Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides HMPREF1058_RS16495 and HMPREF1058_RS16490 are separated by 1 nucleotides HMPREF1058_RS16490 and HMPREF1058_RS16485 are separated by 174 nucleotides HMPREF1058_RS16485 and HMPREF1058_RS16480 are separated by 95 nucleotides
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
HMPREF1058_RS16490: HMPREF1058_RS16490 - sodium ion-translocating decarboxylase subunit beta, at 657,511 to 658,671
_RS16490
HMPREF1058_RS16485: HMPREF1058_RS16485 - cyclomaltodextrinase C-terminal domain-containing protein, at 658,846 to 659,094
_RS16485
HMPREF1058_RS16480: HMPREF1058_RS16480 - SDR family oxidoreductase, at 659,190 to 659,948
_RS16480
Position (kb) 657
658
659 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand at 657.113 kb on - strand at 657.134 kb on + strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.347 kb on - strand, within HMPREF1058_RS16495 at 657.457 kb on + strand, within HMPREF1058_RS16495 at 657.461 kb on + strand, within HMPREF1058_RS16495 at 657.508 kb on - strand at 657.546 kb on - strand at 657.546 kb on - strand at 657.562 kb on + strand at 657.562 kb on + strand at 657.563 kb on - strand at 657.564 kb on + strand at 657.565 kb on - strand at 657.595 kb on - strand at 657.600 kb on - strand at 657.612 kb on - strand at 657.618 kb on - strand at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.629 kb on - strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.767 kb on + strand, within HMPREF1058_RS16490 at 657.770 kb on - strand, within HMPREF1058_RS16490 at 657.781 kb on - strand, within HMPREF1058_RS16490 at 657.804 kb on + strand, within HMPREF1058_RS16490 at 657.812 kb on + strand, within HMPREF1058_RS16490 at 657.908 kb on - strand, within HMPREF1058_RS16490 at 658.011 kb on - strand, within HMPREF1058_RS16490 at 658.048 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.086 kb on + strand, within HMPREF1058_RS16490 at 658.086 kb on + strand, within HMPREF1058_RS16490 at 658.166 kb on + strand, within HMPREF1058_RS16490 at 658.194 kb on + strand, within HMPREF1058_RS16490 at 658.195 kb on - strand, within HMPREF1058_RS16490 at 658.249 kb on - strand, within HMPREF1058_RS16490 at 658.329 kb on - strand, within HMPREF1058_RS16490 at 658.332 kb on - strand at 658.518 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.583 kb on - strand at 658.669 kb on + strand at 658.707 kb on + strand at 658.758 kb on + strand at 658.778 kb on + strand at 658.779 kb on - strand at 658.786 kb on + strand at 658.808 kb on - strand at 658.832 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.868 kb on - strand at 658.889 kb on + strand, within HMPREF1058_RS16485 at 658.890 kb on - strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.893 kb on + strand, within HMPREF1058_RS16485 at 658.893 kb on + strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.897 kb on + strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.908 kb on + strand, within HMPREF1058_RS16485 at 659.019 kb on + strand, within HMPREF1058_RS16485 at 659.110 kb on - strand at 659.117 kb on + strand at 659.117 kb on + strand at 659.118 kb on - strand at 659.167 kb on - strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.171 kb on - strand at 659.330 kb on + strand, within HMPREF1058_RS16480 at 659.330 kb on + strand, within HMPREF1058_RS16480 at 659.332 kb on + strand, within HMPREF1058_RS16480 at 659.333 kb on - strand, within HMPREF1058_RS16480 at 659.334 kb on + strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.408 kb on + strand, within HMPREF1058_RS16480 at 659.528 kb on + strand, within HMPREF1058_RS16480 at 659.540 kb on + strand, within HMPREF1058_RS16480 at 659.541 kb on - strand, within HMPREF1058_RS16480 at 659.543 kb on + strand, within HMPREF1058_RS16480 at 659.544 kb on - strand, within HMPREF1058_RS16480 at 659.544 kb on - strand, within HMPREF1058_RS16480 at 659.546 kb on + strand, within HMPREF1058_RS16480 at 659.546 kb on + strand, within HMPREF1058_RS16480 at 659.547 kb on - strand, within HMPREF1058_RS16480 at 659.558 kb on + strand, within HMPREF1058_RS16480 at 659.558 kb on + strand, within HMPREF1058_RS16480 at 659.616 kb on - strand, within HMPREF1058_RS16480 at 659.622 kb on + strand, within HMPREF1058_RS16480 at 659.623 kb on - strand, within HMPREF1058_RS16480 at 659.623 kb on - strand, within HMPREF1058_RS16480
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 remove 656,641 + HMPREF1058_RS16500 0.55 -0.9 656,641 + HMPREF1058_RS16500 0.55 +0.1 656,642 - HMPREF1058_RS16500 0.56 -4.5 656,754 - HMPREF1058_RS16500 0.68 -0.9 656,840 + HMPREF1058_RS16500 0.77 -3.5 656,948 + HMPREF1058_RS16500 0.88 -1.5 656,995 - -0.9 656,999 - -1.9 656,999 - -2.5 657,052 + -0.7 657,113 - -0.9 657,134 + HMPREF1058_RS16495 0.13 -1.9 657,137 - HMPREF1058_RS16495 0.14 -2.2 657,137 - HMPREF1058_RS16495 0.14 -0.9 657,263 + HMPREF1058_RS16495 0.43 -3.5 657,263 + HMPREF1058_RS16495 0.43 -3.1 657,347 - HMPREF1058_RS16495 0.62 +0.1 657,457 + HMPREF1058_RS16495 0.88 -1.9 657,461 + HMPREF1058_RS16495 0.89 -1.5 657,508 - -3.6 657,546 - +0.1 657,546 - -2.9 657,562 + -5.2 657,562 + -1.9 657,563 - -2.7 657,564 + -4.2 657,565 - -4.2 657,595 - -3.1 657,600 - -3.6 657,612 - -4.3 657,618 - -2.9 657,627 - HMPREF1058_RS16490 0.10 -2.5 657,627 - HMPREF1058_RS16490 0.10 -3.6 657,628 + HMPREF1058_RS16490 0.10 -4.7 657,628 + HMPREF1058_RS16490 0.10 -1.5 657,629 - HMPREF1058_RS16490 0.10 -2.5 657,699 + HMPREF1058_RS16490 0.16 -3.4 657,699 + HMPREF1058_RS16490 0.16 -3.2 657,740 - HMPREF1058_RS16490 0.20 -3.5 657,740 - HMPREF1058_RS16490 0.20 -4.1 657,740 - HMPREF1058_RS16490 0.20 -3.1 657,740 - HMPREF1058_RS16490 0.20 -1.9 657,767 + HMPREF1058_RS16490 0.22 -3.5 657,770 - HMPREF1058_RS16490 0.22 -3.1 657,781 - HMPREF1058_RS16490 0.23 -1.5 657,804 + HMPREF1058_RS16490 0.25 -1.5 657,812 + HMPREF1058_RS16490 0.26 -4.2 657,908 - HMPREF1058_RS16490 0.34 -3.4 658,011 - HMPREF1058_RS16490 0.43 -1.5 658,048 + HMPREF1058_RS16490 0.46 -0.9 658,054 + HMPREF1058_RS16490 0.47 -1.9 658,054 + +0.1 658,055 - HMPREF1058_RS16490 0.47 -2.9 658,055 - HMPREF1058_RS16490 0.47 -1.5 658,055 - HMPREF1058_RS16490 0.47 -1.5 658,055 - HMPREF1058_RS16490 0.47 -3.1 658,055 - HMPREF1058_RS16490 0.47 -1.5 658,055 - HMPREF1058_RS16490 0.47 -4.2 658,086 + HMPREF1058_RS16490 0.50 -3.5 658,086 + HMPREF1058_RS16490 0.50 -2.6 658,166 + HMPREF1058_RS16490 0.56 -4.0 658,194 + HMPREF1058_RS16490 0.59 -1.5 658,195 - HMPREF1058_RS16490 0.59 -0.9 658,249 - HMPREF1058_RS16490 0.64 -4.7 658,329 - HMPREF1058_RS16490 0.70 -1.5 658,332 - -0.9 658,518 - HMPREF1058_RS16490 0.87 -1.5 658,543 - HMPREF1058_RS16490 0.89 -4.6 658,543 - HMPREF1058_RS16490 0.89 -1.9 658,543 - HMPREF1058_RS16490 0.89 -1.9 658,583 - -3.4 658,669 + +0.6 658,707 + -1.1 658,758 + +2.2 658,778 + -0.2 658,779 - +1.9 658,786 + +2.0 658,808 - +1.0 658,832 + +3.6 658,863 + +0.3 658,863 + -0.2 658,863 + +1.5 658,863 + +1.9 658,863 + +1.7 658,868 - +1.7 658,889 + HMPREF1058_RS16485 0.17 +1.1 658,890 - HMPREF1058_RS16485 0.18 +1.6 658,891 + HMPREF1058_RS16485 0.18 +1.1 658,891 + HMPREF1058_RS16485 0.18 +2.7 658,891 + HMPREF1058_RS16485 0.18 +1.4 658,892 - HMPREF1058_RS16485 0.18 +2.0 658,892 - HMPREF1058_RS16485 0.18 +1.7 658,892 - HMPREF1058_RS16485 0.18 -2.9 658,892 - HMPREF1058_RS16485 0.18 +1.5 658,893 + HMPREF1058_RS16485 0.19 +1.2 658,893 + HMPREF1058_RS16485 0.19 +1.0 658,894 - HMPREF1058_RS16485 0.19 +1.0 658,894 - HMPREF1058_RS16485 0.19 +1.1 658,894 - HMPREF1058_RS16485 0.19 +2.8 658,894 - HMPREF1058_RS16485 0.19 -1.9 658,894 - HMPREF1058_RS16485 0.19 +2.2 658,897 + HMPREF1058_RS16485 0.20 +2.0 658,898 - HMPREF1058_RS16485 0.21 +2.0 658,898 - HMPREF1058_RS16485 0.21 +1.1 658,898 - HMPREF1058_RS16485 0.21 +0.7 658,898 - HMPREF1058_RS16485 0.21 +3.8 658,908 + HMPREF1058_RS16485 0.25 -0.5 659,019 + HMPREF1058_RS16485 0.69 +2.4 659,110 - +1.7 659,117 + +0.3 659,117 + +0.5 659,118 - +2.4 659,167 - +0.5 659,170 + -0.7 659,170 + -0.9 659,170 + +2.9 659,170 + +0.3 659,171 - -0.5 659,330 + HMPREF1058_RS16480 0.18 -0.2 659,330 + HMPREF1058_RS16480 0.18 +0.2 659,332 + HMPREF1058_RS16480 0.19 +0.2 659,333 - HMPREF1058_RS16480 0.19 +1.0 659,334 + HMPREF1058_RS16480 0.19 +2.7 659,335 - HMPREF1058_RS16480 0.19 +0.9 659,335 - HMPREF1058_RS16480 0.19 +1.6 659,335 - HMPREF1058_RS16480 0.19 -1.7 659,335 - HMPREF1058_RS16480 0.19 -1.5 659,408 + HMPREF1058_RS16480 0.29 -0.5 659,528 + HMPREF1058_RS16480 0.45 +1.3 659,540 + HMPREF1058_RS16480 0.46 +0.2 659,541 - HMPREF1058_RS16480 0.46 +0.3 659,543 + HMPREF1058_RS16480 0.47 +0.9 659,544 - HMPREF1058_RS16480 0.47 +1.8 659,544 - HMPREF1058_RS16480 0.47 +1.3 659,546 + HMPREF1058_RS16480 0.47 -1.3 659,546 + HMPREF1058_RS16480 0.47 +2.0 659,547 - HMPREF1058_RS16480 0.47 +0.7 659,558 + HMPREF1058_RS16480 0.48 -0.4 659,558 + HMPREF1058_RS16480 0.48 +0.5 659,616 - HMPREF1058_RS16480 0.56 +2.7 659,622 + HMPREF1058_RS16480 0.57 +1.0 659,623 - HMPREF1058_RS16480 0.57 +0.9 659,623 - HMPREF1058_RS16480 0.57 +1.0
Or see this region's nucleotide sequence