Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01115 and HMPREF1058_RS01110 are separated by 59 nucleotides HMPREF1058_RS01110 and HMPREF1058_RS01105 are separated by 285 nucleotides HMPREF1058_RS01105 and HMPREF1058_RS01100 are separated by 127 nucleotides
HMPREF1058_RS01115: HMPREF1058_RS01115 - hypothetical protein, at 207,357 to 207,761
_RS01115
HMPREF1058_RS01110: HMPREF1058_RS01110 - IS256 family transposase, at 207,821 to 209,035
_RS01110
HMPREF1058_RS01105: HMPREF1058_RS01105 - hypothetical protein, at 209,321 to 209,773
_RS01105
HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764
_RS01100
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 206.828 kb on + strand at 206.894 kb on + strand at 206.995 kb on + strand at 207.018 kb on - strand at 207.061 kb on - strand at 207.061 kb on - strand at 207.074 kb on - strand at 207.139 kb on - strand at 207.141 kb on - strand at 207.253 kb on + strand at 207.289 kb on + strand at 207.312 kb on - strand at 207.376 kb on + strand at 207.380 kb on + strand at 207.395 kb on - strand at 207.395 kb on - strand at 207.460 kb on - strand, within HMPREF1058_RS01115 at 207.463 kb on - strand, within HMPREF1058_RS01115 at 207.466 kb on + strand, within HMPREF1058_RS01115 at 207.466 kb on + strand, within HMPREF1058_RS01115 at 207.467 kb on - strand, within HMPREF1058_RS01115 at 207.474 kb on + strand, within HMPREF1058_RS01115 at 207.516 kb on + strand, within HMPREF1058_RS01115 at 207.516 kb on + strand, within HMPREF1058_RS01115 at 207.516 kb on + strand, within HMPREF1058_RS01115 at 207.563 kb on - strand, within HMPREF1058_RS01115 at 207.563 kb on - strand, within HMPREF1058_RS01115 at 207.639 kb on + strand, within HMPREF1058_RS01115 at 207.639 kb on + strand, within HMPREF1058_RS01115 at 207.661 kb on - strand, within HMPREF1058_RS01115 at 207.931 kb on + strand at 208.169 kb on - strand, within HMPREF1058_RS01110 at 208.232 kb on - strand, within HMPREF1058_RS01110 at 208.257 kb on + strand, within HMPREF1058_RS01110 at 208.335 kb on - strand, within HMPREF1058_RS01110 at 208.336 kb on + strand, within HMPREF1058_RS01110 at 208.380 kb on - strand, within HMPREF1058_RS01110 at 208.380 kb on - strand, within HMPREF1058_RS01110 at 208.411 kb on + strand, within HMPREF1058_RS01110 at 208.412 kb on - strand, within HMPREF1058_RS01110 at 208.431 kb on - strand, within HMPREF1058_RS01110 at 208.431 kb on - strand, within HMPREF1058_RS01110 at 208.431 kb on - strand, within HMPREF1058_RS01110 at 208.433 kb on - strand, within HMPREF1058_RS01110 at 208.434 kb on + strand, within HMPREF1058_RS01110 at 208.435 kb on - strand, within HMPREF1058_RS01110 at 208.505 kb on - strand, within HMPREF1058_RS01110 at 208.510 kb on + strand, within HMPREF1058_RS01110 at 208.519 kb on + strand, within HMPREF1058_RS01110 at 208.519 kb on + strand, within HMPREF1058_RS01110 at 208.519 kb on + strand, within HMPREF1058_RS01110 at 208.520 kb on - strand, within HMPREF1058_RS01110 at 208.520 kb on - strand, within HMPREF1058_RS01110 at 208.594 kb on - strand, within HMPREF1058_RS01110 at 208.619 kb on + strand, within HMPREF1058_RS01110 at 208.620 kb on - strand, within HMPREF1058_RS01110 at 208.799 kb on + strand, within HMPREF1058_RS01110 at 208.823 kb on - strand, within HMPREF1058_RS01110 at 208.823 kb on - strand, within HMPREF1058_RS01110 at 208.823 kb on - strand, within HMPREF1058_RS01110 at 208.824 kb on + strand, within HMPREF1058_RS01110 at 208.825 kb on - strand, within HMPREF1058_RS01110 at 208.825 kb on - strand, within HMPREF1058_RS01110 at 208.825 kb on - strand, within HMPREF1058_RS01110 at 208.903 kb on + strand, within HMPREF1058_RS01110 at 208.903 kb on + strand, within HMPREF1058_RS01110 at 208.925 kb on + strand at 208.943 kb on - strand at 209.033 kb on + strand at 209.159 kb on + strand at 209.181 kb on - strand at 209.253 kb on - strand at 209.264 kb on + strand at 209.315 kb on - strand at 209.315 kb on - strand at 209.315 kb on - strand at 209.341 kb on - strand at 209.359 kb on - strand at 209.372 kb on - strand, within HMPREF1058_RS01105 at 209.423 kb on - strand, within HMPREF1058_RS01105 at 209.434 kb on + strand, within HMPREF1058_RS01105 at 209.453 kb on - strand, within HMPREF1058_RS01105 at 209.463 kb on + strand, within HMPREF1058_RS01105 at 209.464 kb on - strand, within HMPREF1058_RS01105 at 209.487 kb on + strand, within HMPREF1058_RS01105 at 209.546 kb on + strand, within HMPREF1058_RS01105 at 209.561 kb on - strand, within HMPREF1058_RS01105 at 209.562 kb on + strand, within HMPREF1058_RS01105 at 209.563 kb on - strand, within HMPREF1058_RS01105 at 209.642 kb on + strand, within HMPREF1058_RS01105 at 209.642 kb on + strand, within HMPREF1058_RS01105 at 209.643 kb on - strand, within HMPREF1058_RS01105 at 209.644 kb on + strand, within HMPREF1058_RS01105 at 209.644 kb on + strand, within HMPREF1058_RS01105 at 209.645 kb on - strand, within HMPREF1058_RS01105 at 209.651 kb on + strand, within HMPREF1058_RS01105 at 209.652 kb on - strand, within HMPREF1058_RS01105 at 209.655 kb on - strand, within HMPREF1058_RS01105 at 209.655 kb on - strand, within HMPREF1058_RS01105 at 209.683 kb on + strand, within HMPREF1058_RS01105 at 209.685 kb on + strand, within HMPREF1058_RS01105 at 209.685 kb on + strand, within HMPREF1058_RS01105 at 209.685 kb on + strand, within HMPREF1058_RS01105 at 209.792 kb on - strand at 209.808 kb on + strand at 209.808 kb on + strand at 209.815 kb on - strand at 209.929 kb on + strand at 210.010 kb on - strand, within HMPREF1058_RS01100 at 210.011 kb on + strand, within HMPREF1058_RS01100 at 210.012 kb on - strand, within HMPREF1058_RS01100 at 210.012 kb on - strand, within HMPREF1058_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 remove 206,828 + +1.5 206,894 + -4.5 206,995 + +0.5 207,018 - +0.3 207,061 - +2.4 207,061 - -1.0 207,074 - -0.2 207,139 - +0.3 207,141 - +0.5 207,253 + -1.3 207,289 + -1.7 207,312 - -0.6 207,376 + -0.2 207,380 + -0.2 207,395 - -1.3 207,395 - +1.3 207,460 - HMPREF1058_RS01115 0.25 -1.7 207,463 - HMPREF1058_RS01115 0.26 -1.3 207,466 + HMPREF1058_RS01115 0.27 -3.2 207,466 + HMPREF1058_RS01115 0.27 -0.4 207,467 - HMPREF1058_RS01115 0.27 -0.6 207,474 + HMPREF1058_RS01115 0.29 -0.1 207,516 + HMPREF1058_RS01115 0.39 +0.8 207,516 + HMPREF1058_RS01115 0.39 +1.7 207,516 + HMPREF1058_RS01115 0.39 +0.8 207,563 - HMPREF1058_RS01115 0.51 -1.3 207,563 - HMPREF1058_RS01115 0.51 -2.1 207,639 + HMPREF1058_RS01115 0.70 +2.8 207,639 + HMPREF1058_RS01115 0.70 +4.3 207,661 - HMPREF1058_RS01115 0.75 -0.3 207,931 + +1.5 208,169 - HMPREF1058_RS01110 0.29 +0.5 208,232 - HMPREF1058_RS01110 0.34 -0.1 208,257 + HMPREF1058_RS01110 0.36 -0.0 208,335 - HMPREF1058_RS01110 0.42 +0.3 208,336 + HMPREF1058_RS01110 0.42 +0.9 208,380 - HMPREF1058_RS01110 0.46 +0.3 208,380 - HMPREF1058_RS01110 0.46 -2.7 208,411 + HMPREF1058_RS01110 0.49 +0.5 208,412 - HMPREF1058_RS01110 0.49 -2.3 208,431 - HMPREF1058_RS01110 0.50 +0.5 208,431 - HMPREF1058_RS01110 0.50 +1.3 208,431 - HMPREF1058_RS01110 0.50 +0.8 208,433 - HMPREF1058_RS01110 0.50 +1.3 208,434 + HMPREF1058_RS01110 0.50 +0.8 208,435 - HMPREF1058_RS01110 0.51 -1.1 208,505 - HMPREF1058_RS01110 0.56 -1.7 208,510 + HMPREF1058_RS01110 0.57 -1.7 208,519 + HMPREF1058_RS01110 0.57 +0.3 208,519 + HMPREF1058_RS01110 0.57 +1.5 208,519 + HMPREF1058_RS01110 0.57 +1.9 208,520 - HMPREF1058_RS01110 0.58 -0.5 208,520 - HMPREF1058_RS01110 0.58 -2.5 208,594 - HMPREF1058_RS01110 0.64 -2.3 208,619 + HMPREF1058_RS01110 0.66 +0.8 208,620 - HMPREF1058_RS01110 0.66 +0.3 208,799 + HMPREF1058_RS01110 0.80 -1.0 208,823 - HMPREF1058_RS01110 0.82 -0.2 208,823 - HMPREF1058_RS01110 0.82 +3.6 208,823 - HMPREF1058_RS01110 0.82 -2.1 208,824 + HMPREF1058_RS01110 0.83 +4.3 208,825 - HMPREF1058_RS01110 0.83 +0.3 208,825 - HMPREF1058_RS01110 0.83 +1.7 208,825 - HMPREF1058_RS01110 0.83 +1.1 208,903 + HMPREF1058_RS01110 0.89 -0.4 208,903 + HMPREF1058_RS01110 0.89 +2.6 208,925 + -2.9 208,943 - -3.5 209,033 + +1.5 209,159 + +1.6 209,181 - -3.6 209,253 - -2.3 209,264 + -0.0 209,315 - +0.4 209,315 - -1.7 209,315 - -0.5 209,341 - +1.2 209,359 - +0.8 209,372 - HMPREF1058_RS01105 0.11 -1.7 209,423 - HMPREF1058_RS01105 0.23 +1.1 209,434 + HMPREF1058_RS01105 0.25 -1.1 209,453 - HMPREF1058_RS01105 0.29 +1.6 209,463 + HMPREF1058_RS01105 0.31 -0.9 209,464 - HMPREF1058_RS01105 0.32 -2.1 209,487 + HMPREF1058_RS01105 0.37 -1.3 209,546 + HMPREF1058_RS01105 0.50 -2.9 209,561 - HMPREF1058_RS01105 0.53 +2.1 209,562 + HMPREF1058_RS01105 0.53 +0.8 209,563 - HMPREF1058_RS01105 0.53 +0.3 209,642 + HMPREF1058_RS01105 0.71 -0.7 209,642 + HMPREF1058_RS01105 0.71 -1.0 209,643 - HMPREF1058_RS01105 0.71 -0.6 209,644 + HMPREF1058_RS01105 0.71 -1.7 209,644 + HMPREF1058_RS01105 0.71 -1.5 209,645 - HMPREF1058_RS01105 0.72 +0.1 209,651 + HMPREF1058_RS01105 0.73 -2.9 209,652 - HMPREF1058_RS01105 0.73 -0.9 209,655 - HMPREF1058_RS01105 0.74 +0.1 209,655 - HMPREF1058_RS01105 0.74 +1.5 209,683 + HMPREF1058_RS01105 0.80 -0.7 209,685 + HMPREF1058_RS01105 0.80 +0.1 209,685 + HMPREF1058_RS01105 0.80 -1.4 209,685 + HMPREF1058_RS01105 0.80 -0.7 209,792 - -0.7 209,808 + -2.1 209,808 + -2.3 209,815 - -2.3 209,929 + -1.1 210,010 - HMPREF1058_RS01100 0.13 +0.3 210,011 + HMPREF1058_RS01100 0.13 -0.5 210,012 - HMPREF1058_RS01100 0.13 +1.4 210,012 - HMPREF1058_RS01100 0.13 -1.7
Or see this region's nucleotide sequence