Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04710 and HMPREF1058_RS04705 are separated by 24 nucleotides HMPREF1058_RS04705 and HMPREF1058_RS04700 overlap by 1 nucleotides HMPREF1058_RS04700 and HMPREF1058_RS04695 are separated by 97 nucleotides HMPREF1058_RS04695 and HMPREF1058_RS04690 are separated by 24 nucleotides
HMPREF1058_RS04710: HMPREF1058_RS04710 - 50S ribosomal protein L25/general stress protein Ctc, at 329,514 to 330,110
_RS04710
HMPREF1058_RS04705: HMPREF1058_RS04705 - aminoacyl-tRNA hydrolase, at 330,135 to 330,698
_RS04705
HMPREF1058_RS04700: HMPREF1058_RS04700 - RNA-binding S4 domain-containing protein, at 330,698 to 331,126
_RS04700
HMPREF1058_RS04695: HMPREF1058_RS04695 - HIT family protein, at 331,224 to 331,649
_RS04695
HMPREF1058_RS04690: HMPREF1058_RS04690 - cation:proton antiporter, at 331,674 to 333,941
_RS04690
Position (kb) 330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 330.108 kb on + strand at 330.668 kb on + strand at 330.719 kb on - strand at 330.740 kb on - strand at 330.740 kb on - strand at 330.754 kb on + strand, within HMPREF1058_RS04700 at 330.758 kb on - strand, within HMPREF1058_RS04700 at 330.872 kb on + strand, within HMPREF1058_RS04700 at 330.897 kb on + strand, within HMPREF1058_RS04700 at 330.907 kb on + strand, within HMPREF1058_RS04700 at 330.907 kb on + strand, within HMPREF1058_RS04700 at 330.908 kb on - strand, within HMPREF1058_RS04700 at 330.908 kb on - strand, within HMPREF1058_RS04700 at 330.909 kb on + strand, within HMPREF1058_RS04700 at 330.909 kb on + strand, within HMPREF1058_RS04700 at 330.910 kb on - strand, within HMPREF1058_RS04700 at 330.910 kb on - strand, within HMPREF1058_RS04700 at 331.124 kb on + strand at 331.125 kb on - strand at 331.158 kb on - strand at 331.158 kb on - strand at 331.168 kb on + strand at 331.169 kb on - strand at 331.197 kb on - strand at 331.200 kb on - strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.203 kb on + strand at 331.204 kb on - strand at 331.226 kb on - strand at 331.241 kb on + strand at 331.306 kb on - strand, within HMPREF1058_RS04695 at 331.334 kb on - strand, within HMPREF1058_RS04695 at 331.376 kb on + strand, within HMPREF1058_RS04695 at 331.377 kb on - strand, within HMPREF1058_RS04695 at 331.378 kb on + strand, within HMPREF1058_RS04695 at 331.378 kb on + strand, within HMPREF1058_RS04695 at 331.379 kb on - strand, within HMPREF1058_RS04695 at 331.460 kb on + strand, within HMPREF1058_RS04695 at 331.461 kb on - strand, within HMPREF1058_RS04695 at 331.494 kb on + strand, within HMPREF1058_RS04695 at 331.554 kb on + strand, within HMPREF1058_RS04695 at 331.591 kb on - strand, within HMPREF1058_RS04695 at 331.621 kb on + strand at 331.622 kb on - strand at 331.663 kb on - strand at 331.772 kb on + strand at 331.794 kb on - strand at 331.881 kb on - strand at 331.888 kb on - strand at 332.007 kb on + strand, within HMPREF1058_RS04690 at 332.031 kb on + strand, within HMPREF1058_RS04690 at 332.032 kb on - strand, within HMPREF1058_RS04690 at 332.032 kb on - strand, within HMPREF1058_RS04690 at 332.049 kb on - strand, within HMPREF1058_RS04690 at 332.054 kb on + strand, within HMPREF1058_RS04690 at 332.054 kb on + strand, within HMPREF1058_RS04690 at 332.055 kb on - strand, within HMPREF1058_RS04690 at 332.075 kb on + strand, within HMPREF1058_RS04690 at 332.075 kb on + strand, within HMPREF1058_RS04690 at 332.076 kb on - strand, within HMPREF1058_RS04690 at 332.088 kb on + strand, within HMPREF1058_RS04690 at 332.089 kb on - strand, within HMPREF1058_RS04690 at 332.096 kb on - strand, within HMPREF1058_RS04690 at 332.099 kb on + strand, within HMPREF1058_RS04690 at 332.100 kb on - strand, within HMPREF1058_RS04690 at 332.126 kb on + strand, within HMPREF1058_RS04690 at 332.126 kb on + strand, within HMPREF1058_RS04690
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 remove 330,108 + -1.7 330,668 + +0.0 330,719 - -1.9 330,740 - +1.2 330,740 - +0.7 330,754 + HMPREF1058_RS04700 0.13 +0.1 330,758 - HMPREF1058_RS04700 0.14 -1.5 330,872 + HMPREF1058_RS04700 0.41 -0.9 330,897 + HMPREF1058_RS04700 0.46 +1.8 330,907 + HMPREF1058_RS04700 0.49 +0.6 330,907 + HMPREF1058_RS04700 0.49 -0.2 330,908 - HMPREF1058_RS04700 0.49 -1.7 330,908 - HMPREF1058_RS04700 0.49 -2.7 330,909 + HMPREF1058_RS04700 0.49 +0.8 330,909 + HMPREF1058_RS04700 0.49 -2.4 330,910 - HMPREF1058_RS04700 0.49 +1.5 330,910 - HMPREF1058_RS04700 0.49 -2.7 331,124 + +0.2 331,125 - -0.7 331,158 - -1.6 331,158 - +0.9 331,168 + +2.7 331,169 - -0.1 331,197 - -2.4 331,200 - -0.4 331,203 + -1.7 331,203 + +4.2 331,203 + -0.5 331,203 + -1.0 331,204 - +0.2 331,226 - +0.7 331,241 + +0.1 331,306 - HMPREF1058_RS04695 0.19 +0.7 331,334 - HMPREF1058_RS04695 0.26 -1.6 331,376 + HMPREF1058_RS04695 0.36 -0.3 331,377 - HMPREF1058_RS04695 0.36 +0.4 331,378 + HMPREF1058_RS04695 0.36 +0.8 331,378 + HMPREF1058_RS04695 0.36 +0.5 331,379 - HMPREF1058_RS04695 0.36 -1.2 331,460 + HMPREF1058_RS04695 0.55 +2.3 331,461 - HMPREF1058_RS04695 0.56 +2.0 331,494 + HMPREF1058_RS04695 0.63 +0.9 331,554 + HMPREF1058_RS04695 0.77 +0.3 331,591 - HMPREF1058_RS04695 0.86 +0.6 331,621 + -1.1 331,622 - -1.9 331,663 - +0.9 331,772 + -1.4 331,794 - -1.9 331,881 - +1.3 331,888 - +0.1 332,007 + HMPREF1058_RS04690 0.15 -1.0 332,031 + HMPREF1058_RS04690 0.16 +2.3 332,032 - HMPREF1058_RS04690 0.16 +1.1 332,032 - HMPREF1058_RS04690 0.16 +1.7 332,049 - HMPREF1058_RS04690 0.17 +2.1 332,054 + HMPREF1058_RS04690 0.17 -2.4 332,054 + HMPREF1058_RS04690 0.17 -0.3 332,055 - HMPREF1058_RS04690 0.17 +0.3 332,075 + HMPREF1058_RS04690 0.18 +1.7 332,075 + HMPREF1058_RS04690 0.18 +2.0 332,076 - HMPREF1058_RS04690 0.18 -3.1 332,088 + HMPREF1058_RS04690 0.18 -0.4 332,089 - HMPREF1058_RS04690 0.18 +0.7 332,096 - HMPREF1058_RS04690 0.19 -1.1 332,099 + HMPREF1058_RS04690 0.19 -1.7 332,100 - HMPREF1058_RS04690 0.19 -1.7 332,126 + HMPREF1058_RS04690 0.20 -1.4 332,126 + HMPREF1058_RS04690 0.20 +0.9
Or see this region's nucleotide sequence