Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0120000 and HMPREF1058_RS02550 are separated by 727 nucleotides HMPREF1058_RS02550 and HMPREF1058_RS02545 are separated by 118 nucleotides
HMPREF1058_RS0120000: HMPREF1058_RS0120000 - hypothetical protein, at 156,526 to 156,732
_RS0120000
HMPREF1058_RS02550: HMPREF1058_RS02550 - NUDIX domain-containing protein, at 157,460 to 157,960
_RS02550
HMPREF1058_RS02545: HMPREF1058_RS02545 - histidine ammonia-lyase, at 158,079 to 159,575
_RS02545
Position (kb) 157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 156.513 kb on + strand at 156.550 kb on + strand, within HMPREF1058_RS0120000 at 156.562 kb on + strand, within HMPREF1058_RS0120000 at 156.679 kb on + strand, within HMPREF1058_RS0120000 at 156.680 kb on - strand, within HMPREF1058_RS0120000 at 156.796 kb on + strand at 156.820 kb on + strand at 156.820 kb on + strand at 156.876 kb on - strand at 156.931 kb on + strand at 156.976 kb on - strand at 156.983 kb on + strand at 156.983 kb on + strand at 157.092 kb on + strand at 157.100 kb on - strand at 157.191 kb on - strand at 157.227 kb on - strand at 157.230 kb on + strand at 157.231 kb on - strand at 157.231 kb on - strand at 157.253 kb on - strand at 157.389 kb on + strand at 157.396 kb on + strand at 157.396 kb on + strand at 157.593 kb on + strand, within HMPREF1058_RS02550 at 157.594 kb on - strand, within HMPREF1058_RS02550 at 157.614 kb on - strand, within HMPREF1058_RS02550 at 157.643 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.645 kb on + strand, within HMPREF1058_RS02550 at 157.646 kb on - strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.647 kb on + strand, within HMPREF1058_RS02550 at 157.648 kb on - strand, within HMPREF1058_RS02550 at 157.652 kb on - strand, within HMPREF1058_RS02550 at 157.698 kb on - strand, within HMPREF1058_RS02550 at 157.740 kb on - strand, within HMPREF1058_RS02550 at 157.832 kb on + strand, within HMPREF1058_RS02550 at 157.838 kb on + strand, within HMPREF1058_RS02550 at 157.838 kb on + strand, within HMPREF1058_RS02550 at 157.839 kb on - strand, within HMPREF1058_RS02550 at 157.926 kb on - strand at 157.928 kb on - strand at 158.008 kb on + strand at 158.019 kb on + strand at 158.019 kb on + strand at 158.029 kb on - strand at 158.032 kb on - strand at 158.034 kb on + strand at 158.057 kb on + strand at 158.145 kb on - strand at 158.163 kb on + strand at 158.269 kb on - strand, within HMPREF1058_RS02545 at 158.270 kb on + strand, within HMPREF1058_RS02545 at 158.270 kb on + strand, within HMPREF1058_RS02545 at 158.271 kb on - strand, within HMPREF1058_RS02545 at 158.271 kb on - strand, within HMPREF1058_RS02545 at 158.328 kb on + strand, within HMPREF1058_RS02545 at 158.328 kb on + strand, within HMPREF1058_RS02545 at 158.328 kb on + strand, within HMPREF1058_RS02545 at 158.328 kb on + strand, within HMPREF1058_RS02545 at 158.328 kb on + strand, within HMPREF1058_RS02545 at 158.329 kb on - strand, within HMPREF1058_RS02545 at 158.381 kb on - strand, within HMPREF1058_RS02545 at 158.447 kb on + strand, within HMPREF1058_RS02545 at 158.523 kb on + strand, within HMPREF1058_RS02545 at 158.523 kb on + strand, within HMPREF1058_RS02545 at 158.563 kb on + strand, within HMPREF1058_RS02545 at 158.564 kb on - strand, within HMPREF1058_RS02545 at 158.944 kb on - strand, within HMPREF1058_RS02545 at 158.950 kb on + strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545 at 158.951 kb on - strand, within HMPREF1058_RS02545
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 remove 156,513 + +1.3 156,550 + HMPREF1058_RS0120000 0.12 -2.9 156,562 + HMPREF1058_RS0120000 0.17 +1.2 156,679 + HMPREF1058_RS0120000 0.74 +0.3 156,680 - HMPREF1058_RS0120000 0.74 -1.4 156,796 + +0.7 156,820 + +0.5 156,820 + +2.0 156,876 - +0.9 156,931 + +1.5 156,976 - +1.8 156,983 + -0.1 156,983 + +0.7 157,092 + +5.1 157,100 - -2.1 157,191 - +1.9 157,227 - -2.1 157,230 + +2.8 157,231 - +2.0 157,231 - -1.4 157,253 - -0.0 157,389 + -0.1 157,396 + +0.3 157,396 + +3.6 157,593 + HMPREF1058_RS02550 0.27 +1.2 157,594 - HMPREF1058_RS02550 0.27 +4.8 157,614 - HMPREF1058_RS02550 0.31 +1.4 157,643 + HMPREF1058_RS02550 0.37 +1.6 157,645 + HMPREF1058_RS02550 0.37 -2.0 157,645 + HMPREF1058_RS02550 0.37 -1.4 157,645 + HMPREF1058_RS02550 0.37 +0.2 157,646 - HMPREF1058_RS02550 0.37 +1.1 157,647 + HMPREF1058_RS02550 0.37 +0.6 157,647 + HMPREF1058_RS02550 0.37 -1.3 157,647 + HMPREF1058_RS02550 0.37 +2.5 157,648 - HMPREF1058_RS02550 0.38 +0.2 157,652 - HMPREF1058_RS02550 0.38 +1.3 157,698 - HMPREF1058_RS02550 0.48 +1.1 157,740 - HMPREF1058_RS02550 0.56 -0.2 157,832 + HMPREF1058_RS02550 0.74 +4.5 157,838 + HMPREF1058_RS02550 0.75 +2.8 157,838 + HMPREF1058_RS02550 0.75 +2.7 157,839 - HMPREF1058_RS02550 0.76 +2.2 157,926 - -0.4 157,928 - -3.1 158,008 + +1.4 158,019 + +1.9 158,019 + -1.7 158,029 - +0.9 158,032 - -0.6 158,034 + -1.6 158,057 + +1.7 158,145 - -0.5 158,163 + +1.0 158,269 - HMPREF1058_RS02545 0.13 +0.1 158,270 + HMPREF1058_RS02545 0.13 +1.3 158,270 + HMPREF1058_RS02545 0.13 +0.0 158,271 - HMPREF1058_RS02545 0.13 -1.1 158,271 - HMPREF1058_RS02545 0.13 -2.1 158,328 + HMPREF1058_RS02545 0.17 -0.7 158,328 + HMPREF1058_RS02545 0.17 -1.4 158,328 + HMPREF1058_RS02545 0.17 -0.1 158,328 + HMPREF1058_RS02545 0.17 -1.0 158,328 + HMPREF1058_RS02545 0.17 -0.7 158,329 - HMPREF1058_RS02545 0.17 -0.7 158,381 - HMPREF1058_RS02545 0.20 +0.5 158,447 + HMPREF1058_RS02545 0.25 +3.4 158,523 + HMPREF1058_RS02545 0.30 +0.6 158,523 + HMPREF1058_RS02545 0.30 -3.7 158,563 + HMPREF1058_RS02545 0.32 +0.9 158,564 - HMPREF1058_RS02545 0.32 +0.6 158,944 - HMPREF1058_RS02545 0.58 -2.6 158,950 + HMPREF1058_RS02545 0.58 +0.8 158,951 - HMPREF1058_RS02545 0.58 +0.9 158,951 - HMPREF1058_RS02545 0.58 +0.1 158,951 - HMPREF1058_RS02545 0.58 +1.4
Or see this region's nucleotide sequence