Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04585 and HMPREF1058_RS04580 are separated by 260 nucleotides HMPREF1058_RS04580 and HMPREF1058_RS04575 are separated by 18 nucleotides HMPREF1058_RS04575 and HMPREF1058_RS04570 overlap by 4 nucleotides
HMPREF1058_RS04585: HMPREF1058_RS04585 - hypothetical protein, at 4,728 to 5,516
_RS04585
HMPREF1058_RS04580: HMPREF1058_RS04580 - hypothetical protein, at 5,777 to 6,175
_RS04580
HMPREF1058_RS04575: HMPREF1058_RS04575 - hypothetical protein, at 6,194 to 6,637
_RS04575
HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710
_RS04570
Position (kb) 6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.249 kb on + strand, within HMPREF1058_RS04585 at 5.413 kb on + strand, within HMPREF1058_RS04585 at 5.483 kb on + strand at 5.483 kb on + strand at 5.483 kb on + strand at 5.487 kb on + strand at 5.569 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.632 kb on + strand at 5.686 kb on + strand at 5.763 kb on + strand at 5.763 kb on + strand at 5.837 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 6.282 kb on + strand, within HMPREF1058_RS04575 at 6.375 kb on + strand, within HMPREF1058_RS04575 at 6.494 kb on + strand, within HMPREF1058_RS04575 at 6.572 kb on + strand, within HMPREF1058_RS04575 at 6.594 kb on + strand at 6.740 kb on + strand at 6.876 kb on + strand, within HMPREF1058_RS04570 at 7.148 kb on + strand, within HMPREF1058_RS04570 at 7.151 kb on + strand, within HMPREF1058_RS04570 at 7.155 kb on + strand, within HMPREF1058_RS04570 at 7.243 kb on + strand, within HMPREF1058_RS04570 at 7.364 kb on + strand, within HMPREF1058_RS04570 at 7.581 kb on + strand, within HMPREF1058_RS04570 at 7.586 kb on + strand, within HMPREF1058_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 remove 5,237 + HMPREF1058_RS04585 0.65 +1.6 5,237 + HMPREF1058_RS04585 0.65 -0.3 5,249 + HMPREF1058_RS04585 0.66 +2.0 5,413 + HMPREF1058_RS04585 0.87 +0.4 5,483 + -0.7 5,483 + -1.4 5,483 + +0.4 5,487 + +0.6 5,569 + +3.2 5,605 + -0.0 5,605 + -0.5 5,605 + -2.4 5,632 + -2.4 5,686 + -0.4 5,763 + +0.4 5,763 + +1.4 5,837 + HMPREF1058_RS04580 0.15 -0.0 5,908 + HMPREF1058_RS04580 0.33 -0.2 5,908 + HMPREF1058_RS04580 0.33 +2.4 5,926 + HMPREF1058_RS04580 0.37 +2.4 5,926 + HMPREF1058_RS04580 0.37 +0.4 6,282 + HMPREF1058_RS04575 0.20 -0.6 6,375 + HMPREF1058_RS04575 0.41 -0.5 6,494 + HMPREF1058_RS04575 0.68 -1.2 6,572 + HMPREF1058_RS04575 0.85 +0.4 6,594 + +3.6 6,740 + -2.6 6,876 + HMPREF1058_RS04570 0.22 -1.7 7,148 + HMPREF1058_RS04570 0.48 -0.0 7,151 + HMPREF1058_RS04570 0.48 -0.2 7,155 + HMPREF1058_RS04570 0.48 +1.4 7,243 + HMPREF1058_RS04570 0.57 -0.2 7,364 + HMPREF1058_RS04570 0.68 -1.6 7,581 + HMPREF1058_RS04570 0.88 -3.5 7,586 + HMPREF1058_RS04570 0.88 -0.6
Or see this region's nucleotide sequence