Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02495 and HMPREF1058_RS02490 are separated by 41 nucleotides HMPREF1058_RS02490 and HMPREF1058_RS02485 are separated by 35 nucleotides HMPREF1058_RS02485 and HMPREF1058_RS02480 are separated by 5 nucleotides
HMPREF1058_RS02495: HMPREF1058_RS02495 - acyl-CoA dehydrogenase family protein, at 169,412 to 171,118
_RS02495
HMPREF1058_RS02490: HMPREF1058_RS02490 - four helix bundle protein, at 171,160 to 171,540
_RS02490
HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595
_RS02485
HMPREF1058_RS02480: HMPREF1058_RS02480 - electron transfer flavoprotein subunit beta/FixA family protein, at 172,601 to 173,494
_RS02480
Position (kb) 171
172
173 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 170.670 kb on + strand, within HMPREF1058_RS02495 at 170.671 kb on - strand, within HMPREF1058_RS02495 at 170.989 kb on - strand at 171.020 kb on - strand at 171.096 kb on - strand at 171.129 kb on - strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.145 kb on - strand at 171.145 kb on - strand at 171.151 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.162 kb on - strand at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.558 kb on - strand at 171.561 kb on + strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.596 kb on - strand at 171.598 kb on + strand at 171.642 kb on + strand at 171.643 kb on - strand at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.998 kb on - strand, within HMPREF1058_RS02485 at 172.172 kb on - strand, within HMPREF1058_RS02485 at 172.273 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.407 kb on + strand, within HMPREF1058_RS02485 at 172.437 kb on + strand, within HMPREF1058_RS02485 at 172.510 kb on - strand at 172.578 kb on + strand at 172.578 kb on + strand at 172.584 kb on + strand at 172.608 kb on - strand at 172.612 kb on + strand at 172.613 kb on - strand at 172.764 kb on - strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.815 kb on - strand, within HMPREF1058_RS02480 at 173.057 kb on - strand, within HMPREF1058_RS02480 at 173.168 kb on - strand, within HMPREF1058_RS02480 at 173.235 kb on + strand, within HMPREF1058_RS02480 at 173.236 kb on - strand, within HMPREF1058_RS02480 at 173.238 kb on - strand, within HMPREF1058_RS02480 at 173.475 kb on - strand at 173.477 kb on + strand at 173.497 kb on - strand at 173.516 kb on + strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 remove 170,670 + HMPREF1058_RS02495 0.74 -3.8 170,671 - HMPREF1058_RS02495 0.74 -2.3 170,989 - -3.5 171,020 - -2.3 171,096 - -3.3 171,129 - -0.1 171,132 + -2.3 171,132 + -1.0 171,132 + -4.5 171,145 - -0.7 171,145 - -0.6 171,151 + -3.0 171,161 + +0.0 171,161 + -2.0 171,161 + -1.0 171,162 - -0.4 171,239 - HMPREF1058_RS02490 0.21 +0.2 171,239 - HMPREF1058_RS02490 0.21 +2.5 171,558 - -1.4 171,561 + -1.6 171,562 - -0.7 171,562 - +0.0 171,562 - -1.0 171,562 - -1.0 171,596 - -4.4 171,598 + -1.0 171,642 + -1.3 171,643 - -4.8 171,997 + HMPREF1058_RS02485 0.41 +0.0 171,997 + HMPREF1058_RS02485 0.41 -4.4 171,997 + HMPREF1058_RS02485 0.41 -2.8 171,997 + HMPREF1058_RS02485 0.41 -4.2 171,998 - HMPREF1058_RS02485 0.41 -2.3 172,172 - HMPREF1058_RS02485 0.58 -2.3 172,273 - HMPREF1058_RS02485 0.68 -3.7 172,380 - HMPREF1058_RS02485 0.79 -3.2 172,380 - HMPREF1058_RS02485 0.79 -2.8 172,407 + HMPREF1058_RS02485 0.81 -1.6 172,437 + HMPREF1058_RS02485 0.84 -3.9 172,510 - -3.9 172,578 + -3.8 172,578 + -1.0 172,584 + -4.5 172,608 - +1.3 172,612 + -3.0 172,613 - -3.3 172,764 - HMPREF1058_RS02480 0.18 -2.6 172,814 + HMPREF1058_RS02480 0.24 -1.0 172,814 + HMPREF1058_RS02480 0.24 -3.0 172,814 + HMPREF1058_RS02480 0.24 -4.1 172,815 - HMPREF1058_RS02480 0.24 -2.3 173,057 - HMPREF1058_RS02480 0.51 +0.0 173,168 - HMPREF1058_RS02480 0.63 -4.5 173,235 + HMPREF1058_RS02480 0.71 -2.3 173,236 - HMPREF1058_RS02480 0.71 +0.0 173,238 - HMPREF1058_RS02480 0.71 -1.6 173,475 - -3.9 173,477 + -2.8 173,497 - -1.0 173,516 + -1.0 173,517 - +0.5 173,517 - +0.5 173,517 - +2.0 173,580 + -3.2
Or see this region's nucleotide sequence