Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18445 and HMPREF1058_RS0119295 overlap by 25 nucleotides HMPREF1058_RS0119295 and HMPREF1058_RS18440 are separated by 6 nucleotides
HMPREF1058_RS18445: HMPREF1058_RS18445 - polysaccharide pyruvyl transferase family protein, at 152,631 to 153,917
_RS18445
HMPREF1058_RS0119295: HMPREF1058_RS0119295 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 153,893 to 155,173
_RS0119295
HMPREF1058_RS18440: HMPREF1058_RS18440 - hypothetical protein, at 155,180 to 156,712
_RS18440
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 152.894 kb on + strand, within HMPREF1058_RS18445 at 152.895 kb on - strand, within HMPREF1058_RS18445 at 152.900 kb on + strand, within HMPREF1058_RS18445 at 152.953 kb on + strand, within HMPREF1058_RS18445 at 152.971 kb on + strand, within HMPREF1058_RS18445 at 152.985 kb on - strand, within HMPREF1058_RS18445 at 152.990 kb on - strand, within HMPREF1058_RS18445 at 153.015 kb on + strand, within HMPREF1058_RS18445 at 153.094 kb on - strand, within HMPREF1058_RS18445 at 153.192 kb on + strand, within HMPREF1058_RS18445 at 153.257 kb on - strand, within HMPREF1058_RS18445 at 153.306 kb on + strand, within HMPREF1058_RS18445 at 153.321 kb on + strand, within HMPREF1058_RS18445 at 153.324 kb on - strand, within HMPREF1058_RS18445 at 153.342 kb on - strand, within HMPREF1058_RS18445 at 153.397 kb on + strand, within HMPREF1058_RS18445 at 153.461 kb on - strand, within HMPREF1058_RS18445 at 153.467 kb on + strand, within HMPREF1058_RS18445 at 153.498 kb on - strand, within HMPREF1058_RS18445 at 153.599 kb on - strand, within HMPREF1058_RS18445 at 153.601 kb on - strand, within HMPREF1058_RS18445 at 153.608 kb on + strand, within HMPREF1058_RS18445 at 153.609 kb on - strand, within HMPREF1058_RS18445 at 153.694 kb on - strand, within HMPREF1058_RS18445 at 153.751 kb on + strand, within HMPREF1058_RS18445 at 153.751 kb on + strand, within HMPREF1058_RS18445 at 153.755 kb on + strand, within HMPREF1058_RS18445 at 153.775 kb on - strand, within HMPREF1058_RS18445 at 153.795 kb on - strand at 153.842 kb on - strand at 154.025 kb on - strand, within HMPREF1058_RS0119295 at 154.124 kb on - strand, within HMPREF1058_RS0119295 at 154.201 kb on + strand, within HMPREF1058_RS0119295 at 154.219 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.250 kb on + strand, within HMPREF1058_RS0119295 at 154.251 kb on - strand, within HMPREF1058_RS0119295 at 154.310 kb on - strand, within HMPREF1058_RS0119295 at 154.347 kb on + strand, within HMPREF1058_RS0119295 at 154.351 kb on + strand, within HMPREF1058_RS0119295 at 154.366 kb on + strand, within HMPREF1058_RS0119295 at 154.387 kb on + strand, within HMPREF1058_RS0119295 at 154.406 kb on - strand, within HMPREF1058_RS0119295 at 154.415 kb on - strand, within HMPREF1058_RS0119295 at 154.442 kb on - strand, within HMPREF1058_RS0119295 at 154.535 kb on - strand, within HMPREF1058_RS0119295 at 154.599 kb on - strand, within HMPREF1058_RS0119295 at 154.603 kb on + strand, within HMPREF1058_RS0119295 at 154.604 kb on - strand, within HMPREF1058_RS0119295 at 154.627 kb on + strand, within HMPREF1058_RS0119295 at 154.634 kb on + strand, within HMPREF1058_RS0119295 at 154.651 kb on + strand, within HMPREF1058_RS0119295 at 154.653 kb on + strand, within HMPREF1058_RS0119295 at 154.654 kb on - strand, within HMPREF1058_RS0119295 at 154.685 kb on + strand, within HMPREF1058_RS0119295 at 154.751 kb on - strand, within HMPREF1058_RS0119295 at 154.753 kb on - strand, within HMPREF1058_RS0119295 at 154.868 kb on + strand, within HMPREF1058_RS0119295 at 154.957 kb on + strand, within HMPREF1058_RS0119295 at 154.957 kb on + strand, within HMPREF1058_RS0119295 at 154.969 kb on - strand, within HMPREF1058_RS0119295 at 154.970 kb on + strand, within HMPREF1058_RS0119295 at 154.971 kb on - strand, within HMPREF1058_RS0119295 at 154.971 kb on - strand, within HMPREF1058_RS0119295 at 154.984 kb on + strand, within HMPREF1058_RS0119295 at 155.015 kb on + strand, within HMPREF1058_RS0119295 at 155.016 kb on - strand, within HMPREF1058_RS0119295 at 155.028 kb on - strand, within HMPREF1058_RS0119295 at 155.042 kb on - strand, within HMPREF1058_RS0119295 at 155.178 kb on + strand at 155.198 kb on - strand at 155.253 kb on + strand at 155.258 kb on + strand at 155.259 kb on - strand at 155.288 kb on + strand at 155.324 kb on + strand at 155.324 kb on + strand at 155.325 kb on - strand at 155.326 kb on + strand at 155.327 kb on - strand at 155.473 kb on + strand, within HMPREF1058_RS18440 at 155.517 kb on + strand, within HMPREF1058_RS18440 at 155.518 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.526 kb on - strand, within HMPREF1058_RS18440 at 155.679 kb on + strand, within HMPREF1058_RS18440 at 155.702 kb on + strand, within HMPREF1058_RS18440 at 155.711 kb on + strand, within HMPREF1058_RS18440 at 155.711 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.713 kb on + strand, within HMPREF1058_RS18440 at 155.715 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.758 kb on + strand at 155.758 kb on + strand, within HMPREF1058_RS18440 at 155.760 kb on - strand, within HMPREF1058_RS18440 at 155.784 kb on - strand, within HMPREF1058_RS18440 at 155.802 kb on + strand, within HMPREF1058_RS18440 at 155.803 kb on - strand, within HMPREF1058_RS18440 at 155.904 kb on - strand, within HMPREF1058_RS18440 at 155.947 kb on + strand, within HMPREF1058_RS18440 at 155.954 kb on - strand, within HMPREF1058_RS18440 at 155.995 kb on + strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 155.998 kb on - strand, within HMPREF1058_RS18440 at 156.016 kb on + strand, within HMPREF1058_RS18440 at 156.016 kb on + strand, within HMPREF1058_RS18440 at 156.017 kb on - strand, within HMPREF1058_RS18440 at 156.017 kb on - strand, within HMPREF1058_RS18440 at 156.022 kb on + strand, within HMPREF1058_RS18440 at 156.091 kb on + strand, within HMPREF1058_RS18440 at 156.092 kb on - strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.098 kb on + strand, within HMPREF1058_RS18440 at 156.110 kb on + strand, within HMPREF1058_RS18440 at 156.110 kb on + strand, within HMPREF1058_RS18440 at 156.112 kb on + strand, within HMPREF1058_RS18440 at 156.113 kb on - strand, within HMPREF1058_RS18440 at 156.146 kb on - strand, within HMPREF1058_RS18440 at 156.148 kb on + strand, within HMPREF1058_RS18440 at 156.165 kb on - strand, within HMPREF1058_RS18440 at 156.165 kb on - strand, within HMPREF1058_RS18440 at 156.166 kb on + strand, within HMPREF1058_RS18440 at 156.168 kb on + strand, within HMPREF1058_RS18440
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 remove 152,894 + HMPREF1058_RS18445 0.20 -0.9 152,895 - HMPREF1058_RS18445 0.21 -2.1 152,900 + HMPREF1058_RS18445 0.21 +0.6 152,953 + HMPREF1058_RS18445 0.25 +1.5 152,971 + HMPREF1058_RS18445 0.26 +0.5 152,985 - HMPREF1058_RS18445 0.28 +0.8 152,990 - HMPREF1058_RS18445 0.28 -1.7 153,015 + HMPREF1058_RS18445 0.30 -0.7 153,094 - HMPREF1058_RS18445 0.36 -2.7 153,192 + HMPREF1058_RS18445 0.44 +1.8 153,257 - HMPREF1058_RS18445 0.49 -1.5 153,306 + HMPREF1058_RS18445 0.52 +0.1 153,321 + HMPREF1058_RS18445 0.54 +0.5 153,324 - HMPREF1058_RS18445 0.54 -2.3 153,342 - HMPREF1058_RS18445 0.55 -0.2 153,397 + HMPREF1058_RS18445 0.60 +1.1 153,461 - HMPREF1058_RS18445 0.64 +0.6 153,467 + HMPREF1058_RS18445 0.65 +2.4 153,498 - HMPREF1058_RS18445 0.67 -0.9 153,599 - HMPREF1058_RS18445 0.75 +0.1 153,601 - HMPREF1058_RS18445 0.75 -0.8 153,608 + HMPREF1058_RS18445 0.76 -1.0 153,609 - HMPREF1058_RS18445 0.76 -2.5 153,694 - HMPREF1058_RS18445 0.83 +0.1 153,751 + HMPREF1058_RS18445 0.87 -0.5 153,751 + HMPREF1058_RS18445 0.87 +0.5 153,755 + HMPREF1058_RS18445 0.87 +1.3 153,775 - HMPREF1058_RS18445 0.89 -3.9 153,795 - -1.9 153,842 - -3.5 154,025 - HMPREF1058_RS0119295 0.10 -1.2 154,124 - HMPREF1058_RS0119295 0.18 -3.3 154,201 + HMPREF1058_RS0119295 0.24 -0.8 154,219 + HMPREF1058_RS0119295 0.25 -1.5 154,250 + HMPREF1058_RS0119295 0.28 +1.1 154,250 + HMPREF1058_RS0119295 0.28 -1.7 154,250 + HMPREF1058_RS0119295 0.28 +0.1 154,251 - HMPREF1058_RS0119295 0.28 -0.9 154,310 - HMPREF1058_RS0119295 0.33 -2.2 154,347 + HMPREF1058_RS0119295 0.35 -0.3 154,351 + HMPREF1058_RS0119295 0.36 -0.3 154,366 + HMPREF1058_RS0119295 0.37 +0.1 154,387 + HMPREF1058_RS0119295 0.39 +1.1 154,406 - HMPREF1058_RS0119295 0.40 -1.9 154,415 - HMPREF1058_RS0119295 0.41 -2.5 154,442 - HMPREF1058_RS0119295 0.43 -0.6 154,535 - HMPREF1058_RS0119295 0.50 -0.9 154,599 - HMPREF1058_RS0119295 0.55 -1.5 154,603 + HMPREF1058_RS0119295 0.55 -1.5 154,604 - HMPREF1058_RS0119295 0.56 -2.5 154,627 + HMPREF1058_RS0119295 0.57 +1.1 154,634 + HMPREF1058_RS0119295 0.58 -1.5 154,651 + HMPREF1058_RS0119295 0.59 +0.2 154,653 + HMPREF1058_RS0119295 0.59 +2.9 154,654 - HMPREF1058_RS0119295 0.59 -1.9 154,685 + HMPREF1058_RS0119295 0.62 -0.9 154,751 - HMPREF1058_RS0119295 0.67 +0.4 154,753 - HMPREF1058_RS0119295 0.67 -0.3 154,868 + HMPREF1058_RS0119295 0.76 +0.1 154,957 + HMPREF1058_RS0119295 0.83 +0.5 154,957 + HMPREF1058_RS0119295 0.83 +1.5 154,969 - HMPREF1058_RS0119295 0.84 -1.5 154,970 + HMPREF1058_RS0119295 0.84 -1.9 154,971 - HMPREF1058_RS0119295 0.84 -0.1 154,971 - HMPREF1058_RS0119295 0.84 -0.9 154,984 + HMPREF1058_RS0119295 0.85 -1.9 155,015 + HMPREF1058_RS0119295 0.88 +0.8 155,016 - HMPREF1058_RS0119295 0.88 +2.7 155,028 - HMPREF1058_RS0119295 0.89 -1.5 155,042 - HMPREF1058_RS0119295 0.90 -1.7 155,178 + +2.0 155,198 - -2.9 155,253 + -2.5 155,258 + +2.2 155,259 - -1.5 155,288 + +0.2 155,324 + -0.9 155,324 + +1.1 155,325 - -2.3 155,326 + +1.3 155,327 - -2.3 155,473 + HMPREF1058_RS18440 0.19 -0.3 155,517 + HMPREF1058_RS18440 0.22 -0.9 155,518 - HMPREF1058_RS18440 0.22 -3.7 155,526 - HMPREF1058_RS18440 0.23 -0.9 155,526 - HMPREF1058_RS18440 0.23 -3.1 155,526 - HMPREF1058_RS18440 0.23 -1.9 155,679 + HMPREF1058_RS18440 0.33 -1.5 155,702 + HMPREF1058_RS18440 0.34 -1.9 155,711 + HMPREF1058_RS18440 0.35 -0.9 155,711 + HMPREF1058_RS18440 0.35 -0.3 155,713 + HMPREF1058_RS18440 0.35 -1.8 155,713 + HMPREF1058_RS18440 0.35 -1.5 155,713 + HMPREF1058_RS18440 0.35 +0.5 155,713 + HMPREF1058_RS18440 0.35 +0.6 155,715 + HMPREF1058_RS18440 0.35 -1.5 155,758 + HMPREF1058_RS18440 0.38 -0.1 155,758 + HMPREF1058_RS18440 0.38 -1.5 155,758 + HMPREF1058_RS18440 0.38 +2.7 155,758 + -0.9 155,758 + HMPREF1058_RS18440 0.38 -0.5 155,760 - HMPREF1058_RS18440 0.38 -1.2 155,784 - HMPREF1058_RS18440 0.39 -0.3 155,802 + HMPREF1058_RS18440 0.41 +0.9 155,803 - HMPREF1058_RS18440 0.41 -0.9 155,904 - HMPREF1058_RS18440 0.47 -0.6 155,947 + HMPREF1058_RS18440 0.50 +0.6 155,954 - HMPREF1058_RS18440 0.50 +2.7 155,995 + HMPREF1058_RS18440 0.53 -1.5 155,998 - HMPREF1058_RS18440 0.53 -2.9 155,998 - HMPREF1058_RS18440 0.53 -3.3 155,998 - HMPREF1058_RS18440 0.53 -1.5 155,998 - HMPREF1058_RS18440 0.53 -0.7 156,016 + HMPREF1058_RS18440 0.55 +0.1 156,016 + HMPREF1058_RS18440 0.55 -0.3 156,017 - HMPREF1058_RS18440 0.55 -1.9 156,017 - HMPREF1058_RS18440 0.55 -0.7 156,022 + HMPREF1058_RS18440 0.55 -0.9 156,091 + HMPREF1058_RS18440 0.59 +0.4 156,092 - HMPREF1058_RS18440 0.59 +0.8 156,098 + HMPREF1058_RS18440 0.60 +0.1 156,098 + HMPREF1058_RS18440 0.60 -0.7 156,098 + HMPREF1058_RS18440 0.60 +0.5 156,110 + HMPREF1058_RS18440 0.61 +0.1 156,110 + HMPREF1058_RS18440 0.61 -0.1 156,112 + HMPREF1058_RS18440 0.61 +1.1 156,113 - HMPREF1058_RS18440 0.61 -1.7 156,146 - HMPREF1058_RS18440 0.63 -1.2 156,148 + HMPREF1058_RS18440 0.63 +0.1 156,165 - HMPREF1058_RS18440 0.64 -0.9 156,165 - HMPREF1058_RS18440 0.64 -1.5 156,166 + HMPREF1058_RS18440 0.64 +0.6 156,168 + HMPREF1058_RS18440 0.64 +1.7
Or see this region's nucleotide sequence