Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04095 and HMPREF1058_RS04090 are separated by 73 nucleotides HMPREF1058_RS04090 and HMPREF1058_RS04085 are separated by 25 nucleotides
HMPREF1058_RS04095: HMPREF1058_RS04095 - 30S ribosomal protein S12 methylthiotransferase RimO, at 116,612 to 117,910
_RS04095
HMPREF1058_RS04090: HMPREF1058_RS04090 - HU family DNA-binding protein, at 117,984 to 118,256
_RS04090
HMPREF1058_RS04085: HMPREF1058_RS04085 - HU family DNA-binding protein, at 118,282 to 119,712
_RS04085
Position (kb) 117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 117.027 kb on - strand, within HMPREF1058_RS04095 at 117.079 kb on + strand, within HMPREF1058_RS04095 at 117.085 kb on + strand, within HMPREF1058_RS04095 at 117.191 kb on + strand, within HMPREF1058_RS04095 at 117.192 kb on - strand, within HMPREF1058_RS04095 at 117.192 kb on - strand, within HMPREF1058_RS04095 at 117.345 kb on + strand, within HMPREF1058_RS04095 at 117.346 kb on - strand, within HMPREF1058_RS04095 at 117.353 kb on + strand, within HMPREF1058_RS04095 at 117.389 kb on - strand, within HMPREF1058_RS04095 at 117.414 kb on + strand, within HMPREF1058_RS04095 at 117.414 kb on + strand, within HMPREF1058_RS04095 at 117.477 kb on + strand, within HMPREF1058_RS04095 at 117.477 kb on + strand, within HMPREF1058_RS04095 at 117.482 kb on - strand, within HMPREF1058_RS04095 at 117.613 kb on + strand, within HMPREF1058_RS04095 at 117.761 kb on + strand, within HMPREF1058_RS04095 at 117.761 kb on + strand, within HMPREF1058_RS04095 at 117.762 kb on - strand, within HMPREF1058_RS04095 at 117.765 kb on - strand, within HMPREF1058_RS04095 at 117.833 kb on + strand at 117.892 kb on - strand at 117.958 kb on + strand at 118.031 kb on + strand, within HMPREF1058_RS04090 at 118.031 kb on + strand, within HMPREF1058_RS04090 at 118.032 kb on - strand, within HMPREF1058_RS04090 at 118.032 kb on - strand, within HMPREF1058_RS04090 at 118.044 kb on - strand, within HMPREF1058_RS04090 at 118.254 kb on + strand at 118.254 kb on + strand at 118.255 kb on - strand at 118.266 kb on + strand at 118.266 kb on + strand at 118.266 kb on + strand at 118.278 kb on + strand at 118.296 kb on - strand at 118.301 kb on + strand at 118.302 kb on - strand at 118.302 kb on - strand at 118.308 kb on + strand at 118.400 kb on + strand at 118.418 kb on + strand at 118.418 kb on + strand at 118.438 kb on - strand, within HMPREF1058_RS04085 at 118.564 kb on - strand, within HMPREF1058_RS04085 at 118.592 kb on + strand, within HMPREF1058_RS04085 at 118.595 kb on + strand, within HMPREF1058_RS04085 at 118.635 kb on - strand, within HMPREF1058_RS04085 at 118.728 kb on + strand, within HMPREF1058_RS04085 at 118.849 kb on - strand, within HMPREF1058_RS04085 at 118.851 kb on - strand, within HMPREF1058_RS04085 at 119.100 kb on - strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.205 kb on + strand, within HMPREF1058_RS04085 at 119.246 kb on + strand, within HMPREF1058_RS04085 at 119.249 kb on - strand, within HMPREF1058_RS04085 at 119.249 kb on - strand, within HMPREF1058_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 remove 117,027 - HMPREF1058_RS04095 0.32 -3.2 117,079 + HMPREF1058_RS04095 0.36 -1.1 117,085 + HMPREF1058_RS04095 0.36 -0.8 117,191 + HMPREF1058_RS04095 0.45 -2.1 117,192 - HMPREF1058_RS04095 0.45 -2.1 117,192 - HMPREF1058_RS04095 0.45 -2.4 117,345 + HMPREF1058_RS04095 0.56 +2.4 117,346 - HMPREF1058_RS04095 0.57 -0.9 117,353 + HMPREF1058_RS04095 0.57 -0.2 117,389 - HMPREF1058_RS04095 0.60 -1.8 117,414 + HMPREF1058_RS04095 0.62 +0.4 117,414 + HMPREF1058_RS04095 0.62 +1.2 117,477 + HMPREF1058_RS04095 0.67 -0.8 117,477 + HMPREF1058_RS04095 0.67 +3.2 117,482 - HMPREF1058_RS04095 0.67 -1.8 117,613 + HMPREF1058_RS04095 0.77 -0.2 117,761 + HMPREF1058_RS04095 0.88 -1.1 117,761 + HMPREF1058_RS04095 0.88 +0.5 117,762 - HMPREF1058_RS04095 0.89 -0.4 117,765 - HMPREF1058_RS04095 0.89 -0.5 117,833 + -1.8 117,892 - +0.2 117,958 + -0.6 118,031 + HMPREF1058_RS04090 0.17 -3.6 118,031 + HMPREF1058_RS04090 0.17 +0.2 118,032 - HMPREF1058_RS04090 0.18 -2.4 118,032 - HMPREF1058_RS04090 0.18 -1.5 118,044 - HMPREF1058_RS04090 0.22 -0.1 118,254 + -1.2 118,254 + +2.6 118,255 - -0.1 118,266 + -1.8 118,266 + +2.8 118,266 + -0.7 118,278 + -0.5 118,296 - -0.4 118,301 + -0.8 118,302 - -2.1 118,302 - +1.0 118,308 + -0.5 118,400 + -0.8 118,418 + -0.6 118,418 + +0.0 118,438 - HMPREF1058_RS04085 0.11 -1.4 118,564 - HMPREF1058_RS04085 0.20 -1.9 118,592 + HMPREF1058_RS04085 0.22 +1.2 118,595 + HMPREF1058_RS04085 0.22 -0.8 118,635 - HMPREF1058_RS04085 0.25 -0.8 118,728 + HMPREF1058_RS04085 0.31 +1.8 118,849 - HMPREF1058_RS04085 0.40 -3.2 118,851 - HMPREF1058_RS04085 0.40 -0.0 119,100 - HMPREF1058_RS04085 0.57 -0.8 119,102 + HMPREF1058_RS04085 0.57 +0.4 119,102 + HMPREF1058_RS04085 0.57 -1.7 119,102 + HMPREF1058_RS04085 0.57 +1.2 119,205 + HMPREF1058_RS04085 0.65 -2.4 119,246 + HMPREF1058_RS04085 0.67 -0.7 119,249 - HMPREF1058_RS04085 0.68 -0.8 119,249 - HMPREF1058_RS04085 0.68 -0.8
Or see this region's nucleotide sequence