Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14850 and HMPREF1058_RS14845 are separated by 329 nucleotides HMPREF1058_RS14845 and HMPREF1058_RS14840 are separated by 28 nucleotides
HMPREF1058_RS14850: HMPREF1058_RS14850 - patatin family protein, at 1,086,628 to 1,087,482
_RS14850
HMPREF1058_RS14845: HMPREF1058_RS14845 - aminopeptidase P family protein, at 1,087,812 to 1,089,203
_RS14845
HMPREF1058_RS14840: HMPREF1058_RS14840 - aminopeptidase, at 1,089,232 to 1,090,443
_RS14840
Position (kb) 1087
1088
1089
1090 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1086.868 kb on - strand, within HMPREF1058_RS14850 at 1086.885 kb on + strand, within HMPREF1058_RS14850 at 1087.016 kb on - strand, within HMPREF1058_RS14850 at 1087.019 kb on + strand, within HMPREF1058_RS14850 at 1087.020 kb on - strand, within HMPREF1058_RS14850 at 1087.020 kb on - strand, within HMPREF1058_RS14850 at 1087.020 kb on - strand, within HMPREF1058_RS14850 at 1087.024 kb on + strand, within HMPREF1058_RS14850 at 1087.025 kb on - strand, within HMPREF1058_RS14850 at 1087.060 kb on - strand, within HMPREF1058_RS14850 at 1087.060 kb on - strand, within HMPREF1058_RS14850 at 1087.074 kb on + strand, within HMPREF1058_RS14850 at 1087.103 kb on + strand, within HMPREF1058_RS14850 at 1087.128 kb on + strand, within HMPREF1058_RS14850 at 1087.174 kb on - strand, within HMPREF1058_RS14850 at 1087.176 kb on - strand, within HMPREF1058_RS14850 at 1087.181 kb on + strand, within HMPREF1058_RS14850 at 1087.258 kb on + strand, within HMPREF1058_RS14850 at 1087.312 kb on - strand, within HMPREF1058_RS14850 at 1087.329 kb on + strand, within HMPREF1058_RS14850 at 1087.331 kb on + strand, within HMPREF1058_RS14850 at 1087.331 kb on + strand, within HMPREF1058_RS14850 at 1087.332 kb on - strand, within HMPREF1058_RS14850 at 1087.401 kb on + strand at 1087.401 kb on + strand at 1087.402 kb on - strand at 1087.402 kb on - strand at 1087.402 kb on - strand at 1087.403 kb on + strand at 1087.404 kb on - strand at 1087.437 kb on + strand at 1087.573 kb on - strand at 1087.597 kb on - strand at 1087.622 kb on - strand at 1087.626 kb on + strand at 1087.757 kb on - strand at 1087.761 kb on - strand at 1087.764 kb on - strand at 1087.875 kb on - strand at 1087.883 kb on + strand at 1087.888 kb on + strand at 1087.889 kb on - strand at 1087.889 kb on - strand at 1087.895 kb on + strand at 1087.929 kb on + strand at 1087.932 kb on - strand at 1087.987 kb on - strand, within HMPREF1058_RS14845 at 1087.996 kb on + strand, within HMPREF1058_RS14845 at 1087.996 kb on + strand, within HMPREF1058_RS14845 at 1087.999 kb on + strand, within HMPREF1058_RS14845 at 1088.000 kb on - strand, within HMPREF1058_RS14845 at 1088.003 kb on + strand, within HMPREF1058_RS14845 at 1088.004 kb on - strand, within HMPREF1058_RS14845 at 1088.005 kb on + strand, within HMPREF1058_RS14845 at 1088.006 kb on - strand, within HMPREF1058_RS14845 at 1088.023 kb on - strand, within HMPREF1058_RS14845 at 1088.041 kb on + strand, within HMPREF1058_RS14845 at 1088.045 kb on + strand, within HMPREF1058_RS14845 at 1088.104 kb on + strand, within HMPREF1058_RS14845 at 1088.105 kb on - strand, within HMPREF1058_RS14845 at 1088.172 kb on - strand, within HMPREF1058_RS14845 at 1088.210 kb on + strand, within HMPREF1058_RS14845 at 1088.251 kb on + strand, within HMPREF1058_RS14845 at 1088.251 kb on + strand, within HMPREF1058_RS14845 at 1088.262 kb on + strand, within HMPREF1058_RS14845 at 1088.263 kb on - strand, within HMPREF1058_RS14845 at 1088.300 kb on - strand, within HMPREF1058_RS14845 at 1088.386 kb on + strand, within HMPREF1058_RS14845 at 1088.390 kb on + strand, within HMPREF1058_RS14845 at 1088.390 kb on + strand, within HMPREF1058_RS14845 at 1088.412 kb on + strand, within HMPREF1058_RS14845 at 1088.412 kb on + strand, within HMPREF1058_RS14845 at 1088.412 kb on + strand, within HMPREF1058_RS14845 at 1088.412 kb on + strand, within HMPREF1058_RS14845 at 1088.413 kb on - strand, within HMPREF1058_RS14845 at 1088.413 kb on - strand, within HMPREF1058_RS14845 at 1088.501 kb on - strand, within HMPREF1058_RS14845 at 1088.501 kb on - strand, within HMPREF1058_RS14845 at 1088.505 kb on - strand, within HMPREF1058_RS14845 at 1088.522 kb on + strand, within HMPREF1058_RS14845 at 1088.523 kb on - strand, within HMPREF1058_RS14845 at 1088.523 kb on - strand, within HMPREF1058_RS14845 at 1088.523 kb on - strand, within HMPREF1058_RS14845 at 1088.523 kb on - strand, within HMPREF1058_RS14845 at 1088.523 kb on - strand, within HMPREF1058_RS14845 at 1088.525 kb on - strand, within HMPREF1058_RS14845 at 1088.525 kb on - strand, within HMPREF1058_RS14845 at 1088.525 kb on - strand, within HMPREF1058_RS14845 at 1088.528 kb on - strand, within HMPREF1058_RS14845 at 1088.581 kb on - strand, within HMPREF1058_RS14845 at 1088.646 kb on + strand, within HMPREF1058_RS14845 at 1088.646 kb on + strand, within HMPREF1058_RS14845 at 1088.646 kb on + strand, within HMPREF1058_RS14845 at 1088.646 kb on + strand, within HMPREF1058_RS14845 at 1088.687 kb on + strand, within HMPREF1058_RS14845 at 1088.706 kb on + strand, within HMPREF1058_RS14845 at 1088.707 kb on - strand, within HMPREF1058_RS14845 at 1088.707 kb on - strand, within HMPREF1058_RS14845 at 1088.707 kb on - strand, within HMPREF1058_RS14845 at 1088.707 kb on - strand, within HMPREF1058_RS14845 at 1088.707 kb on - strand, within HMPREF1058_RS14845 at 1088.716 kb on + strand, within HMPREF1058_RS14845 at 1088.752 kb on + strand, within HMPREF1058_RS14845 at 1088.834 kb on - strand, within HMPREF1058_RS14845 at 1088.858 kb on - strand, within HMPREF1058_RS14845 at 1088.858 kb on - strand, within HMPREF1058_RS14845 at 1089.188 kb on + strand at 1089.206 kb on + strand at 1089.207 kb on - strand at 1089.244 kb on - strand at 1089.274 kb on - strand at 1089.274 kb on - strand at 1089.275 kb on + strand at 1089.276 kb on - strand at 1089.337 kb on - strand at 1089.357 kb on + strand, within HMPREF1058_RS14840 at 1089.388 kb on - strand, within HMPREF1058_RS14840 at 1089.401 kb on - strand, within HMPREF1058_RS14840 at 1089.432 kb on - strand, within HMPREF1058_RS14840 at 1089.515 kb on + strand, within HMPREF1058_RS14840 at 1089.560 kb on - strand, within HMPREF1058_RS14840 at 1089.629 kb on - strand, within HMPREF1058_RS14840 at 1089.629 kb on - strand, within HMPREF1058_RS14840 at 1089.636 kb on + strand, within HMPREF1058_RS14840 at 1089.636 kb on + strand, within HMPREF1058_RS14840 at 1089.641 kb on + strand, within HMPREF1058_RS14840 at 1089.641 kb on + strand, within HMPREF1058_RS14840 at 1089.681 kb on - strand, within HMPREF1058_RS14840 at 1089.727 kb on - strand, within HMPREF1058_RS14840 at 1089.735 kb on + strand, within HMPREF1058_RS14840 at 1089.778 kb on + strand, within HMPREF1058_RS14840 at 1089.778 kb on + strand, within HMPREF1058_RS14840 at 1089.778 kb on + strand, within HMPREF1058_RS14840 at 1089.779 kb on - strand, within HMPREF1058_RS14840 at 1089.779 kb on - strand, within HMPREF1058_RS14840 at 1089.779 kb on - strand, within HMPREF1058_RS14840 at 1089.808 kb on + strand, within HMPREF1058_RS14840 at 1089.811 kb on - strand, within HMPREF1058_RS14840 at 1089.823 kb on + strand, within HMPREF1058_RS14840 at 1089.907 kb on + strand, within HMPREF1058_RS14840 at 1089.958 kb on + strand, within HMPREF1058_RS14840 at 1089.958 kb on + strand, within HMPREF1058_RS14840 at 1089.958 kb on + strand, within HMPREF1058_RS14840 at 1090.057 kb on - strand, within HMPREF1058_RS14840 at 1090.070 kb on + strand, within HMPREF1058_RS14840 at 1090.106 kb on + strand, within HMPREF1058_RS14840 at 1090.191 kb on + strand, within HMPREF1058_RS14840 at 1090.191 kb on + strand, within HMPREF1058_RS14840
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 1,086,868 - HMPREF1058_RS14850 0.28 +0.5 1,086,885 + HMPREF1058_RS14850 0.30 -2.7 1,087,016 - HMPREF1058_RS14850 0.45 -0.7 1,087,019 + HMPREF1058_RS14850 0.46 +1.4 1,087,020 - HMPREF1058_RS14850 0.46 -2.1 1,087,020 - HMPREF1058_RS14850 0.46 -1.6 1,087,020 - HMPREF1058_RS14850 0.46 -0.5 1,087,024 + HMPREF1058_RS14850 0.46 +0.4 1,087,025 - HMPREF1058_RS14850 0.46 +0.7 1,087,060 - HMPREF1058_RS14850 0.51 +0.3 1,087,060 - HMPREF1058_RS14850 0.51 +0.6 1,087,074 + HMPREF1058_RS14850 0.52 +1.6 1,087,103 + HMPREF1058_RS14850 0.56 -0.2 1,087,128 + HMPREF1058_RS14850 0.58 -1.3 1,087,174 - HMPREF1058_RS14850 0.64 +0.9 1,087,176 - HMPREF1058_RS14850 0.64 +1.6 1,087,181 + HMPREF1058_RS14850 0.65 +0.8 1,087,258 + HMPREF1058_RS14850 0.74 +0.9 1,087,312 - HMPREF1058_RS14850 0.80 -1.1 1,087,329 + HMPREF1058_RS14850 0.82 -0.0 1,087,331 + HMPREF1058_RS14850 0.82 -0.6 1,087,331 + HMPREF1058_RS14850 0.82 +1.0 1,087,332 - HMPREF1058_RS14850 0.82 +1.5 1,087,401 + +2.0 1,087,401 + +2.4 1,087,402 - -0.1 1,087,402 - -2.0 1,087,402 - +1.0 1,087,403 + +2.0 1,087,404 - +1.1 1,087,437 + -1.1 1,087,573 - -3.3 1,087,597 - -2.6 1,087,622 - -0.7 1,087,626 + +0.2 1,087,757 - -1.5 1,087,761 - -1.7 1,087,764 - -2.7 1,087,875 - -0.1 1,087,883 + -0.1 1,087,888 + +0.2 1,087,889 - -1.1 1,087,889 - -0.1 1,087,895 + -0.1 1,087,929 + +1.4 1,087,932 - -3.3 1,087,987 - HMPREF1058_RS14845 0.13 -1.7 1,087,996 + HMPREF1058_RS14845 0.13 +0.2 1,087,996 + HMPREF1058_RS14845 0.13 +0.1 1,087,999 + HMPREF1058_RS14845 0.13 -1.5 1,088,000 - HMPREF1058_RS14845 0.14 -2.5 1,088,003 + HMPREF1058_RS14845 0.14 -2.5 1,088,004 - HMPREF1058_RS14845 0.14 -2.0 1,088,005 + HMPREF1058_RS14845 0.14 -2.7 1,088,006 - HMPREF1058_RS14845 0.14 -2.1 1,088,023 - HMPREF1058_RS14845 0.15 -3.1 1,088,041 + HMPREF1058_RS14845 0.16 -3.1 1,088,045 + HMPREF1058_RS14845 0.17 -1.4 1,088,104 + HMPREF1058_RS14845 0.21 -0.2 1,088,105 - HMPREF1058_RS14845 0.21 -1.5 1,088,172 - HMPREF1058_RS14845 0.26 -0.1 1,088,210 + HMPREF1058_RS14845 0.29 -1.9 1,088,251 + HMPREF1058_RS14845 0.32 -1.5 1,088,251 + HMPREF1058_RS14845 0.32 -1.4 1,088,262 + HMPREF1058_RS14845 0.32 -1.0 1,088,263 - HMPREF1058_RS14845 0.32 -3.3 1,088,300 - HMPREF1058_RS14845 0.35 -0.1 1,088,386 + HMPREF1058_RS14845 0.41 -1.1 1,088,390 + HMPREF1058_RS14845 0.42 -4.3 1,088,390 + HMPREF1058_RS14845 0.42 -1.1 1,088,412 + HMPREF1058_RS14845 0.43 -0.9 1,088,412 + HMPREF1058_RS14845 0.43 -1.1 1,088,412 + HMPREF1058_RS14845 0.43 -0.4 1,088,412 + HMPREF1058_RS14845 0.43 -0.1 1,088,413 - HMPREF1058_RS14845 0.43 +0.9 1,088,413 - HMPREF1058_RS14845 0.43 -2.1 1,088,501 - HMPREF1058_RS14845 0.49 -0.7 1,088,501 - HMPREF1058_RS14845 0.49 -2.3 1,088,505 - HMPREF1058_RS14845 0.50 +1.7 1,088,522 + HMPREF1058_RS14845 0.51 -1.4 1,088,523 - HMPREF1058_RS14845 0.51 +0.2 1,088,523 - HMPREF1058_RS14845 0.51 +0.3 1,088,523 - HMPREF1058_RS14845 0.51 -1.1 1,088,523 - HMPREF1058_RS14845 0.51 -0.9 1,088,523 - HMPREF1058_RS14845 0.51 -3.7 1,088,525 - HMPREF1058_RS14845 0.51 -2.7 1,088,525 - HMPREF1058_RS14845 0.51 -1.7 1,088,525 - HMPREF1058_RS14845 0.51 -0.8 1,088,528 - HMPREF1058_RS14845 0.51 -2.5 1,088,581 - HMPREF1058_RS14845 0.55 -1.7 1,088,646 + HMPREF1058_RS14845 0.60 -1.3 1,088,646 + HMPREF1058_RS14845 0.60 +0.3 1,088,646 + HMPREF1058_RS14845 0.60 -0.6 1,088,646 + HMPREF1058_RS14845 0.60 -1.1 1,088,687 + HMPREF1058_RS14845 0.63 +0.1 1,088,706 + HMPREF1058_RS14845 0.64 -0.6 1,088,707 - HMPREF1058_RS14845 0.64 -3.9 1,088,707 - HMPREF1058_RS14845 0.64 -1.1 1,088,707 - HMPREF1058_RS14845 0.64 -1.1 1,088,707 - HMPREF1058_RS14845 0.64 -2.5 1,088,707 - HMPREF1058_RS14845 0.64 -0.1 1,088,716 + HMPREF1058_RS14845 0.65 +1.0 1,088,752 + HMPREF1058_RS14845 0.68 +0.1 1,088,834 - HMPREF1058_RS14845 0.73 -0.1 1,088,858 - HMPREF1058_RS14845 0.75 -1.6 1,088,858 - HMPREF1058_RS14845 0.75 -2.1 1,089,188 + -0.5 1,089,206 + -1.9 1,089,207 - -0.6 1,089,244 - +0.1 1,089,274 - +0.8 1,089,274 - -2.1 1,089,275 + -0.1 1,089,276 - -1.5 1,089,337 - -1.7 1,089,357 + HMPREF1058_RS14840 0.10 +1.4 1,089,388 - HMPREF1058_RS14840 0.13 -0.9 1,089,401 - HMPREF1058_RS14840 0.14 -0.3 1,089,432 - HMPREF1058_RS14840 0.17 -0.0 1,089,515 + HMPREF1058_RS14840 0.23 -1.7 1,089,560 - HMPREF1058_RS14840 0.27 -0.1 1,089,629 - HMPREF1058_RS14840 0.33 -0.7 1,089,629 - HMPREF1058_RS14840 0.33 -1.7 1,089,636 + HMPREF1058_RS14840 0.33 +0.1 1,089,636 + HMPREF1058_RS14840 0.33 -0.1 1,089,641 + HMPREF1058_RS14840 0.34 +2.3 1,089,641 + HMPREF1058_RS14840 0.34 -0.5 1,089,681 - HMPREF1058_RS14840 0.37 -0.5 1,089,727 - HMPREF1058_RS14840 0.41 -2.5 1,089,735 + HMPREF1058_RS14840 0.42 -1.4 1,089,778 + HMPREF1058_RS14840 0.45 +1.1 1,089,778 + HMPREF1058_RS14840 0.45 +0.5 1,089,778 + HMPREF1058_RS14840 0.45 -1.1 1,089,779 - HMPREF1058_RS14840 0.45 -0.5 1,089,779 - HMPREF1058_RS14840 0.45 +0.3 1,089,779 - HMPREF1058_RS14840 0.45 -1.7 1,089,808 + HMPREF1058_RS14840 0.48 -4.3 1,089,811 - HMPREF1058_RS14840 0.48 +2.2 1,089,823 + HMPREF1058_RS14840 0.49 -1.1 1,089,907 + HMPREF1058_RS14840 0.56 -0.9 1,089,958 + HMPREF1058_RS14840 0.60 +0.2 1,089,958 + HMPREF1058_RS14840 0.60 +0.9 1,089,958 + HMPREF1058_RS14840 0.60 -2.5 1,090,057 - HMPREF1058_RS14840 0.68 -2.1 1,090,070 + HMPREF1058_RS14840 0.69 -0.4 1,090,106 + HMPREF1058_RS14840 0.72 +1.4 1,090,191 + HMPREF1058_RS14840 0.79 -0.6 1,090,191 + HMPREF1058_RS14840 0.79 -1.2
Or see this region's nucleotide sequence