Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10940 and HMPREF1058_RS10935 are separated by 288 nucleotides HMPREF1058_RS10935 and HMPREF1058_RS10930 are separated by 15 nucleotides
HMPREF1058_RS10940: HMPREF1058_RS10940 - U32 family peptidase, at 520,594 to 521,856
_RS10940
HMPREF1058_RS10935: HMPREF1058_RS10935 - RagB/SusD family nutrient uptake outer membrane protein, at 522,145 to 523,695
_RS10935
HMPREF1058_RS10930: HMPREF1058_RS10930 - TonB-dependent receptor, at 523,711 to 526,797
_RS10930
Position (kb) 522
523
524 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.230 kb on + strand, within HMPREF1058_RS10940 at 521.277 kb on + strand, within HMPREF1058_RS10940 at 521.281 kb on + strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.334 kb on - strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.391 kb on - strand, within HMPREF1058_RS10940 at 521.410 kb on + strand, within HMPREF1058_RS10940 at 521.431 kb on + strand, within HMPREF1058_RS10940 at 521.550 kb on + strand, within HMPREF1058_RS10940 at 521.551 kb on - strand, within HMPREF1058_RS10940 at 521.551 kb on - strand, within HMPREF1058_RS10940 at 521.557 kb on + strand, within HMPREF1058_RS10940 at 521.557 kb on + strand, within HMPREF1058_RS10940 at 521.581 kb on - strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.588 kb on - strand, within HMPREF1058_RS10940 at 521.588 kb on - strand, within HMPREF1058_RS10940 at 521.691 kb on + strand, within HMPREF1058_RS10940 at 521.692 kb on - strand, within HMPREF1058_RS10940 at 521.774 kb on + strand at 521.799 kb on - strand at 521.806 kb on - strand at 521.819 kb on - strand at 521.820 kb on + strand at 521.884 kb on + strand at 521.895 kb on - strand at 521.910 kb on - strand at 521.910 kb on - strand at 521.947 kb on - strand at 521.961 kb on + strand at 521.971 kb on + strand at 521.988 kb on - strand at 521.999 kb on - strand at 522.001 kb on - strand at 522.088 kb on + strand at 522.168 kb on + strand at 522.227 kb on - strand at 522.335 kb on + strand, within HMPREF1058_RS10935 at 522.336 kb on - strand, within HMPREF1058_RS10935 at 522.453 kb on + strand, within HMPREF1058_RS10935 at 522.657 kb on + strand, within HMPREF1058_RS10935 at 522.667 kb on + strand, within HMPREF1058_RS10935 at 522.668 kb on - strand, within HMPREF1058_RS10935 at 522.668 kb on - strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.770 kb on - strand, within HMPREF1058_RS10935 at 522.780 kb on + strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.782 kb on + strand, within HMPREF1058_RS10935 at 522.783 kb on - strand, within HMPREF1058_RS10935 at 522.785 kb on + strand, within HMPREF1058_RS10935 at 522.808 kb on - strand, within HMPREF1058_RS10935 at 522.811 kb on + strand, within HMPREF1058_RS10935 at 522.811 kb on + strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935 at 522.930 kb on - strand, within HMPREF1058_RS10935 at 522.939 kb on + strand, within HMPREF1058_RS10935 at 522.959 kb on + strand, within HMPREF1058_RS10935 at 523.015 kb on + strand, within HMPREF1058_RS10935 at 523.016 kb on - strand, within HMPREF1058_RS10935 at 523.016 kb on - strand, within HMPREF1058_RS10935 at 523.029 kb on + strand, within HMPREF1058_RS10935 at 523.058 kb on + strand, within HMPREF1058_RS10935 at 523.071 kb on + strand, within HMPREF1058_RS10935 at 523.078 kb on + strand, within HMPREF1058_RS10935 at 523.090 kb on + strand, within HMPREF1058_RS10935 at 523.113 kb on - strand, within HMPREF1058_RS10935 at 523.114 kb on + strand, within HMPREF1058_RS10935 at 523.115 kb on - strand at 523.177 kb on - strand, within HMPREF1058_RS10935 at 523.323 kb on + strand, within HMPREF1058_RS10935 at 523.333 kb on + strand, within HMPREF1058_RS10935 at 523.334 kb on - strand, within HMPREF1058_RS10935 at 523.367 kb on - strand, within HMPREF1058_RS10935 at 523.367 kb on - strand, within HMPREF1058_RS10935 at 523.423 kb on - strand at 523.423 kb on - strand, within HMPREF1058_RS10935 at 523.423 kb on - strand, within HMPREF1058_RS10935 at 523.439 kb on + strand, within HMPREF1058_RS10935 at 523.554 kb on + strand at 523.555 kb on - strand at 523.555 kb on - strand at 523.558 kb on + strand at 523.604 kb on - strand at 523.607 kb on + strand at 523.607 kb on + strand at 523.608 kb on - strand at 523.608 kb on - strand at 523.608 kb on - strand at 523.672 kb on + strand at 523.672 kb on + strand at 523.682 kb on - strand at 523.740 kb on + strand at 523.741 kb on - strand at 523.766 kb on + strand at 523.766 kb on + strand at 523.771 kb on - strand at 523.816 kb on + strand at 523.828 kb on - strand at 523.873 kb on - strand at 523.908 kb on + strand at 523.908 kb on + strand at 523.908 kb on + strand at 523.924 kb on + strand at 523.925 kb on - strand at 523.929 kb on - strand at 523.986 kb on + strand at 524.041 kb on - strand, within HMPREF1058_RS10930 at 524.044 kb on + strand, within HMPREF1058_RS10930 at 524.045 kb on - strand, within HMPREF1058_RS10930 at 524.064 kb on + strand, within HMPREF1058_RS10930 at 524.064 kb on + strand, within HMPREF1058_RS10930 at 524.140 kb on + strand, within HMPREF1058_RS10930 at 524.145 kb on + strand, within HMPREF1058_RS10930 at 524.212 kb on + strand, within HMPREF1058_RS10930 at 524.289 kb on + strand, within HMPREF1058_RS10930 at 524.344 kb on + strand, within HMPREF1058_RS10930 at 524.345 kb on - strand, within HMPREF1058_RS10930 at 524.419 kb on - strand, within HMPREF1058_RS10930 at 524.421 kb on - strand, within HMPREF1058_RS10930 at 524.424 kb on + strand, within HMPREF1058_RS10930 at 524.424 kb on + strand, within HMPREF1058_RS10930 at 524.425 kb on - strand, within HMPREF1058_RS10930 at 524.427 kb on + strand, within HMPREF1058_RS10930 at 524.428 kb on - strand, within HMPREF1058_RS10930 at 524.532 kb on + strand, within HMPREF1058_RS10930 at 524.557 kb on + strand, within HMPREF1058_RS10930 at 524.565 kb on + strand, within HMPREF1058_RS10930 at 524.566 kb on - strand, within HMPREF1058_RS10930 at 524.575 kb on + strand, within HMPREF1058_RS10930 at 524.656 kb on - strand, within HMPREF1058_RS10930 at 524.659 kb on - strand, within HMPREF1058_RS10930 at 524.680 kb on + strand, within HMPREF1058_RS10930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 remove 521,208 + HMPREF1058_RS10940 0.49 -0.5 521,208 + HMPREF1058_RS10940 0.49 -3.1 521,216 + HMPREF1058_RS10940 0.49 -3.1 521,216 + HMPREF1058_RS10940 0.49 -4.2 521,216 + HMPREF1058_RS10940 0.49 -1.7 521,230 + HMPREF1058_RS10940 0.50 -2.2 521,277 + HMPREF1058_RS10940 0.54 -2.9 521,281 + HMPREF1058_RS10940 0.54 -1.3 521,282 - HMPREF1058_RS10940 0.54 -4.5 521,282 - HMPREF1058_RS10940 0.54 -3.0 521,282 - HMPREF1058_RS10940 0.54 -1.7 521,282 - HMPREF1058_RS10940 0.54 -2.7 521,282 - HMPREF1058_RS10940 0.54 +0.9 521,310 + HMPREF1058_RS10940 0.57 -2.5 521,310 + HMPREF1058_RS10940 0.57 -3.2 521,334 - HMPREF1058_RS10940 0.59 -3.5 521,390 + HMPREF1058_RS10940 0.63 -3.7 521,390 + HMPREF1058_RS10940 0.63 -2.7 521,391 - HMPREF1058_RS10940 0.63 +0.9 521,410 + HMPREF1058_RS10940 0.65 -5.7 521,431 + HMPREF1058_RS10940 0.66 -2.4 521,550 + HMPREF1058_RS10940 0.76 -2.1 521,551 - HMPREF1058_RS10940 0.76 -3.3 521,551 - HMPREF1058_RS10940 0.76 -4.9 521,557 + HMPREF1058_RS10940 0.76 -4.9 521,557 + HMPREF1058_RS10940 0.76 -1.7 521,581 - HMPREF1058_RS10940 0.78 -1.1 521,587 + HMPREF1058_RS10940 0.79 -3.3 521,587 + HMPREF1058_RS10940 0.79 -2.9 521,587 + HMPREF1058_RS10940 0.79 -3.5 521,588 - HMPREF1058_RS10940 0.79 -1.7 521,588 - HMPREF1058_RS10940 0.79 -1.5 521,691 + HMPREF1058_RS10940 0.87 -4.6 521,692 - HMPREF1058_RS10940 0.87 -3.1 521,774 + -2.7 521,799 - -1.1 521,806 - -1.6 521,819 - -2.1 521,820 + -0.1 521,884 + +0.4 521,895 - +1.4 521,910 - +1.8 521,910 - +1.0 521,947 - -0.1 521,961 + +0.7 521,971 + +1.6 521,988 - +0.4 521,999 - +0.9 522,001 - +1.1 522,088 + -1.4 522,168 + +0.2 522,227 - +2.2 522,335 + HMPREF1058_RS10935 0.12 +1.2 522,336 - HMPREF1058_RS10935 0.12 -0.5 522,453 + HMPREF1058_RS10935 0.20 +0.4 522,657 + HMPREF1058_RS10935 0.33 +0.1 522,667 + HMPREF1058_RS10935 0.34 +1.7 522,668 - HMPREF1058_RS10935 0.34 +2.2 522,668 - HMPREF1058_RS10935 0.34 +0.7 522,671 + HMPREF1058_RS10935 0.34 -0.2 522,671 + HMPREF1058_RS10935 0.34 +0.7 522,671 + HMPREF1058_RS10935 0.34 +0.7 522,672 - HMPREF1058_RS10935 0.34 +0.3 522,672 - HMPREF1058_RS10935 0.34 -1.1 522,672 - HMPREF1058_RS10935 0.34 +0.1 522,672 - HMPREF1058_RS10935 0.34 +0.1 522,770 - HMPREF1058_RS10935 0.40 +0.9 522,780 + HMPREF1058_RS10935 0.41 -1.7 522,781 - HMPREF1058_RS10935 0.41 +1.6 522,781 - HMPREF1058_RS10935 0.41 -0.3 522,781 - HMPREF1058_RS10935 0.41 -0.0 522,782 + HMPREF1058_RS10935 0.41 +0.8 522,783 - HMPREF1058_RS10935 0.41 +0.9 522,785 + HMPREF1058_RS10935 0.41 +1.1 522,808 - HMPREF1058_RS10935 0.43 +1.0 522,811 + HMPREF1058_RS10935 0.43 +1.6 522,811 + HMPREF1058_RS10935 0.43 +1.1 522,812 - HMPREF1058_RS10935 0.43 +1.3 522,812 - HMPREF1058_RS10935 0.43 +0.9 522,812 - HMPREF1058_RS10935 0.43 +0.4 522,930 - HMPREF1058_RS10935 0.51 +2.5 522,939 + HMPREF1058_RS10935 0.51 +2.4 522,959 + HMPREF1058_RS10935 0.52 -1.7 523,015 + HMPREF1058_RS10935 0.56 +0.1 523,016 - HMPREF1058_RS10935 0.56 +0.1 523,016 - HMPREF1058_RS10935 0.56 -1.1 523,029 + HMPREF1058_RS10935 0.57 -0.1 523,058 + HMPREF1058_RS10935 0.59 +0.2 523,071 + HMPREF1058_RS10935 0.60 +1.0 523,078 + HMPREF1058_RS10935 0.60 -0.7 523,090 + HMPREF1058_RS10935 0.61 -1.1 523,113 - HMPREF1058_RS10935 0.62 -0.5 523,114 + HMPREF1058_RS10935 0.62 -0.8 523,115 - -1.1 523,177 - HMPREF1058_RS10935 0.67 -2.1 523,323 + HMPREF1058_RS10935 0.76 -1.7 523,333 + HMPREF1058_RS10935 0.77 -0.1 523,334 - HMPREF1058_RS10935 0.77 -1.2 523,367 - HMPREF1058_RS10935 0.79 -1.0 523,367 - HMPREF1058_RS10935 0.79 +0.4 523,423 - -1.1 523,423 - HMPREF1058_RS10935 0.82 +0.3 523,423 - HMPREF1058_RS10935 0.82 +0.5 523,439 + HMPREF1058_RS10935 0.83 +1.4 523,554 + +2.4 523,555 - -0.9 523,555 - +3.3 523,558 + +1.0 523,604 - -2.9 523,607 + +3.6 523,607 + +1.1 523,608 - -1.7 523,608 - +0.7 523,608 - -1.1 523,672 + -0.1 523,672 + -0.6 523,682 - +0.5 523,740 + +0.9 523,741 - +0.9 523,766 + -0.7 523,766 + +1.6 523,771 - +2.0 523,816 + +0.9 523,828 - -2.1 523,873 - -1.1 523,908 + +1.0 523,908 + -0.4 523,908 + +2.0 523,924 + -2.1 523,925 - +1.3 523,929 - -1.4 523,986 + +0.7 524,041 - HMPREF1058_RS10930 0.11 +0.9 524,044 + HMPREF1058_RS10930 0.11 -1.1 524,045 - HMPREF1058_RS10930 0.11 +0.8 524,064 + HMPREF1058_RS10930 0.11 +1.0 524,064 + HMPREF1058_RS10930 0.11 +0.3 524,140 + HMPREF1058_RS10930 0.14 +0.5 524,145 + HMPREF1058_RS10930 0.14 -1.4 524,212 + HMPREF1058_RS10930 0.16 +0.4 524,289 + HMPREF1058_RS10930 0.19 -0.9 524,344 + HMPREF1058_RS10930 0.21 +0.4 524,345 - HMPREF1058_RS10930 0.21 -0.5 524,419 - HMPREF1058_RS10930 0.23 -0.4 524,421 - HMPREF1058_RS10930 0.23 -1.1 524,424 + HMPREF1058_RS10930 0.23 -0.1 524,424 + HMPREF1058_RS10930 0.23 -0.9 524,425 - HMPREF1058_RS10930 0.23 -1.4 524,427 + HMPREF1058_RS10930 0.23 -1.7 524,428 - HMPREF1058_RS10930 0.23 +1.7 524,532 + HMPREF1058_RS10930 0.27 -0.7 524,557 + HMPREF1058_RS10930 0.27 -0.3 524,565 + HMPREF1058_RS10930 0.28 +1.3 524,566 - HMPREF1058_RS10930 0.28 -0.1 524,575 + HMPREF1058_RS10930 0.28 +1.8 524,656 - HMPREF1058_RS10930 0.31 +1.1 524,659 - HMPREF1058_RS10930 0.31 -1.9 524,680 + HMPREF1058_RS10930 0.31 +0.1
Or see this region's nucleotide sequence