Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05215 and HMPREF1058_RS05210 are separated by 16 nucleotides HMPREF1058_RS05210 and HMPREF1058_RS05205 are separated by 42 nucleotides HMPREF1058_RS05205 and HMPREF1058_RS05200 are separated by 190 nucleotides HMPREF1058_RS05200 and HMPREF1058_RS21005 are separated by 97 nucleotides
HMPREF1058_RS05215: HMPREF1058_RS05215 - GtrA family protein, at 214,933 to 215,322
_RS05215
HMPREF1058_RS05210: HMPREF1058_RS05210 - SDR family oxidoreductase, at 215,339 to 216,214
_RS05210
HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198
_RS05205
HMPREF1058_RS05200: HMPREF1058_RS05200 - MaoC family dehydratase, at 217,389 to 217,853
_RS05200
HMPREF1058_RS21005: HMPREF1058_RS21005 - nitrous oxide-stimulated promoter family protein, at 217,951 to 218,244
_RS21005
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.259 kb on + strand, within HMPREF1058_RS05215 at 215.268 kb on - strand, within HMPREF1058_RS05215 at 215.305 kb on - strand at 215.352 kb on - strand at 215.375 kb on + strand at 215.559 kb on - strand, within HMPREF1058_RS05210 at 215.598 kb on + strand, within HMPREF1058_RS05210 at 215.832 kb on + strand, within HMPREF1058_RS05210 at 215.876 kb on - strand, within HMPREF1058_RS05210 at 215.951 kb on + strand, within HMPREF1058_RS05210 at 216.235 kb on + strand at 216.249 kb on - strand at 216.264 kb on + strand at 216.315 kb on - strand at 216.350 kb on + strand at 216.356 kb on - strand, within HMPREF1058_RS05205 at 216.356 kb on - strand, within HMPREF1058_RS05205 at 216.380 kb on + strand, within HMPREF1058_RS05205 at 216.406 kb on + strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.412 kb on - strand, within HMPREF1058_RS05205 at 216.480 kb on + strand, within HMPREF1058_RS05205 at 216.532 kb on - strand, within HMPREF1058_RS05205 at 216.556 kb on - strand, within HMPREF1058_RS05205 at 216.584 kb on + strand, within HMPREF1058_RS05205 at 216.584 kb on + strand, within HMPREF1058_RS05205 at 216.585 kb on - strand, within HMPREF1058_RS05205 at 216.676 kb on - strand, within HMPREF1058_RS05205 at 216.760 kb on - strand, within HMPREF1058_RS05205 at 216.826 kb on - strand, within HMPREF1058_RS05205 at 216.830 kb on - strand, within HMPREF1058_RS05205 at 216.859 kb on + strand, within HMPREF1058_RS05205 at 216.860 kb on - strand, within HMPREF1058_RS05205 at 216.889 kb on + strand, within HMPREF1058_RS05205 at 216.890 kb on - strand, within HMPREF1058_RS05205 at 216.892 kb on - strand, within HMPREF1058_RS05205 at 216.892 kb on - strand, within HMPREF1058_RS05205 at 216.940 kb on - strand, within HMPREF1058_RS05205 at 216.979 kb on + strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 217.026 kb on + strand, within HMPREF1058_RS05205 at 217.191 kb on + strand at 217.230 kb on - strand at 217.230 kb on - strand at 217.235 kb on - strand at 217.280 kb on + strand at 217.281 kb on - strand at 217.282 kb on + strand at 217.332 kb on + strand at 217.358 kb on + strand at 217.579 kb on + strand, within HMPREF1058_RS05200 at 217.580 kb on - strand, within HMPREF1058_RS05200 at 217.629 kb on - strand, within HMPREF1058_RS05200 at 217.629 kb on - strand, within HMPREF1058_RS05200 at 217.662 kb on + strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.670 kb on + strand, within HMPREF1058_RS05200 at 217.670 kb on + strand, within HMPREF1058_RS05200 at 217.671 kb on - strand, within HMPREF1058_RS05200 at 217.674 kb on - strand, within HMPREF1058_RS05200 at 217.710 kb on + strand, within HMPREF1058_RS05200 at 217.780 kb on + strand, within HMPREF1058_RS05200 at 217.835 kb on + strand at 217.848 kb on - strand at 217.874 kb on + strand at 217.877 kb on - strand at 217.881 kb on + strand at 217.882 kb on - strand at 218.063 kb on - strand, within HMPREF1058_RS21005 at 218.063 kb on - strand, within HMPREF1058_RS21005 at 218.088 kb on + strand, within HMPREF1058_RS21005 at 218.129 kb on + strand at 218.137 kb on + strand, within HMPREF1058_RS21005 at 218.138 kb on - strand, within HMPREF1058_RS21005 at 218.140 kb on - strand, within HMPREF1058_RS21005 at 218.171 kb on + strand, within HMPREF1058_RS21005
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 remove 215,259 + HMPREF1058_RS05215 0.84 +1.1 215,268 - HMPREF1058_RS05215 0.86 +1.1 215,305 - +0.8 215,352 - +0.1 215,375 + +2.5 215,559 - HMPREF1058_RS05210 0.25 -0.1 215,598 + HMPREF1058_RS05210 0.30 -0.9 215,832 + HMPREF1058_RS05210 0.56 +0.1 215,876 - HMPREF1058_RS05210 0.61 -0.9 215,951 + HMPREF1058_RS05210 0.70 +2.1 216,235 + +3.0 216,249 - -0.9 216,264 + +0.9 216,315 - +2.4 216,350 + +0.8 216,356 - HMPREF1058_RS05205 0.11 -2.1 216,356 - HMPREF1058_RS05205 0.11 +2.7 216,380 + HMPREF1058_RS05205 0.13 +1.2 216,406 + HMPREF1058_RS05205 0.16 -2.5 216,407 - HMPREF1058_RS05205 0.16 -2.5 216,407 - HMPREF1058_RS05205 0.16 +1.5 216,407 - HMPREF1058_RS05205 0.16 +1.4 216,412 - HMPREF1058_RS05205 0.16 -1.8 216,480 + HMPREF1058_RS05205 0.24 -2.9 216,532 - HMPREF1058_RS05205 0.29 -0.6 216,556 - HMPREF1058_RS05205 0.32 -1.3 216,584 + HMPREF1058_RS05205 0.35 -1.1 216,584 + HMPREF1058_RS05205 0.35 -0.2 216,585 - HMPREF1058_RS05205 0.35 +1.7 216,676 - HMPREF1058_RS05205 0.44 -2.2 216,760 - HMPREF1058_RS05205 0.53 -2.2 216,826 - HMPREF1058_RS05205 0.60 -1.5 216,830 - HMPREF1058_RS05205 0.61 -2.9 216,859 + HMPREF1058_RS05205 0.64 -1.8 216,860 - HMPREF1058_RS05205 0.64 -0.9 216,889 + HMPREF1058_RS05205 0.67 +0.1 216,890 - HMPREF1058_RS05205 0.67 +0.1 216,892 - HMPREF1058_RS05205 0.67 +0.5 216,892 - HMPREF1058_RS05205 0.67 +1.6 216,940 - HMPREF1058_RS05205 0.73 +1.2 216,979 + HMPREF1058_RS05205 0.77 -1.5 216,980 - HMPREF1058_RS05205 0.77 -1.9 216,980 - HMPREF1058_RS05205 0.77 -0.2 216,980 - HMPREF1058_RS05205 0.77 +0.3 217,026 + HMPREF1058_RS05205 0.82 +0.2 217,191 + +0.1 217,230 - -0.5 217,230 - +0.8 217,235 - -0.1 217,280 + -1.9 217,281 - -0.2 217,282 + +1.0 217,332 + +1.2 217,358 + -0.1 217,579 + HMPREF1058_RS05200 0.41 +0.1 217,580 - HMPREF1058_RS05200 0.41 -1.9 217,629 - HMPREF1058_RS05200 0.52 -0.9 217,629 - HMPREF1058_RS05200 0.52 +0.7 217,662 + HMPREF1058_RS05200 0.59 +3.3 217,663 - HMPREF1058_RS05200 0.59 -1.9 217,663 - HMPREF1058_RS05200 0.59 +2.7 217,663 - HMPREF1058_RS05200 0.59 -1.5 217,670 + HMPREF1058_RS05200 0.60 +1.1 217,670 + HMPREF1058_RS05200 0.60 -0.3 217,671 - HMPREF1058_RS05200 0.61 +0.1 217,674 - HMPREF1058_RS05200 0.61 -1.3 217,710 + HMPREF1058_RS05200 0.69 +0.4 217,780 + HMPREF1058_RS05200 0.84 +0.1 217,835 + -1.9 217,848 - +0.8 217,874 + -1.9 217,877 - -1.5 217,881 + +0.7 217,882 - +1.6 218,063 - HMPREF1058_RS21005 0.38 +2.3 218,063 - HMPREF1058_RS21005 0.38 -1.9 218,088 + HMPREF1058_RS21005 0.47 -0.4 218,129 + -0.9 218,137 + HMPREF1058_RS21005 0.63 +0.7 218,138 - HMPREF1058_RS21005 0.64 -0.4 218,140 - HMPREF1058_RS21005 0.64 +0.4 218,171 + HMPREF1058_RS21005 0.75 -1.1
Or see this region's nucleotide sequence