Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13450

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
1,484,309	+		HMPREF1058_RS13455	0.55	+0.3
1,484,310	-		HMPREF1058_RS13455	0.55	-1.1
1,484,367	+		HMPREF1058_RS13455	0.57	-1.3
1,484,385	+		HMPREF1058_RS13455	0.58	-1.4
1,484,467	+		HMPREF1058_RS13455	0.62	+1.7
1,484,468	-		HMPREF1058_RS13455	0.62	-0.3
1,484,508	-		HMPREF1058_RS13455	0.64	+0.7
1,484,622	-		HMPREF1058_RS13455	0.69	+1.0
1,484,635	+		HMPREF1058_RS13455	0.70	+1.3
1,484,725	-		HMPREF1058_RS13455	0.74	-1.8
1,484,729	+		HMPREF1058_RS13455	0.74	+0.7
1,484,733	+		HMPREF1058_RS13455	0.75	-0.0
1,484,776	+		HMPREF1058_RS13455	0.77	-1.6
1,484,797	+		HMPREF1058_RS13455	0.78	-0.7
1,484,797	+		HMPREF1058_RS13455	0.78	+2.7
1,484,891	+		HMPREF1058_RS13455	0.82	+1.6
1,484,909	-		HMPREF1058_RS13455	0.83	+0.2
1,484,912	-		HMPREF1058_RS13455	0.83	-1.4
1,484,912	-		HMPREF1058_RS13455	0.83	-0.8
1,484,926	-		HMPREF1058_RS13455	0.84	-0.4
1,484,943	-		HMPREF1058_RS13455	0.85	-0.5
1,484,954	+				-1.3
1,484,954	+		HMPREF1058_RS13455	0.85	+1.7
1,485,004	+		HMPREF1058_RS13455	0.87	-1.0
1,485,111	-				+1.2
1,485,116	-				+1.3
1,485,116	-				+1.8
1,485,116	-				-1.0
1,485,118	-				-0.3
1,485,152	+				+0.3
1,485,173	-				+3.8
1,485,176	+				+0.5
1,485,195	+				-1.8
1,485,278	+				+1.3
1,485,278	+				-0.3
1,485,289	-				-0.3
1,485,307	-				+0.2
1,485,393	+				+1.9
1,485,520	+				-0.4
1,485,527	+				+0.6
1,485,528	-				-0.4
1,485,548	+				-0.6
1,485,549	-				-3.3
1,485,563	-				-0.8
1,485,637	+		HMPREF1058_RS13450	0.10	-2.3
1,485,640	+		HMPREF1058_RS13450	0.10	+1.7
1,485,671	+		HMPREF1058_RS13450	0.11	+0.2
1,485,672	-		HMPREF1058_RS13450	0.11	+0.3
1,485,672	-		HMPREF1058_RS13450	0.11	-0.5
1,485,676	+		HMPREF1058_RS13450	0.12	-2.2
1,485,676	+		HMPREF1058_RS13450	0.12	+1.2
1,485,677	-		HMPREF1058_RS13450	0.12	+0.3
1,485,678	+				-1.3
1,485,685	+		HMPREF1058_RS13450	0.12	-0.3
1,485,695	+		HMPREF1058_RS13450	0.12	-0.3
1,485,695	+		HMPREF1058_RS13450	0.12	-1.3
1,485,824	-		HMPREF1058_RS13450	0.16	+0.7
1,485,899	-				-0.3
1,485,908	+		HMPREF1058_RS13450	0.19	-1.0
1,485,930	+		HMPREF1058_RS13450	0.19	+1.9
1,485,933	+		HMPREF1058_RS13450	0.20	-0.7
1,485,935	+		HMPREF1058_RS13450	0.20	-2.4
1,486,124	-		HMPREF1058_RS13450	0.26	+1.7
1,486,129	-				-1.3
1,486,129	-		HMPREF1058_RS13450	0.26	-1.3
1,486,163	-		HMPREF1058_RS13450	0.27	+0.2
1,486,219	+		HMPREF1058_RS13450	0.29	+1.1
1,486,318	-		HMPREF1058_RS13450	0.32	-0.5
1,486,374	+		HMPREF1058_RS13450	0.33	-0.3
1,486,384	+		HMPREF1058_RS13450	0.34	+4.0
1,486,430	-		HMPREF1058_RS13450	0.35	-2.3
1,486,470	-		HMPREF1058_RS13450	0.36	-1.8
1,486,470	-		HMPREF1058_RS13450	0.36	-2.7
1,486,473	-		HMPREF1058_RS13450	0.36	-1.5
1,486,473	-		HMPREF1058_RS13450	0.36	-1.7
1,486,474	+		HMPREF1058_RS13450	0.37	-1.3
1,486,475	-		HMPREF1058_RS13450	0.37	-1.8
1,486,475	-		HMPREF1058_RS13450	0.37	-0.4
1,486,541	-		HMPREF1058_RS13450	0.39	+0.6
1,486,553	+		HMPREF1058_RS13450	0.39	-0.9
1,486,593	-		HMPREF1058_RS13450	0.40	-2.1
1,486,607	-		HMPREF1058_RS13450	0.41	-0.5
1,486,630	+		HMPREF1058_RS13450	0.41	+2.9
1,486,633	-		HMPREF1058_RS13450	0.42	+2.3
1,486,633	-		HMPREF1058_RS13450	0.42	-2.3
1,486,633	-		HMPREF1058_RS13450	0.42	+0.7
1,486,700	+		HMPREF1058_RS13450	0.44	+4.8
1,486,701	-		HMPREF1058_RS13450	0.44	+0.2
1,486,701	-		HMPREF1058_RS13450	0.44	-0.6
1,486,709	-		HMPREF1058_RS13450	0.44	-1.6
1,486,741	+		HMPREF1058_RS13450	0.45	-1.1
1,486,796	+		HMPREF1058_RS13450	0.47	+0.3
1,486,849	+		HMPREF1058_RS13450	0.48	+0.8
1,486,850	-		HMPREF1058_RS13450	0.48	-0.5
1,486,925	+		HMPREF1058_RS13450	0.51	+1.3
1,486,930	+		HMPREF1058_RS13450	0.51	+0.1
1,486,937	-		HMPREF1058_RS13450	0.51	-1.3
1,486,950	-		HMPREF1058_RS13450	0.51	+0.5
1,486,950	-		HMPREF1058_RS13450	0.51	-1.3
1,486,954	-		HMPREF1058_RS13450	0.52	-0.8
1,487,036	+		HMPREF1058_RS13450	0.54	+0.6
1,487,048	-		HMPREF1058_RS13450	0.55	-0.4
1,487,069	-		HMPREF1058_RS13450	0.55	+0.2
1,487,099	-		HMPREF1058_RS13450	0.56	+3.2
1,487,116	+		HMPREF1058_RS13450	0.57	-0.4
1,487,121	+		HMPREF1058_RS13450	0.57	+0.4
1,487,122	-		HMPREF1058_RS13450	0.57	-1.3
1,487,125	+		HMPREF1058_RS13450	0.57	+1.7
1,487,211	+		HMPREF1058_RS13450	0.60	-0.3
1,487,234	-		HMPREF1058_RS13450	0.60	+0.2
1,487,257	+		HMPREF1058_RS13450	0.61	+0.6
1,487,301	-		HMPREF1058_RS13450	0.62	-1.3
1,487,326	+		HMPREF1058_RS13450	0.63	-2.5
1,487,326	+		HMPREF1058_RS13450	0.63	-0.3
1,487,410	-		HMPREF1058_RS13450	0.66	+2.3
1,487,449	+		HMPREF1058_RS13450	0.67	+0.7
1,487,449	+		HMPREF1058_RS13450	0.67	+3.0
1,487,449	+		HMPREF1058_RS13450	0.67	+1.7
1,487,450	-		HMPREF1058_RS13450	0.67	+2.2
1,487,481	+		HMPREF1058_RS13450	0.68	-1.3
1,487,482	-		HMPREF1058_RS13450	0.68	+0.3
1,487,482	-		HMPREF1058_RS13450	0.68	-0.8
1,487,596	+		HMPREF1058_RS13450	0.72	+3.7
1,487,696	-		HMPREF1058_RS13450	0.75	-0.7
1,487,743	-		HMPREF1058_RS13450	0.76	+0.4
1,487,810	-		HMPREF1058_RS13450	0.78	-1.8
1,487,968	+		HMPREF1058_RS13450	0.83	+2.3
1,488,052	+		HMPREF1058_RS13450	0.86	+0.7
1,488,086	+		HMPREF1058_RS13450	0.87	+0.6
1,488,188	-				-1.1
1,488,302	-				-1.1
1,488,304	+				+0.1
1,488,304	+				+1.6
1,488,304	+				-1.8
1,488,305	-				-0.5
1,488,305	-				-2.1
1,488,305	-				-0.8
1,488,305	-				+1.0
1,488,332	+				-0.7
1,488,463	+				-1.3
1,488,473	-				+0.5
1,488,583	-				-1.3
1,488,592	-				-2.6
1,488,592	-				-2.4
1,488,593	+				+2.1
1,488,593	+				+2.0
1,488,638	+				-1.7
1,488,640	+				-0.5
1,488,641	-				-3.4
1,488,641	-				-2.5
1,488,693	+				+2.8
1,488,693	+				+0.3
1,488,747	+				+3.4
1,488,752	+				+1.2
1,488,793	-				-2.6
1,488,796	+				+0.2
1,488,797	-				-2.1
1,488,809	+				+0.2
1,488,821	+				-0.5
1,488,829	+				+0.6
1,488,847	-				-2.7
1,488,869	+				-1.8
1,488,894	-				-2.3
1,488,894	-				-2.3
1,488,904	+				+1.6
1,488,934	-				-1.4
1,488,987	+				+2.7
1,488,990	+				-1.2
1,488,991	-				-0.1
1,489,097	+				-2.3
1,489,098	-				+1.3
1,489,133	+				+0.9
1,489,134	-				-0.8
1,489,153	+				-0.4
1,489,154	-				+0.4
1,489,154	-				-2.3
1,489,154	-				+1.1
1,489,154	-				-0.3
1,489,281	-		HMPREF1058_RS13445	0.11	-0.8
1,489,372	-		HMPREF1058_RS13445	0.14	-1.3
1,489,372	-		HMPREF1058_RS13445	0.14	+0.2
1,489,461	+		HMPREF1058_RS13445	0.17	-1.5
1,489,461	+		HMPREF1058_RS13445	0.17	+1.1
1,489,462	-		HMPREF1058_RS13445	0.17	+2.3
1,489,474	-		HMPREF1058_RS13445	0.18	-1.3