Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotides HMPREF1058_RS10655 and HMPREF1058_RS10650 are separated by 1 nucleotides HMPREF1058_RS10650 and HMPREF1058_RS10645 are separated by 12 nucleotides
HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422
_RS10660
HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911
_RS10655
HMPREF1058_RS10650: HMPREF1058_RS10650 - hypothetical protein, at 608,913 to 609,455
_RS10650
HMPREF1058_RS10645: HMPREF1058_RS10645 - ATP-binding protein, at 609,468 to 611,042
_RS10645
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.068 kb on + strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.122 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.200 kb on - strand, within HMPREF1058_RS10660 at 608.272 kb on + strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.280 kb on - strand, within HMPREF1058_RS10660 at 608.314 kb on + strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.370 kb on + strand at 608.371 kb on - strand at 608.384 kb on + strand at 608.391 kb on + strand at 608.392 kb on - strand at 608.421 kb on + strand at 608.423 kb on - strand at 608.435 kb on + strand at 608.539 kb on - strand at 608.542 kb on + strand at 608.543 kb on - strand at 608.543 kb on - strand at 608.636 kb on + strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.716 kb on - strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.770 kb on + strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.841 kb on - strand, within HMPREF1058_RS10655 at 608.847 kb on - strand, within HMPREF1058_RS10655 at 608.911 kb on + strand at 608.925 kb on + strand at 608.926 kb on - strand at 608.926 kb on - strand at 609.068 kb on + strand, within HMPREF1058_RS10650 at 609.081 kb on - strand, within HMPREF1058_RS10650 at 609.177 kb on + strand, within HMPREF1058_RS10650 at 609.180 kb on + strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.230 kb on - strand, within HMPREF1058_RS10650 at 609.240 kb on + strand, within HMPREF1058_RS10650 at 609.241 kb on - strand, within HMPREF1058_RS10650 at 609.470 kb on - strand at 609.499 kb on - strand at 609.574 kb on + strand at 609.588 kb on + strand at 609.640 kb on + strand, within HMPREF1058_RS10645 at 609.646 kb on + strand, within HMPREF1058_RS10645 at 610.043 kb on - strand, within HMPREF1058_RS10645 at 610.043 kb on - strand, within HMPREF1058_RS10645 at 610.050 kb on - strand, within HMPREF1058_RS10645 at 610.162 kb on + strand, within HMPREF1058_RS10645 at 610.240 kb on + strand, within HMPREF1058_RS10645 at 610.241 kb on + strand, within HMPREF1058_RS10645 at 610.242 kb on + strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.316 kb on + strand, within HMPREF1058_RS10645 at 610.361 kb on - strand, within HMPREF1058_RS10645 at 610.382 kb on + strand, within HMPREF1058_RS10645
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 remove 608,040 + HMPREF1058_RS10660 0.48 -3.9 608,040 + HMPREF1058_RS10660 0.48 -0.4 608,061 + HMPREF1058_RS10660 0.51 -1.1 608,061 + HMPREF1058_RS10660 0.51 +0.9 608,062 - HMPREF1058_RS10660 0.51 +1.4 608,062 - HMPREF1058_RS10660 0.51 +1.3 608,062 - HMPREF1058_RS10660 0.51 +1.2 608,063 + HMPREF1058_RS10660 0.51 +0.9 608,063 + HMPREF1058_RS10660 0.51 +0.5 608,068 + HMPREF1058_RS10660 0.52 +1.8 608,103 - HMPREF1058_RS10660 0.57 -1.3 608,103 - HMPREF1058_RS10660 0.57 +1.8 608,122 - HMPREF1058_RS10660 0.59 +2.1 608,192 - HMPREF1058_RS10660 0.69 -0.5 608,192 - HMPREF1058_RS10660 0.69 -0.7 608,200 - HMPREF1058_RS10660 0.70 -1.1 608,272 + HMPREF1058_RS10660 0.80 -0.6 608,276 - HMPREF1058_RS10660 0.80 +1.5 608,276 - HMPREF1058_RS10660 0.80 -1.1 608,280 - HMPREF1058_RS10660 0.81 -0.1 608,314 + HMPREF1058_RS10660 0.85 -1.1 608,315 - HMPREF1058_RS10660 0.85 +0.5 608,315 - HMPREF1058_RS10660 0.85 -2.2 608,315 - HMPREF1058_RS10660 0.85 +0.7 608,315 - HMPREF1058_RS10660 0.85 +2.4 608,370 + -0.5 608,371 - -1.4 608,384 + +3.0 608,391 + +0.8 608,392 - +1.3 608,421 + +1.5 608,423 - +1.9 608,435 + -1.3 608,539 - +3.2 608,542 + -0.5 608,543 - -1.1 608,543 - +0.6 608,636 + HMPREF1058_RS10655 0.28 +0.8 608,649 - HMPREF1058_RS10655 0.31 -0.3 608,649 - HMPREF1058_RS10655 0.31 +0.1 608,711 + HMPREF1058_RS10655 0.47 +1.2 608,711 + HMPREF1058_RS10655 0.47 +0.6 608,716 - HMPREF1058_RS10655 0.49 -0.5 608,759 + HMPREF1058_RS10655 0.60 -2.6 608,759 + HMPREF1058_RS10655 0.60 +1.6 608,770 + HMPREF1058_RS10655 0.63 -1.7 608,771 - HMPREF1058_RS10655 0.63 +0.9 608,771 - HMPREF1058_RS10655 0.63 +0.7 608,841 - HMPREF1058_RS10655 0.81 -2.2 608,847 - HMPREF1058_RS10655 0.83 -0.6 608,911 + -0.4 608,925 + +1.7 608,926 - +0.6 608,926 - -0.2 609,068 + HMPREF1058_RS10650 0.29 -1.3 609,081 - HMPREF1058_RS10650 0.31 -2.4 609,177 + HMPREF1058_RS10650 0.49 -0.5 609,180 + HMPREF1058_RS10650 0.49 -2.1 609,181 - HMPREF1058_RS10650 0.49 -0.7 609,181 - HMPREF1058_RS10650 0.49 -0.3 609,230 - HMPREF1058_RS10650 0.58 -4.1 609,240 + HMPREF1058_RS10650 0.60 -1.1 609,241 - HMPREF1058_RS10650 0.60 -3.6 609,470 - +1.5 609,499 - -0.7 609,574 + +0.6 609,588 + +0.5 609,640 + HMPREF1058_RS10645 0.11 -2.4 609,646 + HMPREF1058_RS10645 0.11 +0.7 610,043 - HMPREF1058_RS10645 0.37 +1.2 610,043 - HMPREF1058_RS10645 0.37 +2.1 610,050 - HMPREF1058_RS10645 0.37 +1.1 610,162 + HMPREF1058_RS10645 0.44 -1.1 610,240 + HMPREF1058_RS10645 0.49 +1.5 610,241 + HMPREF1058_RS10645 0.49 +0.2 610,242 + HMPREF1058_RS10645 0.49 -2.4 610,243 - HMPREF1058_RS10645 0.49 -0.7 610,243 - HMPREF1058_RS10645 0.49 -0.1 610,316 + HMPREF1058_RS10645 0.54 -4.4 610,361 - HMPREF1058_RS10645 0.57 -0.0 610,382 + HMPREF1058_RS10645 0.58 -0.5
Or see this region's nucleotide sequence