Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03955 and HMPREF1058_RS03950 are separated by 57 nucleotides HMPREF1058_RS03950 and HMPREF1058_RS03945 are separated by 100 nucleotides HMPREF1058_RS03945 and HMPREF1058_RS03940 are separated by 8 nucleotides
HMPREF1058_RS03955: HMPREF1058_RS03955 - AMP nucleosidase, at 151,935 to 152,711
_RS03955
HMPREF1058_RS03950: HMPREF1058_RS03950 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 152,769 to 153,218
_RS03950
HMPREF1058_RS03945: HMPREF1058_RS03945 - hypothetical protein, at 153,319 to 154,110
_RS03945
HMPREF1058_RS03940: HMPREF1058_RS03940 - Nif3-like dinuclear metal center hexameric protein, at 154,119 to 155,213
_RS03940
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 152.991 kb on - strand, within HMPREF1058_RS03950 at 153.051 kb on - strand, within HMPREF1058_RS03950 at 153.053 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.093 kb on - strand, within HMPREF1058_RS03950 at 153.205 kb on - strand at 153.216 kb on + strand at 153.222 kb on + strand at 153.223 kb on - strand at 153.301 kb on - strand at 153.301 kb on - strand at 153.316 kb on - strand at 153.317 kb on + strand at 153.318 kb on - strand at 153.320 kb on + strand at 153.321 kb on - strand at 154.215 kb on - strand at 154.215 kb on - strand at 154.232 kb on - strand, within HMPREF1058_RS03940 at 154.257 kb on - strand, within HMPREF1058_RS03940 at 154.286 kb on - strand, within HMPREF1058_RS03940 at 154.309 kb on - strand, within HMPREF1058_RS03940 at 154.404 kb on - strand, within HMPREF1058_RS03940 at 154.618 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.734 kb on - strand, within HMPREF1058_RS03940 at 154.738 kb on - strand, within HMPREF1058_RS03940 at 154.843 kb on - strand, within HMPREF1058_RS03940 at 154.849 kb on - strand, within HMPREF1058_RS03940 at 154.998 kb on - strand, within HMPREF1058_RS03940 at 155.011 kb on - strand, within HMPREF1058_RS03940 at 155.042 kb on - strand, within HMPREF1058_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 remove 152,991 - HMPREF1058_RS03950 0.49 +2.2 153,051 - HMPREF1058_RS03950 0.63 -0.6 153,053 - HMPREF1058_RS03950 0.63 +0.9 153,093 - HMPREF1058_RS03950 0.72 +0.2 153,093 - HMPREF1058_RS03950 0.72 +0.1 153,093 - HMPREF1058_RS03950 0.72 +1.5 153,205 - -0.2 153,216 + -1.3 153,222 + +2.4 153,223 - -0.6 153,301 - -2.4 153,301 - +0.5 153,316 - +1.2 153,317 + -0.2 153,318 - +1.4 153,320 + +0.4 153,321 - +1.5 154,215 - +0.7 154,215 - +0.9 154,232 - HMPREF1058_RS03940 0.10 +1.1 154,257 - HMPREF1058_RS03940 0.13 +4.3 154,286 - HMPREF1058_RS03940 0.15 +1.1 154,309 - HMPREF1058_RS03940 0.17 +2.4 154,404 - HMPREF1058_RS03940 0.26 -0.9 154,618 - HMPREF1058_RS03940 0.46 +1.1 154,730 - HMPREF1058_RS03940 0.56 +2.3 154,730 - HMPREF1058_RS03940 0.56 -0.6 154,730 - HMPREF1058_RS03940 0.56 +2.8 154,734 - HMPREF1058_RS03940 0.56 +3.2 154,738 - HMPREF1058_RS03940 0.57 -1.2 154,843 - HMPREF1058_RS03940 0.66 -0.6 154,849 - HMPREF1058_RS03940 0.67 -0.2 154,998 - HMPREF1058_RS03940 0.80 +0.4 155,011 - HMPREF1058_RS03940 0.81 +0.8 155,042 - HMPREF1058_RS03940 0.84 -1.0
Or see this region's nucleotide sequence