Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15515 and HMPREF1058_RS15510 are separated by 82 nucleotides HMPREF1058_RS15510 and HMPREF1058_RS15505 are separated by 90 nucleotides HMPREF1058_RS15505 and HMPREF1058_RS15500 are separated by 51 nucleotides
HMPREF1058_RS15515: HMPREF1058_RS15515 - alpha-1,3-galactosidase, at 897,031 to 898,848
_RS15515
HMPREF1058_RS15510: HMPREF1058_RS15510 - xanthan lyase, at 898,931 to 901,801
_RS15510
HMPREF1058_RS15505: HMPREF1058_RS15505 - hypothetical protein, at 901,892 to 902,209
_RS15505
HMPREF1058_RS15500: HMPREF1058_RS15500 - YgiQ family radical SAM protein, at 902,261 to 904,150
_RS15500
Position (kb) 898
899
900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 897.960 kb on - strand, within HMPREF1058_RS15515 at 898.022 kb on - strand, within HMPREF1058_RS15515 at 898.022 kb on - strand, within HMPREF1058_RS15515 at 898.042 kb on - strand, within HMPREF1058_RS15515 at 898.102 kb on + strand, within HMPREF1058_RS15515 at 898.103 kb on - strand, within HMPREF1058_RS15515 at 898.187 kb on + strand, within HMPREF1058_RS15515 at 898.187 kb on + strand, within HMPREF1058_RS15515 at 898.188 kb on - strand, within HMPREF1058_RS15515 at 898.221 kb on + strand, within HMPREF1058_RS15515 at 898.222 kb on - strand, within HMPREF1058_RS15515 at 898.419 kb on + strand, within HMPREF1058_RS15515 at 898.420 kb on - strand, within HMPREF1058_RS15515 at 898.438 kb on + strand, within HMPREF1058_RS15515 at 898.438 kb on + strand, within HMPREF1058_RS15515 at 898.459 kb on - strand, within HMPREF1058_RS15515 at 898.459 kb on - strand, within HMPREF1058_RS15515 at 898.568 kb on - strand, within HMPREF1058_RS15515 at 898.605 kb on - strand, within HMPREF1058_RS15515 at 898.605 kb on - strand, within HMPREF1058_RS15515 at 898.607 kb on + strand, within HMPREF1058_RS15515 at 898.786 kb on - strand at 898.786 kb on - strand at 898.911 kb on + strand at 898.974 kb on + strand at 899.006 kb on - strand at 899.054 kb on + strand at 899.054 kb on + strand at 899.064 kb on + strand at 899.079 kb on + strand at 899.176 kb on + strand at 899.176 kb on + strand at 899.176 kb on + strand at 899.177 kb on - strand at 899.203 kb on - strand at 899.229 kb on + strand, within HMPREF1058_RS15510 at 899.324 kb on + strand, within HMPREF1058_RS15510 at 899.428 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.518 kb on + strand, within HMPREF1058_RS15510 at 899.524 kb on - strand, within HMPREF1058_RS15510 at 899.555 kb on + strand, within HMPREF1058_RS15510 at 899.828 kb on + strand, within HMPREF1058_RS15510 at 899.837 kb on + strand, within HMPREF1058_RS15510 at 899.838 kb on - strand, within HMPREF1058_RS15510 at 899.888 kb on - strand, within HMPREF1058_RS15510 at 899.997 kb on + strand, within HMPREF1058_RS15510 at 900.000 kb on + strand, within HMPREF1058_RS15510 at 900.000 kb on + strand, within HMPREF1058_RS15510 at 900.178 kb on + strand, within HMPREF1058_RS15510 at 900.178 kb on + strand, within HMPREF1058_RS15510 at 900.188 kb on + strand, within HMPREF1058_RS15510 at 900.190 kb on + strand, within HMPREF1058_RS15510 at 900.199 kb on + strand, within HMPREF1058_RS15510 at 900.202 kb on - strand, within HMPREF1058_RS15510 at 900.337 kb on - strand, within HMPREF1058_RS15510 at 900.356 kb on + strand, within HMPREF1058_RS15510 at 900.356 kb on + strand, within HMPREF1058_RS15510 at 900.357 kb on - strand, within HMPREF1058_RS15510 at 900.368 kb on + strand, within HMPREF1058_RS15510 at 900.370 kb on + strand, within HMPREF1058_RS15510 at 900.374 kb on - strand, within HMPREF1058_RS15510 at 900.433 kb on - strand, within HMPREF1058_RS15510 at 900.455 kb on - strand, within HMPREF1058_RS15510 at 900.645 kb on + strand, within HMPREF1058_RS15510 at 900.659 kb on - strand, within HMPREF1058_RS15510 at 900.678 kb on - strand, within HMPREF1058_RS15510 at 900.699 kb on + strand, within HMPREF1058_RS15510 at 900.801 kb on - strand, within HMPREF1058_RS15510 at 900.805 kb on - strand, within HMPREF1058_RS15510 at 900.809 kb on + strand, within HMPREF1058_RS15510 at 900.810 kb on - strand, within HMPREF1058_RS15510 at 900.810 kb on - strand, within HMPREF1058_RS15510 at 900.866 kb on + strand, within HMPREF1058_RS15510 at 900.868 kb on + strand, within HMPREF1058_RS15510 at 900.869 kb on - strand, within HMPREF1058_RS15510 at 900.897 kb on - strand, within HMPREF1058_RS15510 at 900.898 kb on + strand, within HMPREF1058_RS15510 at 900.898 kb on + strand, within HMPREF1058_RS15510 at 900.909 kb on + strand, within HMPREF1058_RS15510 at 900.910 kb on - strand, within HMPREF1058_RS15510 at 900.980 kb on - strand, within HMPREF1058_RS15510 at 901.035 kb on + strand, within HMPREF1058_RS15510 at 901.083 kb on + strand, within HMPREF1058_RS15510 at 901.089 kb on - strand, within HMPREF1058_RS15510 at 901.091 kb on - strand, within HMPREF1058_RS15510 at 901.439 kb on + strand, within HMPREF1058_RS15510 at 901.440 kb on - strand, within HMPREF1058_RS15510 at 901.443 kb on + strand, within HMPREF1058_RS15510 at 901.444 kb on - strand, within HMPREF1058_RS15510 at 901.491 kb on + strand, within HMPREF1058_RS15510 at 901.494 kb on + strand, within HMPREF1058_RS15510 at 901.495 kb on - strand, within HMPREF1058_RS15510 at 901.495 kb on - strand, within HMPREF1058_RS15510 at 901.542 kb on + strand at 901.542 kb on + strand at 901.543 kb on - strand at 901.543 kb on - strand at 901.596 kb on - strand at 901.596 kb on - strand at 901.655 kb on + strand at 901.656 kb on - strand at 901.657 kb on + strand at 901.670 kb on + strand at 901.700 kb on + strand at 901.830 kb on + strand at 901.830 kb on + strand at 901.838 kb on + strand at 901.838 kb on + strand at 901.838 kb on + strand at 901.878 kb on - strand at 901.892 kb on - strand at 901.895 kb on + strand at 901.895 kb on + strand at 901.895 kb on + strand at 901.900 kb on + strand at 901.901 kb on - strand at 901.902 kb on + strand at 901.902 kb on + strand at 901.902 kb on + strand at 901.961 kb on - strand, within HMPREF1058_RS15505 at 901.970 kb on + strand, within HMPREF1058_RS15505 at 901.970 kb on + strand, within HMPREF1058_RS15505 at 901.977 kb on + strand, within HMPREF1058_RS15505 at 902.080 kb on + strand, within HMPREF1058_RS15505 at 902.109 kb on + strand, within HMPREF1058_RS15505 at 902.119 kb on + strand, within HMPREF1058_RS15505 at 902.206 kb on - strand at 902.208 kb on - strand at 902.208 kb on - strand at 902.232 kb on + strand at 902.256 kb on + strand at 902.310 kb on + strand at 902.340 kb on + strand at 902.340 kb on + strand at 902.368 kb on - strand at 902.525 kb on - strand, within HMPREF1058_RS15500 at 902.667 kb on + strand, within HMPREF1058_RS15500 at 902.687 kb on - strand, within HMPREF1058_RS15500 at 902.688 kb on + strand, within HMPREF1058_RS15500 at 902.689 kb on - strand, within HMPREF1058_RS15500 at 902.743 kb on + strand, within HMPREF1058_RS15500 at 902.757 kb on + strand, within HMPREF1058_RS15500 at 902.775 kb on + strand, within HMPREF1058_RS15500
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 897,960 - HMPREF1058_RS15515 0.51 +0.9 898,022 - HMPREF1058_RS15515 0.55 -0.1 898,022 - HMPREF1058_RS15515 0.55 -0.6 898,042 - HMPREF1058_RS15515 0.56 -1.7 898,102 + HMPREF1058_RS15515 0.59 +0.6 898,103 - HMPREF1058_RS15515 0.59 +1.1 898,187 + HMPREF1058_RS15515 0.64 +0.2 898,187 + HMPREF1058_RS15515 0.64 -0.1 898,188 - HMPREF1058_RS15515 0.64 +0.6 898,221 + HMPREF1058_RS15515 0.65 -0.5 898,222 - HMPREF1058_RS15515 0.66 +0.4 898,419 + HMPREF1058_RS15515 0.76 +4.4 898,420 - HMPREF1058_RS15515 0.76 +0.9 898,438 + HMPREF1058_RS15515 0.77 +0.4 898,438 + HMPREF1058_RS15515 0.77 +1.9 898,459 - HMPREF1058_RS15515 0.79 +1.5 898,459 - HMPREF1058_RS15515 0.79 +0.5 898,568 - HMPREF1058_RS15515 0.85 -0.1 898,605 - HMPREF1058_RS15515 0.87 -0.7 898,605 - HMPREF1058_RS15515 0.87 -0.8 898,607 + HMPREF1058_RS15515 0.87 -2.2 898,786 - +2.9 898,786 - -1.2 898,911 + -0.8 898,974 + +0.8 899,006 - -1.5 899,054 + +1.7 899,054 + -1.1 899,064 + -0.1 899,079 + +0.9 899,176 + +3.7 899,176 + +1.6 899,176 + -0.4 899,177 - -1.2 899,203 - +0.1 899,229 + HMPREF1058_RS15510 0.10 +2.4 899,324 + HMPREF1058_RS15510 0.14 -0.1 899,428 + HMPREF1058_RS15510 0.17 +0.6 899,518 + HMPREF1058_RS15510 0.20 -1.4 899,518 + HMPREF1058_RS15510 0.20 +1.7 899,518 + HMPREF1058_RS15510 0.20 +0.7 899,518 + HMPREF1058_RS15510 0.20 +0.1 899,524 - HMPREF1058_RS15510 0.21 +1.0 899,555 + HMPREF1058_RS15510 0.22 +0.9 899,828 + HMPREF1058_RS15510 0.31 -1.2 899,837 + HMPREF1058_RS15510 0.32 -0.4 899,838 - HMPREF1058_RS15510 0.32 +1.6 899,888 - HMPREF1058_RS15510 0.33 -2.1 899,997 + HMPREF1058_RS15510 0.37 +1.0 900,000 + HMPREF1058_RS15510 0.37 -0.1 900,000 + HMPREF1058_RS15510 0.37 -1.1 900,178 + HMPREF1058_RS15510 0.43 +1.4 900,178 + HMPREF1058_RS15510 0.43 +0.8 900,188 + HMPREF1058_RS15510 0.44 +0.2 900,190 + HMPREF1058_RS15510 0.44 -0.9 900,199 + HMPREF1058_RS15510 0.44 +1.4 900,202 - HMPREF1058_RS15510 0.44 +0.6 900,337 - HMPREF1058_RS15510 0.49 +0.1 900,356 + HMPREF1058_RS15510 0.50 -0.1 900,356 + HMPREF1058_RS15510 0.50 +4.4 900,357 - HMPREF1058_RS15510 0.50 -0.0 900,368 + HMPREF1058_RS15510 0.50 +1.1 900,370 + HMPREF1058_RS15510 0.50 +0.3 900,374 - HMPREF1058_RS15510 0.50 +0.2 900,433 - HMPREF1058_RS15510 0.52 +1.4 900,455 - HMPREF1058_RS15510 0.53 +1.8 900,645 + HMPREF1058_RS15510 0.60 +0.5 900,659 - HMPREF1058_RS15510 0.60 +0.5 900,678 - HMPREF1058_RS15510 0.61 +2.3 900,699 + HMPREF1058_RS15510 0.62 +0.6 900,801 - HMPREF1058_RS15510 0.65 -0.5 900,805 - HMPREF1058_RS15510 0.65 -0.1 900,809 + HMPREF1058_RS15510 0.65 +1.9 900,810 - HMPREF1058_RS15510 0.65 -0.6 900,810 - HMPREF1058_RS15510 0.65 +0.0 900,866 + HMPREF1058_RS15510 0.67 -0.7 900,868 + HMPREF1058_RS15510 0.67 -0.1 900,869 - HMPREF1058_RS15510 0.68 +0.8 900,897 - HMPREF1058_RS15510 0.68 -1.1 900,898 + HMPREF1058_RS15510 0.69 -0.1 900,898 + HMPREF1058_RS15510 0.69 -1.7 900,909 + HMPREF1058_RS15510 0.69 +2.4 900,910 - HMPREF1058_RS15510 0.69 +3.3 900,980 - HMPREF1058_RS15510 0.71 -0.2 901,035 + HMPREF1058_RS15510 0.73 +3.0 901,083 + HMPREF1058_RS15510 0.75 +0.4 901,089 - HMPREF1058_RS15510 0.75 +0.6 901,091 - HMPREF1058_RS15510 0.75 +1.2 901,439 + HMPREF1058_RS15510 0.87 +0.1 901,440 - HMPREF1058_RS15510 0.87 -0.4 901,443 + HMPREF1058_RS15510 0.87 -0.3 901,444 - HMPREF1058_RS15510 0.88 +0.6 901,491 + HMPREF1058_RS15510 0.89 -1.2 901,494 + HMPREF1058_RS15510 0.89 +1.1 901,495 - HMPREF1058_RS15510 0.89 +0.8 901,495 - HMPREF1058_RS15510 0.89 -1.7 901,542 + -0.7 901,542 + -1.4 901,543 - +0.8 901,543 - -0.0 901,596 - -0.1 901,596 - -0.5 901,655 + -0.3 901,656 - -1.6 901,657 + -1.2 901,670 + +1.0 901,700 + -0.3 901,830 + +0.4 901,830 + +0.5 901,838 + -0.1 901,838 + +1.6 901,838 + +0.3 901,878 - -0.3 901,892 - -1.1 901,895 + -2.0 901,895 + -1.4 901,895 + +2.3 901,900 + +0.7 901,901 - -0.7 901,902 + +0.3 901,902 + +1.4 901,902 + +1.5 901,961 - HMPREF1058_RS15505 0.22 +1.9 901,970 + HMPREF1058_RS15505 0.25 +1.5 901,970 + HMPREF1058_RS15505 0.25 +0.2 901,977 + HMPREF1058_RS15505 0.27 +2.4 902,080 + HMPREF1058_RS15505 0.59 -0.5 902,109 + HMPREF1058_RS15505 0.68 -1.2 902,119 + HMPREF1058_RS15505 0.71 +0.9 902,206 - -0.6 902,208 - +0.2 902,208 - +0.7 902,232 + +3.2 902,256 + -0.4 902,310 + +1.6 902,340 + +1.5 902,340 + -0.5 902,368 - -0.3 902,525 - HMPREF1058_RS15500 0.14 -0.1 902,667 + HMPREF1058_RS15500 0.21 -0.1 902,687 - HMPREF1058_RS15500 0.23 -1.1 902,688 + HMPREF1058_RS15500 0.23 -0.8 902,689 - HMPREF1058_RS15500 0.23 -0.2 902,743 + HMPREF1058_RS15500 0.26 +2.5 902,757 + HMPREF1058_RS15500 0.26 -0.5 902,775 + HMPREF1058_RS15500 0.27 -1.7
Or see this region's nucleotide sequence