Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10620

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10625 and HMPREF1058_RS10620 are separated by 3 nucleotidesHMPREF1058_RS10620 and HMPREF1058_RS10615 overlap by 4 nucleotidesHMPREF1058_RS10615 and HMPREF1058_RS10610 are separated by 5 nucleotides HMPREF1058_RS10625: HMPREF1058_RS10625 - beta-ketoacyl synthase chain length factor, at 614,295 to 615,248 _RS10625 HMPREF1058_RS10620: HMPREF1058_RS10620 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 615,252 to 616,442 _RS10620 HMPREF1058_RS10615: HMPREF1058_RS10615 - acyl carrier protein, at 616,439 to 616,696 _RS10615 HMPREF1058_RS10610: HMPREF1058_RS10610 - beta-ACP synthase, at 616,702 to 618,432 _RS10610 Position (kb) 615 616 617Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 614.276 kb on - strandat 614.279 kb on - strandat 614.336 kb on + strandat 614.353 kb on + strandat 614.353 kb on + strandat 614.354 kb on - strandat 614.354 kb on - strandat 614.417 kb on - strand, within HMPREF1058_RS10625at 614.640 kb on - strand, within HMPREF1058_RS10625at 614.643 kb on + strand, within HMPREF1058_RS10625at 614.756 kb on + strand, within HMPREF1058_RS10625at 614.772 kb on + strand, within HMPREF1058_RS10625at 614.797 kb on - strand, within HMPREF1058_RS10625at 614.835 kb on + strand, within HMPREF1058_RS10625at 614.836 kb on - strand, within HMPREF1058_RS10625at 614.868 kb on + strand, within HMPREF1058_RS10625at 614.872 kb on + strand, within HMPREF1058_RS10625at 614.881 kb on + strand, within HMPREF1058_RS10625at 614.883 kb on - strand, within HMPREF1058_RS10625at 614.884 kb on + strand, within HMPREF1058_RS10625at 614.885 kb on - strand, within HMPREF1058_RS10625at 614.885 kb on - strand, within HMPREF1058_RS10625at 614.892 kb on + strand, within HMPREF1058_RS10625at 614.911 kb on - strand, within HMPREF1058_RS10625at 614.927 kb on + strand, within HMPREF1058_RS10625at 614.996 kb on + strand, within HMPREF1058_RS10625at 615.052 kb on - strand, within HMPREF1058_RS10625at 615.160 kb on + strandat 615.235 kb on + strandat 615.236 kb on - strandat 615.236 kb on - strandat 615.236 kb on - strandat 615.236 kb on - strandat 615.249 kb on - strandat 615.249 kb on - strandat 615.249 kb on - strandat 615.249 kb on - strandat 615.249 kb on - strandat 615.318 kb on + strandat 615.318 kb on + strandat 615.401 kb on + strand, within HMPREF1058_RS10620at 615.442 kb on - strand, within HMPREF1058_RS10620at 615.576 kb on - strand, within HMPREF1058_RS10620at 615.583 kb on - strand, within HMPREF1058_RS10620at 615.591 kb on - strand, within HMPREF1058_RS10620at 615.592 kb on + strand, within HMPREF1058_RS10620at 615.592 kb on + strand, within HMPREF1058_RS10620at 615.593 kb on - strand, within HMPREF1058_RS10620at 615.593 kb on - strand, within HMPREF1058_RS10620at 615.598 kb on - strand, within HMPREF1058_RS10620at 615.737 kb on + strand, within HMPREF1058_RS10620at 615.737 kb on + strand, within HMPREF1058_RS10620at 615.737 kb on + strand, within HMPREF1058_RS10620at 615.738 kb on - strand, within HMPREF1058_RS10620at 615.741 kb on - strand, within HMPREF1058_RS10620at 616.056 kb on - strand, within HMPREF1058_RS10620at 616.065 kb on + strand, within HMPREF1058_RS10620at 616.065 kb on + strand, within HMPREF1058_RS10620at 616.065 kb on + strand, within HMPREF1058_RS10620at 616.237 kb on + strand, within HMPREF1058_RS10620at 616.237 kb on + strand, within HMPREF1058_RS10620at 616.430 kb on - strandat 616.462 kb on - strandat 616.474 kb on + strand, within HMPREF1058_RS10615at 616.475 kb on - strand, within HMPREF1058_RS10615at 616.530 kb on + strand, within HMPREF1058_RS10615at 616.531 kb on - strand, within HMPREF1058_RS10615at 616.531 kb on - strand, within HMPREF1058_RS10615at 616.704 kb on - strandat 616.704 kb on - strandat 616.726 kb on + strandat 616.737 kb on - strandat 616.801 kb on + strandat 616.803 kb on + strandat 616.804 kb on - strandat 616.804 kb on - strandat 616.804 kb on - strandat 616.804 kb on - strandat 616.835 kb on + strandat 616.870 kb on + strandat 616.870 kb on + strandat 616.870 kb on + strandat 616.903 kb on + strand, within HMPREF1058_RS10610at 616.903 kb on + strand, within HMPREF1058_RS10610at 616.903 kb on + strand, within HMPREF1058_RS10610at 616.927 kb on + strand, within HMPREF1058_RS10610at 617.049 kb on + strand, within HMPREF1058_RS10610at 617.063 kb on + strand, within HMPREF1058_RS10610at 617.145 kb on + strand, within HMPREF1058_RS10610at 617.145 kb on + strand, within HMPREF1058_RS10610at 617.145 kb on + strand, within HMPREF1058_RS10610at 617.155 kb on - strand, within HMPREF1058_RS10610at 617.286 kb on + strand, within HMPREF1058_RS10610at 617.286 kb on + strand, within HMPREF1058_RS10610at 617.289 kb on - strand, within HMPREF1058_RS10610at 617.289 kb on - strand, within HMPREF1058_RS10610at 617.347 kb on + strand, within HMPREF1058_RS10610

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
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614,276 - -0.5
614,279 - +1.4
614,336 + +2.1
614,353 + +3.0
614,353 + -1.1
614,354 - -0.7
614,354 - +0.9
614,417 - HMPREF1058_RS10625 0.13 -0.3
614,640 - HMPREF1058_RS10625 0.36 +0.9
614,643 + HMPREF1058_RS10625 0.36 -0.4
614,756 + HMPREF1058_RS10625 0.48 +0.4
614,772 + HMPREF1058_RS10625 0.50 -0.2
614,797 - HMPREF1058_RS10625 0.53 +0.5
614,835 + HMPREF1058_RS10625 0.57 -1.2
614,836 - HMPREF1058_RS10625 0.57 -0.9
614,868 + HMPREF1058_RS10625 0.60 +0.2
614,872 + HMPREF1058_RS10625 0.60 +1.1
614,881 + HMPREF1058_RS10625 0.61 -2.1
614,883 - HMPREF1058_RS10625 0.62 -2.1
614,884 + HMPREF1058_RS10625 0.62 -1.9
614,885 - HMPREF1058_RS10625 0.62 -0.6
614,885 - HMPREF1058_RS10625 0.62 -0.4
614,892 + HMPREF1058_RS10625 0.63 -5.1
614,911 - HMPREF1058_RS10625 0.65 +0.4
614,927 + HMPREF1058_RS10625 0.66 -1.5
614,996 + HMPREF1058_RS10625 0.73 +1.2
615,052 - HMPREF1058_RS10625 0.79 -2.2
615,160 + -2.1
615,235 + +0.6
615,236 - +0.8
615,236 - +1.0
615,236 - +1.6
615,236 - -1.6
615,249 - -0.3
615,249 - -2.8
615,249 - -0.3
615,249 - -0.8
615,249 - +0.5
615,318 + -0.1
615,318 + -1.5
615,401 + HMPREF1058_RS10620 0.13 +2.3
615,442 - HMPREF1058_RS10620 0.16 -2.5
615,576 - HMPREF1058_RS10620 0.27 -0.9
615,583 - HMPREF1058_RS10620 0.28 +1.1
615,591 - HMPREF1058_RS10620 0.28 -0.3
615,592 + HMPREF1058_RS10620 0.29 +1.3
615,592 + HMPREF1058_RS10620 0.29 +1.5
615,593 - HMPREF1058_RS10620 0.29 +0.5
615,593 - HMPREF1058_RS10620 0.29 +1.2
615,598 - HMPREF1058_RS10620 0.29 +1.7
615,737 + HMPREF1058_RS10620 0.41 -1.1
615,737 + HMPREF1058_RS10620 0.41 +0.5
615,737 + HMPREF1058_RS10620 0.41 +1.4
615,738 - HMPREF1058_RS10620 0.41 +0.9
615,741 - HMPREF1058_RS10620 0.41 -1.7
616,056 - HMPREF1058_RS10620 0.68 +1.5
616,065 + HMPREF1058_RS10620 0.68 -2.9
616,065 + HMPREF1058_RS10620 0.68 +1.6
616,065 + HMPREF1058_RS10620 0.68 -1.3
616,237 + HMPREF1058_RS10620 0.83 -1.9
616,237 + HMPREF1058_RS10620 0.83 +1.3
616,430 - +0.7
616,462 - +0.3
616,474 + HMPREF1058_RS10615 0.14 -0.3
616,475 - HMPREF1058_RS10615 0.14 -2.1
616,530 + HMPREF1058_RS10615 0.35 +0.2
616,531 - HMPREF1058_RS10615 0.36 +0.3
616,531 - HMPREF1058_RS10615 0.36 +1.5
616,704 - -1.1
616,704 - -0.1
616,726 + -0.6
616,737 - -0.8
616,801 + +0.4
616,803 + -2.1
616,804 - +0.3
616,804 - +0.4
616,804 - -2.7
616,804 - +3.3
616,835 + -1.7
616,870 + -2.6
616,870 + -1.1
616,870 + -1.1
616,903 + HMPREF1058_RS10610 0.12 -1.1
616,903 + HMPREF1058_RS10610 0.12 -0.2
616,903 + HMPREF1058_RS10610 0.12 +2.7
616,927 + HMPREF1058_RS10610 0.13 +0.5
617,049 + HMPREF1058_RS10610 0.20 -1.1
617,063 + HMPREF1058_RS10610 0.21 -0.4
617,145 + HMPREF1058_RS10610 0.26 -0.6
617,145 + HMPREF1058_RS10610 0.26 -2.7
617,145 + HMPREF1058_RS10610 0.26 -0.2
617,155 - HMPREF1058_RS10610 0.26 -2.6
617,286 + HMPREF1058_RS10610 0.34 +0.1
617,286 + HMPREF1058_RS10610 0.34 +2.2
617,289 - HMPREF1058_RS10610 0.34 +1.1
617,289 - HMPREF1058_RS10610 0.34 -0.1
617,347 + HMPREF1058_RS10610 0.37 +0.9

Or see this region's nucleotide sequence