Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07070

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotidesHMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotidesHMPREF1058_RS07070 and HMPREF1058_RS07065 are separated by 332 nucleotides HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164 _RS07080 HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872 _RS07075 HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957 _RS07070 HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384 _RS07065 Position (kb) 322 323 324Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 322.024 kb on + strand, within HMPREF1058_RS07080at 322.025 kb on - strand, within HMPREF1058_RS07080at 322.025 kb on - strand, within HMPREF1058_RS07080at 322.042 kb on - strand, within HMPREF1058_RS07080at 322.046 kb on - strand, within HMPREF1058_RS07080at 322.149 kb on + strandat 322.149 kb on + strandat 322.149 kb on + strandat 322.305 kb on + strandat 322.307 kb on + strandat 322.327 kb on + strandat 322.327 kb on + strandat 322.329 kb on + strandat 322.348 kb on + strandat 322.349 kb on - strandat 322.352 kb on - strandat 322.352 kb on - strandat 322.386 kb on - strandat 322.454 kb on - strand, within HMPREF1058_RS07075at 322.465 kb on + strand, within HMPREF1058_RS07075at 322.465 kb on + strand, within HMPREF1058_RS07075at 322.626 kb on - strand, within HMPREF1058_RS07075at 322.634 kb on - strand, within HMPREF1058_RS07075at 322.635 kb on + strand, within HMPREF1058_RS07075at 322.635 kb on + strand, within HMPREF1058_RS07075at 322.636 kb on - strand, within HMPREF1058_RS07075at 322.641 kb on - strand, within HMPREF1058_RS07075at 322.643 kb on + strand, within HMPREF1058_RS07075at 322.643 kb on + strand, within HMPREF1058_RS07075at 322.651 kb on - strand, within HMPREF1058_RS07075at 322.691 kb on - strand, within HMPREF1058_RS07075at 322.709 kb on - strand, within HMPREF1058_RS07075at 322.709 kb on - strand, within HMPREF1058_RS07075at 322.728 kb on + strand, within HMPREF1058_RS07075at 322.729 kb on - strand, within HMPREF1058_RS07075at 322.743 kb on + strand, within HMPREF1058_RS07075at 322.819 kb on + strand, within HMPREF1058_RS07075at 322.853 kb on + strandat 322.856 kb on + strandat 322.856 kb on + strandat 322.857 kb on - strandat 322.857 kb on - strandat 322.858 kb on + strandat 322.860 kb on + strandat 322.861 kb on - strandat 322.861 kb on - strandat 322.861 kb on - strandat 322.865 kb on + strandat 322.865 kb on + strandat 322.866 kb on - strandat 322.867 kb on + strandat 322.871 kb on - strandat 322.904 kb on - strandat 322.906 kb on - strandat 322.910 kb on + strandat 322.959 kb on + strandat 323.005 kb on - strandat 323.005 kb on - strandat 323.008 kb on - strandat 323.041 kb on + strandat 323.042 kb on - strandat 323.052 kb on + strandat 323.170 kb on + strandat 323.196 kb on - strand, within HMPREF1058_RS07070at 323.196 kb on - strand, within HMPREF1058_RS07070at 323.207 kb on + strand, within HMPREF1058_RS07070at 323.208 kb on - strand, within HMPREF1058_RS07070at 323.280 kb on - strand, within HMPREF1058_RS07070at 323.338 kb on + strand, within HMPREF1058_RS07070at 323.353 kb on + strand, within HMPREF1058_RS07070at 323.369 kb on + strand, within HMPREF1058_RS07070at 323.369 kb on + strand, within HMPREF1058_RS07070at 323.372 kb on + strand, within HMPREF1058_RS07070at 323.397 kb on + strand, within HMPREF1058_RS07070at 323.408 kb on + strand, within HMPREF1058_RS07070at 323.408 kb on + strand, within HMPREF1058_RS07070at 323.502 kb on + strand, within HMPREF1058_RS07070at 323.510 kb on - strand, within HMPREF1058_RS07070at 323.534 kb on + strand, within HMPREF1058_RS07070at 323.616 kb on - strand, within HMPREF1058_RS07070at 323.709 kb on - strand, within HMPREF1058_RS07070at 323.709 kb on - strand, within HMPREF1058_RS07070at 323.712 kb on + strand, within HMPREF1058_RS07070at 323.713 kb on - strand, within HMPREF1058_RS07070at 323.725 kb on - strand, within HMPREF1058_RS07070at 323.725 kb on - strand, within HMPREF1058_RS07070at 323.732 kb on + strand, within HMPREF1058_RS07070at 323.733 kb on - strand, within HMPREF1058_RS07070at 323.733 kb on - strand, within HMPREF1058_RS07070at 323.798 kb on + strand, within HMPREF1058_RS07070at 323.798 kb on + strand, within HMPREF1058_RS07070at 323.799 kb on - strand, within HMPREF1058_RS07070at 323.858 kb on + strand, within HMPREF1058_RS07070at 323.922 kb on - strandat 323.965 kb on + strandat 323.965 kb on + strandat 323.966 kb on - strandat 324.002 kb on + strandat 324.004 kb on + strandat 324.004 kb on + strandat 324.005 kb on - strandat 324.005 kb on - strandat 324.005 kb on - strandat 324.006 kb on + strandat 324.007 kb on - strandat 324.007 kb on - strandat 324.027 kb on + strandat 324.027 kb on + strandat 324.041 kb on - strandat 324.042 kb on + strandat 324.042 kb on + strandat 324.043 kb on - strandat 324.045 kb on - strandat 324.045 kb on - strandat 324.056 kb on - strandat 324.140 kb on + strandat 324.140 kb on + strandat 324.141 kb on - strandat 324.193 kb on - strandat 324.242 kb on - strandat 324.308 kb on - strandat 324.325 kb on - strandat 324.412 kb on - strand, within HMPREF1058_RS07065at 324.495 kb on + strand, within HMPREF1058_RS07065at 324.540 kb on - strand, within HMPREF1058_RS07065at 324.544 kb on + strand, within HMPREF1058_RS07065at 324.550 kb on + strand, within HMPREF1058_RS07065at 324.551 kb on - strand, within HMPREF1058_RS07065at 324.592 kb on + strand, within HMPREF1058_RS07065at 324.639 kb on - strand, within HMPREF1058_RS07065at 324.687 kb on - strand, within HMPREF1058_RS07065at 324.732 kb on + strand, within HMPREF1058_RS07065at 324.732 kb on + strand, within HMPREF1058_RS07065at 324.737 kb on + strand, within HMPREF1058_RS07065at 324.738 kb on - strand, within HMPREF1058_RS07065at 324.761 kb on - strand, within HMPREF1058_RS07065at 324.844 kb on + strand, within HMPREF1058_RS07065at 324.845 kb on - strand, within HMPREF1058_RS07065at 324.845 kb on - strand, within HMPREF1058_RS07065at 324.890 kb on - strand, within HMPREF1058_RS07065at 324.919 kb on + strand, within HMPREF1058_RS07065at 324.919 kb on + strand, within HMPREF1058_RS07065at 324.954 kb on + strand, within HMPREF1058_RS07065at 324.955 kb on - strand, within HMPREF1058_RS07065at 324.955 kb on - strand, within HMPREF1058_RS07065

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
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322,024 + HMPREF1058_RS07080 0.29 +0.2
322,025 - HMPREF1058_RS07080 0.29 +1.2
322,025 - HMPREF1058_RS07080 0.29 +1.6
322,042 - HMPREF1058_RS07080 0.38 -3.7
322,046 - HMPREF1058_RS07080 0.40 -0.5
322,149 + -0.8
322,149 + -0.6
322,149 + -2.6
322,305 + -0.6
322,307 + +3.7
322,327 + +0.2
322,327 + -3.0
322,329 + +0.9
322,348 + -2.5
322,349 - -3.2
322,352 - +0.2
322,352 - -1.4
322,386 - -3.0
322,454 - HMPREF1058_RS07075 0.16 -1.3
322,465 + HMPREF1058_RS07075 0.18 -0.8
322,465 + HMPREF1058_RS07075 0.18 +0.2
322,626 - HMPREF1058_RS07075 0.50 -1.8
322,634 - HMPREF1058_RS07075 0.52 +0.2
322,635 + HMPREF1058_RS07075 0.52 +0.8
322,635 + HMPREF1058_RS07075 0.52 -1.4
322,636 - HMPREF1058_RS07075 0.52 -0.4
322,641 - HMPREF1058_RS07075 0.53 -0.8
322,643 + HMPREF1058_RS07075 0.54 -0.8
322,643 + HMPREF1058_RS07075 0.54 +0.2
322,651 - HMPREF1058_RS07075 0.55 -1.8
322,691 - HMPREF1058_RS07075 0.63 +0.8
322,709 - HMPREF1058_RS07075 0.67 -3.5
322,709 - HMPREF1058_RS07075 0.67 -2.2
322,728 + HMPREF1058_RS07075 0.71 -1.4
322,729 - HMPREF1058_RS07075 0.71 -0.6
322,743 + HMPREF1058_RS07075 0.74 -2.4
322,819 + HMPREF1058_RS07075 0.89 -2.2
322,853 + -0.8
322,856 + -1.1
322,856 + -1.2
322,857 - -1.4
322,857 - -1.8
322,858 + +0.2
322,860 + -0.4
322,861 - +1.4
322,861 - -0.2
322,861 - +0.9
322,865 + -1.2
322,865 + -5.0
322,866 - +3.4
322,867 + -0.8
322,871 - -1.8
322,904 - -0.8
322,906 - -1.7
322,910 + -0.2
322,959 + -0.8
323,005 - -0.3
323,005 - -1.1
323,008 - +1.5
323,041 + -2.2
323,042 - -0.7
323,052 + +0.2
323,170 + +0.2
323,196 - HMPREF1058_RS07070 0.21 -0.2
323,196 - HMPREF1058_RS07070 0.21 +3.4
323,207 + HMPREF1058_RS07070 0.22 -0.6
323,208 - HMPREF1058_RS07070 0.22 -2.0
323,280 - HMPREF1058_RS07070 0.29 -2.9
323,338 + HMPREF1058_RS07070 0.35 +0.2
323,353 + HMPREF1058_RS07070 0.37 -2.4
323,369 + HMPREF1058_RS07070 0.39 +2.7
323,369 + HMPREF1058_RS07070 0.39 -1.2
323,372 + HMPREF1058_RS07070 0.39 -0.6
323,397 + HMPREF1058_RS07070 0.42 -3.3
323,408 + HMPREF1058_RS07070 0.43 -0.7
323,408 + HMPREF1058_RS07070 0.43 -1.8
323,502 + HMPREF1058_RS07070 0.53 -1.5
323,510 - HMPREF1058_RS07070 0.53 -3.0
323,534 + HMPREF1058_RS07070 0.56 +0.2
323,616 - HMPREF1058_RS07070 0.64 +0.2
323,709 - HMPREF1058_RS07070 0.74 +0.5
323,709 - HMPREF1058_RS07070 0.74 -2.6
323,712 + HMPREF1058_RS07070 0.74 -2.3
323,713 - HMPREF1058_RS07070 0.74 -0.2
323,725 - HMPREF1058_RS07070 0.76 +0.2
323,725 - HMPREF1058_RS07070 0.76 +0.2
323,732 + HMPREF1058_RS07070 0.76 +0.8
323,733 - HMPREF1058_RS07070 0.77 -1.4
323,733 - HMPREF1058_RS07070 0.77 +0.4
323,798 + HMPREF1058_RS07070 0.83 -1.3
323,798 + HMPREF1058_RS07070 0.83 +0.7
323,799 - HMPREF1058_RS07070 0.83 -1.4
323,858 + HMPREF1058_RS07070 0.90 +1.8
323,922 - +3.5
323,965 + +0.6
323,965 + -2.8
323,966 - -0.3
324,002 + +1.2
324,004 + -3.5
324,004 + -0.2
324,005 - +0.4
324,005 - -0.4
324,005 - -0.1
324,006 + +0.2
324,007 - -2.5
324,007 - +0.6
324,027 + -0.6
324,027 + -1.4
324,041 - +1.6
324,042 + +0.5
324,042 + +0.8
324,043 - -1.3
324,045 - -1.0
324,045 - -0.3
324,056 - -0.8
324,140 + -0.6
324,140 + -2.2
324,141 - +0.6
324,193 - -1.8
324,242 - -3.6
324,308 - -1.2
324,325 - -2.6
324,412 - HMPREF1058_RS07065 0.11 -1.2
324,495 + HMPREF1058_RS07065 0.19 -2.4
324,540 - HMPREF1058_RS07065 0.23 -2.6
324,544 + HMPREF1058_RS07065 0.23 -1.8
324,550 + HMPREF1058_RS07065 0.24 -0.8
324,551 - HMPREF1058_RS07065 0.24 -3.7
324,592 + HMPREF1058_RS07065 0.28 -2.4
324,639 - HMPREF1058_RS07065 0.32 +0.2
324,687 - HMPREF1058_RS07065 0.36 -2.3
324,732 + HMPREF1058_RS07065 0.40 -2.9
324,732 + HMPREF1058_RS07065 0.40 -2.6
324,737 + HMPREF1058_RS07065 0.41 -1.4
324,738 - HMPREF1058_RS07065 0.41 -2.8
324,761 - HMPREF1058_RS07065 0.43 -2.2
324,844 + HMPREF1058_RS07065 0.51 -1.4
324,845 - HMPREF1058_RS07065 0.51 -1.2
324,845 - HMPREF1058_RS07065 0.51 +0.2
324,890 - HMPREF1058_RS07065 0.55 -1.8
324,919 + HMPREF1058_RS07065 0.57 -0.8
324,919 + HMPREF1058_RS07065 0.57 -2.4
324,954 + HMPREF1058_RS07065 0.61 -1.8
324,955 - HMPREF1058_RS07065 0.61 -0.8
324,955 - HMPREF1058_RS07065 0.61 -0.8

Or see this region's nucleotide sequence