Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13030

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
1,608,862	+		HMPREF1058_RS13035	0.52	-1.8
1,608,865	+		HMPREF1058_RS13035	0.52	-2.8
1,608,867	+		HMPREF1058_RS13035	0.52	-0.8
1,608,884	+		HMPREF1058_RS13035	0.53	+2.7
1,608,968	+		HMPREF1058_RS13035	0.57	+2.4
1,608,969	-		HMPREF1058_RS13035	0.57	-3.4
1,609,238	+		HMPREF1058_RS13035	0.70	+2.7
1,609,239	-		HMPREF1058_RS13035	0.70	-0.3
1,609,239	-		HMPREF1058_RS13035	0.70	-0.3
1,609,239	-		HMPREF1058_RS13035	0.70	+1.0
1,609,319	-		HMPREF1058_RS13035	0.74	+0.7
1,609,387	+		HMPREF1058_RS13035	0.78	-0.3
1,609,392	+		HMPREF1058_RS13035	0.78	+1.0
1,609,397	-		HMPREF1058_RS13035	0.78	+0.0
1,609,426	+		HMPREF1058_RS13035	0.80	+0.0
1,609,427	-		HMPREF1058_RS13035	0.80	-0.7
1,609,428	+		HMPREF1058_RS13035	0.80	+0.7
1,609,429	-		HMPREF1058_RS13035	0.80	+0.2
1,609,429	-		HMPREF1058_RS13035	0.80	+0.3
1,609,462	+		HMPREF1058_RS13035	0.81	+1.4
1,609,505	-		HMPREF1058_RS13035	0.83	-0.3
1,609,508	-		HMPREF1058_RS13035	0.84	+1.2
1,609,586	-		HMPREF1058_RS13035	0.87	+0.3
1,609,618	+		HMPREF1058_RS13035	0.89	+2.7
1,609,619	-		HMPREF1058_RS13035	0.89	+2.3
1,609,689	+				+1.4
1,609,689	+				+0.9
1,609,689	+				-0.8
1,609,689	+				-0.3
1,609,829	+				-0.5
1,609,888	-				+1.4
1,609,947	+				+1.3
1,609,948	-				+0.5
1,609,952	+				+2.2
1,609,953	-				+0.4
1,609,994	-				+0.6
1,609,995	+				+1.7
1,609,995	+				+1.0
1,610,012	+				+1.3
1,610,013	-				+4.6
1,610,045	+				+1.6
1,610,046	-				+2.1
1,610,121	-				-0.6
1,610,260	+		HMPREF1058_RS13030	0.13	+1.0
1,610,309	+		HMPREF1058_RS13030	0.14	+0.8
1,610,310	-		HMPREF1058_RS13030	0.14	-0.3
1,610,330	-		HMPREF1058_RS13030	0.15	+2.5
1,610,372	+		HMPREF1058_RS13030	0.16	+1.2
1,610,455	+		HMPREF1058_RS13030	0.19	+2.4
1,610,455	+		HMPREF1058_RS13030	0.19	+0.5
1,610,456	-		HMPREF1058_RS13030	0.19	+2.0
1,610,459	+		HMPREF1058_RS13030	0.19	-0.3
1,610,459	+		HMPREF1058_RS13030	0.19	-0.0
1,610,460	-		HMPREF1058_RS13030	0.19	+1.1
1,610,558	+		HMPREF1058_RS13030	0.22	+1.6
1,610,558	+		HMPREF1058_RS13030	0.22	+1.9
1,610,558	+		HMPREF1058_RS13030	0.22	+1.7
1,610,558	+		HMPREF1058_RS13030	0.22	+3.3
1,610,559	-		HMPREF1058_RS13030	0.22	+0.8
1,610,559	-		HMPREF1058_RS13030	0.22	+0.2
1,610,559	-				+3.7
1,610,594	-				+2.1
1,610,670	-		HMPREF1058_RS13030	0.25	+3.6
1,610,707	-		HMPREF1058_RS13030	0.27	+1.5
1,610,809	+		HMPREF1058_RS13030	0.30	+0.7
1,610,878	-		HMPREF1058_RS13030	0.32	+1.7
1,610,878	-		HMPREF1058_RS13030	0.32	+1.1
1,610,919	+		HMPREF1058_RS13030	0.33	+0.6
1,610,919	+		HMPREF1058_RS13030	0.33	+1.1
1,610,919	+		HMPREF1058_RS13030	0.33	+1.8
1,610,919	+		HMPREF1058_RS13030	0.33	+2.1
1,610,919	+		HMPREF1058_RS13030	0.33	+1.2
1,610,920	-		HMPREF1058_RS13030	0.33	-0.3
1,610,920	-		HMPREF1058_RS13030	0.33	+1.3
1,610,920	-		HMPREF1058_RS13030	0.33	-0.1
1,610,920	-		HMPREF1058_RS13030	0.33	+2.0
1,610,993	+		HMPREF1058_RS13030	0.36	+0.6
1,611,032	+		HMPREF1058_RS13030	0.37	-2.3
1,611,032	+		HMPREF1058_RS13030	0.37	+0.9
1,611,082	-		HMPREF1058_RS13030	0.38	-1.0
1,611,215	+		HMPREF1058_RS13030	0.42	+0.7
1,611,215	+		HMPREF1058_RS13030	0.42	+1.3
1,611,216	-		HMPREF1058_RS13030	0.42	+2.3
1,611,216	-		HMPREF1058_RS13030	0.42	+1.7
1,611,227	+		HMPREF1058_RS13030	0.43	+1.5
1,611,278	+		HMPREF1058_RS13030	0.44	+2.0
1,611,321	-		HMPREF1058_RS13030	0.46	+0.8
1,611,376	+		HMPREF1058_RS13030	0.47	+1.8
1,611,377	-		HMPREF1058_RS13030	0.47	+1.7
1,611,377	-		HMPREF1058_RS13030	0.47	+1.3
1,611,397	-		HMPREF1058_RS13030	0.48	+0.6
1,611,458	+		HMPREF1058_RS13030	0.50	+1.4
1,611,462	-		HMPREF1058_RS13030	0.50	+2.8
1,611,462	-		HMPREF1058_RS13030	0.50	+0.2
1,611,462	-		HMPREF1058_RS13030	0.50	+1.0
1,611,462	-		HMPREF1058_RS13030	0.50	+2.1
1,611,514	+		HMPREF1058_RS13030	0.52	+1.7
1,611,515	-		HMPREF1058_RS13030	0.52	+3.2
1,611,521	+		HMPREF1058_RS13030	0.52	+2.7
1,611,522	-		HMPREF1058_RS13030	0.52	+0.3
1,611,611	+		HMPREF1058_RS13030	0.55	+2.0
1,611,612	-		HMPREF1058_RS13030	0.55	+1.1
1,611,635	+		HMPREF1058_RS13030	0.55	+1.7
1,611,733	-		HMPREF1058_RS13030	0.58	+0.3
1,611,873	+		HMPREF1058_RS13030	0.63	+1.3
1,611,915	+		HMPREF1058_RS13030	0.64	-0.7
1,611,952	-		HMPREF1058_RS13030	0.65	+2.7
1,612,148	+		HMPREF1058_RS13030	0.71	+4.5
1,612,166	+		HMPREF1058_RS13030	0.72	+5.1
1,612,191	-		HMPREF1058_RS13030	0.73	+2.3
1,612,235	-		HMPREF1058_RS13030	0.74	+1.0
1,612,235	-		HMPREF1058_RS13030	0.74	+3.3
1,612,271	+		HMPREF1058_RS13030	0.75	+1.0
1,612,271	+		HMPREF1058_RS13030	0.75	+0.0
1,612,271	+		HMPREF1058_RS13030	0.75	+3.8
1,612,272	-		HMPREF1058_RS13030	0.75	+0.6
1,612,272	-		HMPREF1058_RS13030	0.75	+5.3
1,612,275	+		HMPREF1058_RS13030	0.75	+1.5
1,612,275	+				+0.7
1,612,275	+		HMPREF1058_RS13030	0.75	+2.0
1,612,275	+		HMPREF1058_RS13030	0.75	+2.3
1,612,276	-		HMPREF1058_RS13030	0.75	-0.6
1,612,276	-		HMPREF1058_RS13030	0.75	+1.1
1,612,306	+		HMPREF1058_RS13030	0.76	+1.7
1,612,306	+		HMPREF1058_RS13030	0.76	+3.5
1,612,311	-		HMPREF1058_RS13030	0.76	+1.8
1,612,382	-		HMPREF1058_RS13030	0.79	+0.7
1,612,382	-		HMPREF1058_RS13030	0.79	+1.7
1,612,382	-		HMPREF1058_RS13030	0.79	-0.1
1,612,384	-		HMPREF1058_RS13030	0.79	+2.2
1,612,384	-		HMPREF1058_RS13030	0.79	+2.5
1,612,384	-		HMPREF1058_RS13030	0.79	+2.6
1,612,384	-		HMPREF1058_RS13030	0.79	+4.0
1,612,385	+		HMPREF1058_RS13030	0.79	+1.3
1,612,385	+		HMPREF1058_RS13030	0.79	+2.3
1,612,385	+		HMPREF1058_RS13030	0.79	+1.1
1,612,385	+		HMPREF1058_RS13030	0.79	+2.0
1,612,441	-		HMPREF1058_RS13030	0.80	+2.9
1,612,441	-		HMPREF1058_RS13030	0.80	+1.6
1,612,442	+		HMPREF1058_RS13030	0.80	+1.5
1,612,446	-		HMPREF1058_RS13030	0.81	+0.6
1,612,476	+		HMPREF1058_RS13030	0.81	+1.6
1,612,512	-		HMPREF1058_RS13030	0.83	+1.9
1,612,530	+		HMPREF1058_RS13030	0.83	+0.1
1,612,530	+		HMPREF1058_RS13030	0.83	+1.3
1,612,531	-		HMPREF1058_RS13030	0.83	+2.8
1,612,568	+		HMPREF1058_RS13030	0.84	+1.7
1,612,571	+		HMPREF1058_RS13030	0.84	+1.2
1,612,792	+				+4.3
1,612,797	+				+3.9
1,612,797	+				-0.0
1,612,798	-				+1.9
1,612,798	-				+0.6
1,612,801	+				+1.5
1,612,801	+				+1.4
1,612,801	+				+0.9
1,612,845	-				+2.3
1,612,884	-				+0.6
1,612,947	-				+1.5
1,612,947	-				+3.2
1,612,950	+				+2.0
1,612,950	+				+0.4
1,612,950	+				+3.0
1,612,951	-				+2.3
1,612,951	-				+1.3
1,612,986	+				+0.6
1,612,986	+				+2.9
1,612,987	-				+3.2
1,612,994	-				+2.8
1,613,045	+				+1.1
1,613,045	+				+1.2
1,613,045	+				+1.9
1,613,049	+				+1.3
1,613,105	-				+1.8
1,613,119	-				+1.7
1,613,136	-				-1.0
1,613,146	-				+1.2
1,613,181	-				+3.4
1,613,222	+				-2.0
1,613,222	+				+1.9
1,613,225	+				-0.3
1,613,330	+				+0.2
1,613,349	+				+1.7
1,613,349	+				-1.7
1,613,408	-				-0.3
1,613,408	-				+0.7
1,613,411	-				+1.4
1,613,411	-				-0.3
1,613,411	-				-0.8
1,613,469	-				+0.3
1,613,488	+				+0.2
1,613,489	-				-1.3
1,613,491	-				-0.7
1,613,536	+				+0.0
1,613,591	+				+1.1
1,613,592	-				-0.5
1,613,592	-				+2.5
1,613,594	-				+2.0
1,613,594	-				-0.3
1,613,646	-				+0.2
1,613,646	-				-0.5
1,613,674	-				+3.3
1,613,676	-				+1.9
1,613,699	+				+0.1
1,613,701	+				-0.6
1,613,702	-				-2.8
1,613,706	+				+0.5
1,613,706	+				+0.2
1,613,707	-				-0.4
1,613,715	+				+1.3
1,613,715	+				-0.5
1,613,716	-				+0.2
1,613,725	+				-0.3
1,613,726	-				-0.3
1,613,796	-				+0.6
1,613,804	-				-1.3
1,613,804	-				-2.8
1,613,811	+				+1.0
1,613,812	-				+0.4
1,613,814	+				+2.6
1,613,898	+				-1.3
1,613,899	-				-0.7
1,613,916	+				-1.5
1,613,917	-				+0.3
1,613,921	+				+1.3
1,613,921	+				-1.0
1,613,943	-				+1.7
1,613,955	-				+1.7
1,613,966	-				+2.4
1,613,973	+				+2.9
1,614,072	+		HMPREF1058_RS21605	0.38	+0.2