Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12235 and HMPREF1058_RS12230 are separated by 17 nucleotides HMPREF1058_RS12230 and HMPREF1058_RS12225 are separated by 158 nucleotides HMPREF1058_RS12225 and HMPREF1058_RS0119595 are separated by 367 nucleotides
HMPREF1058_RS12235: HMPREF1058_RS12235 - DUF4981 domain-containing protein, at 166,760 to 169,936
_RS12235
HMPREF1058_RS12230: HMPREF1058_RS12230 - glycoside hydrolase, at 169,954 to 171,888
_RS12230
HMPREF1058_RS12225: HMPREF1058_RS12225 - GNAT family N-acetyltransferase, at 172,047 to 172,469
_RS12225
HMPREF1058_RS0119595: HMPREF1058_RS0119595 - hypothetical protein, at 172,837 to 173,163
_RS0119595
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 169.005 kb on + strand, within HMPREF1058_RS12235 at 169.048 kb on + strand, within HMPREF1058_RS12235 at 169.085 kb on - strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.115 kb on + strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.299 kb on + strand, within HMPREF1058_RS12235 at 169.300 kb on - strand, within HMPREF1058_RS12235 at 169.375 kb on - strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.430 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.455 kb on - strand, within HMPREF1058_RS12235 at 169.533 kb on - strand, within HMPREF1058_RS12235 at 169.564 kb on + strand, within HMPREF1058_RS12235 at 169.565 kb on + strand, within HMPREF1058_RS12235 at 169.603 kb on - strand, within HMPREF1058_RS12235 at 169.707 kb on - strand at 169.807 kb on + strand at 169.808 kb on - strand at 169.810 kb on + strand at 169.827 kb on + strand at 169.827 kb on + strand at 169.935 kb on - strand at 169.995 kb on - strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.082 kb on - strand at 170.082 kb on - strand at 170.086 kb on + strand at 170.086 kb on + strand at 170.087 kb on - strand at 170.087 kb on - strand at 170.250 kb on - strand, within HMPREF1058_RS12230 at 170.255 kb on - strand, within HMPREF1058_RS12230 at 170.276 kb on + strand, within HMPREF1058_RS12230 at 170.316 kb on - strand, within HMPREF1058_RS12230 at 170.318 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.517 kb on - strand, within HMPREF1058_RS12230 at 170.615 kb on - strand, within HMPREF1058_RS12230 at 170.717 kb on - strand, within HMPREF1058_RS12230 at 170.790 kb on + strand, within HMPREF1058_RS12230 at 170.791 kb on - strand, within HMPREF1058_RS12230 at 170.860 kb on + strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.868 kb on - strand, within HMPREF1058_RS12230 at 170.988 kb on - strand, within HMPREF1058_RS12230 at 170.988 kb on - strand, within HMPREF1058_RS12230 at 171.127 kb on + strand, within HMPREF1058_RS12230 at 171.128 kb on - strand, within HMPREF1058_RS12230 at 171.130 kb on + strand, within HMPREF1058_RS12230 at 171.143 kb on - strand, within HMPREF1058_RS12230 at 171.172 kb on - strand, within HMPREF1058_RS12230 at 171.172 kb on - strand, within HMPREF1058_RS12230 at 171.172 kb on - strand, within HMPREF1058_RS12230 at 171.198 kb on + strand, within HMPREF1058_RS12230 at 171.328 kb on + strand, within HMPREF1058_RS12230 at 171.380 kb on + strand, within HMPREF1058_RS12230 at 171.380 kb on + strand, within HMPREF1058_RS12230 at 171.506 kb on - strand, within HMPREF1058_RS12230 at 171.506 kb on - strand, within HMPREF1058_RS12230 at 171.506 kb on - strand, within HMPREF1058_RS12230 at 171.545 kb on + strand, within HMPREF1058_RS12230 at 171.592 kb on + strand, within HMPREF1058_RS12230 at 171.679 kb on + strand, within HMPREF1058_RS12230 at 171.715 kb on - strand at 171.866 kb on + strand at 171.867 kb on - strand at 171.867 kb on - strand at 171.867 kb on - strand at 171.869 kb on - strand at 171.869 kb on - strand at 171.909 kb on + strand at 171.911 kb on + strand at 171.912 kb on - strand at 171.915 kb on + strand at 171.918 kb on + strand at 171.919 kb on - strand at 171.967 kb on + strand at 172.009 kb on + strand at 172.010 kb on - strand at 172.067 kb on + strand at 172.115 kb on + strand, within HMPREF1058_RS12225 at 172.131 kb on - strand, within HMPREF1058_RS12225 at 172.147 kb on + strand, within HMPREF1058_RS12225 at 172.147 kb on + strand, within HMPREF1058_RS12225 at 172.171 kb on + strand, within HMPREF1058_RS12225 at 172.174 kb on - strand, within HMPREF1058_RS12225 at 172.262 kb on - strand, within HMPREF1058_RS12225 at 172.310 kb on + strand, within HMPREF1058_RS12225 at 172.310 kb on + strand, within HMPREF1058_RS12225 at 172.330 kb on + strand, within HMPREF1058_RS12225 at 172.331 kb on - strand, within HMPREF1058_RS12225 at 172.331 kb on - strand, within HMPREF1058_RS12225 at 172.383 kb on - strand, within HMPREF1058_RS12225 at 172.393 kb on + strand, within HMPREF1058_RS12225 at 172.405 kb on + strand, within HMPREF1058_RS12225 at 172.453 kb on + strand at 172.525 kb on - strand at 172.571 kb on + strand at 172.571 kb on + strand at 172.571 kb on + strand at 172.576 kb on + strand at 172.577 kb on - strand at 172.578 kb on + strand at 172.578 kb on + strand at 172.600 kb on + strand at 172.601 kb on - strand at 172.603 kb on - strand at 172.605 kb on - strand at 172.622 kb on + strand at 172.622 kb on + strand at 172.627 kb on + strand at 172.627 kb on + strand at 172.627 kb on + strand at 172.640 kb on - strand at 172.641 kb on + strand at 172.641 kb on + strand at 172.642 kb on - strand at 172.739 kb on + strand at 172.745 kb on + strand at 172.746 kb on - strand at 172.773 kb on - strand at 172.776 kb on + strand at 172.776 kb on + strand at 172.782 kb on + strand at 172.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 169,005 + HMPREF1058_RS12235 0.71 -0.2 169,048 + HMPREF1058_RS12235 0.72 -0.3 169,085 - HMPREF1058_RS12235 0.73 -0.3 169,113 + HMPREF1058_RS12235 0.74 +0.2 169,113 + HMPREF1058_RS12235 0.74 +1.9 169,115 + HMPREF1058_RS12235 0.74 -0.1 169,116 - HMPREF1058_RS12235 0.74 -2.9 169,116 - HMPREF1058_RS12235 0.74 +1.3 169,299 + HMPREF1058_RS12235 0.80 +0.4 169,300 - HMPREF1058_RS12235 0.80 -1.5 169,375 - HMPREF1058_RS12235 0.82 -0.7 169,378 + HMPREF1058_RS12235 0.82 +0.2 169,378 + HMPREF1058_RS12235 0.82 -1.1 169,378 + HMPREF1058_RS12235 0.82 +0.1 169,378 + HMPREF1058_RS12235 0.82 +1.7 169,430 - HMPREF1058_RS12235 0.84 -1.3 169,436 - HMPREF1058_RS12235 0.84 +0.2 169,436 - HMPREF1058_RS12235 0.84 -0.9 169,436 - HMPREF1058_RS12235 0.84 -2.2 169,455 - HMPREF1058_RS12235 0.85 -0.8 169,533 - HMPREF1058_RS12235 0.87 -0.1 169,564 + HMPREF1058_RS12235 0.88 +1.5 169,565 + HMPREF1058_RS12235 0.88 -0.2 169,603 - HMPREF1058_RS12235 0.89 +0.8 169,707 - +0.1 169,807 + +0.1 169,808 - -1.3 169,810 + +0.1 169,827 + +1.0 169,827 + +1.5 169,935 - -1.3 169,995 - -1.3 170,081 + -2.9 170,081 + +0.5 170,081 + -3.3 170,081 + -0.1 170,082 - -2.2 170,082 - -2.8 170,086 + +0.1 170,086 + -1.8 170,087 - -2.0 170,087 - -1.5 170,250 - HMPREF1058_RS12230 0.15 -2.7 170,255 - HMPREF1058_RS12230 0.16 -1.2 170,276 + HMPREF1058_RS12230 0.17 -1.9 170,316 - HMPREF1058_RS12230 0.19 -3.6 170,318 - HMPREF1058_RS12230 0.19 -2.7 170,454 - HMPREF1058_RS12230 0.26 +0.3 170,454 - HMPREF1058_RS12230 0.26 -2.4 170,517 - HMPREF1058_RS12230 0.29 -2.8 170,615 - HMPREF1058_RS12230 0.34 -1.2 170,717 - HMPREF1058_RS12230 0.39 -2.1 170,790 + HMPREF1058_RS12230 0.43 -2.8 170,791 - HMPREF1058_RS12230 0.43 -0.8 170,860 + HMPREF1058_RS12230 0.47 -1.7 170,861 - HMPREF1058_RS12230 0.47 -1.9 170,861 - HMPREF1058_RS12230 0.47 -2.0 170,861 - HMPREF1058_RS12230 0.47 -1.3 170,868 - HMPREF1058_RS12230 0.47 -1.3 170,988 - HMPREF1058_RS12230 0.53 -1.4 170,988 - HMPREF1058_RS12230 0.53 -2.1 171,127 + HMPREF1058_RS12230 0.61 -0.9 171,128 - HMPREF1058_RS12230 0.61 -2.5 171,130 + HMPREF1058_RS12230 0.61 -1.7 171,143 - HMPREF1058_RS12230 0.61 -2.1 171,172 - HMPREF1058_RS12230 0.63 -0.3 171,172 - HMPREF1058_RS12230 0.63 -0.9 171,172 - HMPREF1058_RS12230 0.63 -2.3 171,198 + HMPREF1058_RS12230 0.64 -0.9 171,328 + HMPREF1058_RS12230 0.71 -0.5 171,380 + HMPREF1058_RS12230 0.74 -2.7 171,380 + HMPREF1058_RS12230 0.74 -1.4 171,506 - HMPREF1058_RS12230 0.80 -2.6 171,506 - HMPREF1058_RS12230 0.80 -0.9 171,506 - HMPREF1058_RS12230 0.80 -0.3 171,545 + HMPREF1058_RS12230 0.82 -0.2 171,592 + HMPREF1058_RS12230 0.85 -0.9 171,679 + HMPREF1058_RS12230 0.89 -1.7 171,715 - -3.6 171,866 + -0.3 171,867 - +0.4 171,867 - -2.9 171,867 - +1.2 171,869 - -0.9 171,869 - -3.8 171,909 + +0.2 171,911 + +0.1 171,912 - +1.3 171,915 + -2.4 171,918 + +0.7 171,919 - -2.1 171,967 + -0.3 172,009 + +0.3 172,010 - +0.2 172,067 + +1.6 172,115 + HMPREF1058_RS12225 0.16 -1.0 172,131 - HMPREF1058_RS12225 0.20 -0.2 172,147 + HMPREF1058_RS12225 0.24 +1.6 172,147 + HMPREF1058_RS12225 0.24 +1.2 172,171 + HMPREF1058_RS12225 0.29 +0.1 172,174 - HMPREF1058_RS12225 0.30 -0.2 172,262 - HMPREF1058_RS12225 0.51 -0.8 172,310 + HMPREF1058_RS12225 0.62 +1.5 172,310 + HMPREF1058_RS12225 0.62 -1.3 172,330 + HMPREF1058_RS12225 0.67 -0.2 172,331 - HMPREF1058_RS12225 0.67 +1.0 172,331 - HMPREF1058_RS12225 0.67 +1.5 172,383 - HMPREF1058_RS12225 0.79 +1.7 172,393 + HMPREF1058_RS12225 0.82 +2.4 172,405 + HMPREF1058_RS12225 0.85 +1.2 172,453 + +1.1 172,525 - -0.6 172,571 + -3.3 172,571 + +1.1 172,571 + -0.5 172,576 + +0.7 172,577 - +0.8 172,578 + +1.2 172,578 + +0.4 172,600 + -0.3 172,601 - +0.4 172,603 - +0.9 172,605 - +0.6 172,622 + +0.1 172,622 + +2.2 172,627 + -0.8 172,627 + +0.1 172,627 + +0.8 172,640 - +0.0 172,641 + -2.3 172,641 + +0.8 172,642 - -0.7 172,739 + +2.4 172,745 + -1.3 172,746 - -1.3 172,773 - +0.3 172,776 + -1.1 172,776 + +0.1 172,782 + +0.7 172,795 - +1.2
Or see this region's nucleotide sequence