
708,434 - -1.4
708,434 - +0.5
708,450 + -1.9
708,585 + HMPREF1058_RS10205 0.38 +0.6
708,586 - HMPREF1058_RS10205 0.38 -1.9
708,608 - HMPREF1058_RS10205 0.43 +0.8
708,766 - HMPREF1058_RS10205 0.79 -0.7
708,826 - -0.8
708,829 + +0.8
708,829 + +0.4
708,829 + -3.9
708,829 + +0.7
708,829 + -1.4
708,829 + +0.5
708,830 - -0.0
708,830 - +2.6
708,830 - +0.4
708,830 - +0.3
708,847 + +2.7
708,851 + -1.4
708,851 + +2.0
708,851 + -0.4
708,852 - -0.8
708,925 - HMPREF1058_RS10200 0.18 -1.1
708,994 + HMPREF1058_RS10200 0.35 +0.8
708,999 - HMPREF1058_RS10200 0.37 -0.4
709,032 - HMPREF1058_RS10200 0.45 +0.9
709,112 + HMPREF1058_RS10200 0.65 -2.0
709,113 - HMPREF1058_RS10200 0.66 -1.4
709,196 + HMPREF1058_RS10200 0.87 +0.6
709,254 - -2.4
709,276 - -0.2
709,284 + +0.1
709,307 + -0.3

Or see this region's nucleotide sequence