Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11880 and HMPREF1058_RS11875 are separated by 88 nucleotides HMPREF1058_RS11875 and HMPREF1058_RS11865 are separated by 265 nucleotides
HMPREF1058_RS11880: HMPREF1058_RS11880 - hypothetical protein, at 254,954 to 258,082
_RS11880
HMPREF1058_RS11875: HMPREF1058_RS11875 - hypothetical protein, at 258,171 to 259,286
_RS11875
HMPREF1058_RS11865: HMPREF1058_RS11865 - ATP-binding protein, at 259,552 to 261,162
_RS11865
Position (kb) 258
259
260 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 257.237 kb on + strand, within HMPREF1058_RS11880 at 257.238 kb on - strand, within HMPREF1058_RS11880 at 257.357 kb on + strand, within HMPREF1058_RS11880 at 257.358 kb on - strand, within HMPREF1058_RS11880 at 257.358 kb on - strand, within HMPREF1058_RS11880 at 257.358 kb on - strand, within HMPREF1058_RS11880 at 257.362 kb on + strand, within HMPREF1058_RS11880 at 257.397 kb on - strand, within HMPREF1058_RS11880 at 257.402 kb on - strand, within HMPREF1058_RS11880 at 257.412 kb on - strand, within HMPREF1058_RS11880 at 257.434 kb on + strand, within HMPREF1058_RS11880 at 257.440 kb on + strand, within HMPREF1058_RS11880 at 257.473 kb on + strand, within HMPREF1058_RS11880 at 257.474 kb on - strand, within HMPREF1058_RS11880 at 257.483 kb on + strand, within HMPREF1058_RS11880 at 257.483 kb on + strand, within HMPREF1058_RS11880 at 257.484 kb on - strand, within HMPREF1058_RS11880 at 257.484 kb on - strand, within HMPREF1058_RS11880 at 257.484 kb on - strand, within HMPREF1058_RS11880 at 257.484 kb on - strand, within HMPREF1058_RS11880 at 257.566 kb on - strand, within HMPREF1058_RS11880 at 257.594 kb on + strand, within HMPREF1058_RS11880 at 257.595 kb on - strand, within HMPREF1058_RS11880 at 257.603 kb on + strand, within HMPREF1058_RS11880 at 257.620 kb on + strand, within HMPREF1058_RS11880 at 257.625 kb on + strand, within HMPREF1058_RS11880 at 257.657 kb on + strand, within HMPREF1058_RS11880 at 257.657 kb on + strand, within HMPREF1058_RS11880 at 257.658 kb on - strand, within HMPREF1058_RS11880 at 257.704 kb on + strand, within HMPREF1058_RS11880 at 257.705 kb on - strand, within HMPREF1058_RS11880 at 257.708 kb on + strand, within HMPREF1058_RS11880 at 257.709 kb on - strand, within HMPREF1058_RS11880 at 257.799 kb on + strand at 257.813 kb on - strand at 257.914 kb on + strand at 257.941 kb on + strand at 257.968 kb on - strand at 257.968 kb on - strand at 258.162 kb on - strand at 258.163 kb on + strand at 258.164 kb on - strand at 258.171 kb on - strand at 258.177 kb on + strand at 258.178 kb on - strand at 258.179 kb on + strand at 258.180 kb on - strand at 258.181 kb on + strand at 258.181 kb on + strand at 258.181 kb on + strand at 258.181 kb on + strand at 258.182 kb on - strand at 258.183 kb on + strand at 258.183 kb on + strand at 258.183 kb on + strand at 258.184 kb on - strand at 258.206 kb on - strand at 258.209 kb on - strand at 258.209 kb on - strand at 258.262 kb on + strand at 258.360 kb on - strand, within HMPREF1058_RS11875 at 258.361 kb on + strand, within HMPREF1058_RS11875 at 258.364 kb on + strand, within HMPREF1058_RS11875 at 258.365 kb on - strand, within HMPREF1058_RS11875 at 258.387 kb on - strand, within HMPREF1058_RS11875 at 258.445 kb on + strand, within HMPREF1058_RS11875 at 258.445 kb on + strand, within HMPREF1058_RS11875 at 258.445 kb on + strand, within HMPREF1058_RS11875 at 258.446 kb on - strand, within HMPREF1058_RS11875 at 258.449 kb on + strand, within HMPREF1058_RS11875 at 258.450 kb on - strand, within HMPREF1058_RS11875 at 258.581 kb on + strand, within HMPREF1058_RS11875 at 258.582 kb on - strand, within HMPREF1058_RS11875 at 258.582 kb on - strand, within HMPREF1058_RS11875 at 258.698 kb on + strand, within HMPREF1058_RS11875 at 258.710 kb on + strand, within HMPREF1058_RS11875 at 258.723 kb on + strand, within HMPREF1058_RS11875 at 258.723 kb on + strand, within HMPREF1058_RS11875 at 258.738 kb on - strand, within HMPREF1058_RS11875 at 258.747 kb on + strand, within HMPREF1058_RS11875 at 258.747 kb on + strand, within HMPREF1058_RS11875 at 258.747 kb on + strand, within HMPREF1058_RS11875 at 258.747 kb on + strand, within HMPREF1058_RS11875 at 258.748 kb on - strand, within HMPREF1058_RS11875 at 258.749 kb on + strand, within HMPREF1058_RS11875 at 258.750 kb on - strand, within HMPREF1058_RS11875 at 258.772 kb on + strand, within HMPREF1058_RS11875 at 258.789 kb on - strand, within HMPREF1058_RS11875 at 258.794 kb on + strand, within HMPREF1058_RS11875 at 258.795 kb on - strand, within HMPREF1058_RS11875 at 258.799 kb on - strand, within HMPREF1058_RS11875 at 258.799 kb on - strand, within HMPREF1058_RS11875 at 258.917 kb on - strand, within HMPREF1058_RS11875 at 258.920 kb on - strand, within HMPREF1058_RS11875 at 259.066 kb on - strand, within HMPREF1058_RS11875 at 259.088 kb on + strand, within HMPREF1058_RS11875 at 259.089 kb on - strand, within HMPREF1058_RS11875 at 259.093 kb on - strand, within HMPREF1058_RS11875 at 259.131 kb on + strand, within HMPREF1058_RS11875 at 259.256 kb on - strand at 259.264 kb on - strand at 259.265 kb on + strand at 259.292 kb on - strand at 259.295 kb on + strand at 259.296 kb on - strand at 259.339 kb on + strand at 259.339 kb on + strand at 259.340 kb on - strand at 259.341 kb on + strand at 259.342 kb on - strand at 259.383 kb on + strand at 259.410 kb on + strand at 259.410 kb on + strand at 259.486 kb on + strand at 259.506 kb on + strand at 259.509 kb on + strand at 259.510 kb on - strand at 259.511 kb on + strand at 259.512 kb on + strand at 259.512 kb on + strand at 259.513 kb on - strand at 259.552 kb on - strand at 259.607 kb on + strand at 259.607 kb on + strand at 259.607 kb on + strand at 259.608 kb on - strand at 259.609 kb on + strand at 259.609 kb on + strand at 259.783 kb on + strand, within HMPREF1058_RS11865 at 259.806 kb on - strand, within HMPREF1058_RS11865 at 259.826 kb on - strand, within HMPREF1058_RS11865 at 259.909 kb on - strand, within HMPREF1058_RS11865 at 259.916 kb on + strand, within HMPREF1058_RS11865 at 260.005 kb on - strand, within HMPREF1058_RS11865 at 260.018 kb on + strand, within HMPREF1058_RS11865
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 257,237 + HMPREF1058_RS11880 0.73 -4.6 257,238 - HMPREF1058_RS11880 0.73 -1.9 257,357 + HMPREF1058_RS11880 0.77 -3.3 257,358 - HMPREF1058_RS11880 0.77 -3.3 257,358 - HMPREF1058_RS11880 0.77 -0.7 257,358 - HMPREF1058_RS11880 0.77 -5.5 257,362 + HMPREF1058_RS11880 0.77 -0.3 257,397 - HMPREF1058_RS11880 0.78 -5.3 257,402 - HMPREF1058_RS11880 0.78 -3.5 257,412 - HMPREF1058_RS11880 0.79 -3.5 257,434 + HMPREF1058_RS11880 0.79 -2.3 257,440 + HMPREF1058_RS11880 0.79 -3.3 257,473 + HMPREF1058_RS11880 0.81 -3.6 257,474 - HMPREF1058_RS11880 0.81 -4.1 257,483 + HMPREF1058_RS11880 0.81 -4.6 257,483 + HMPREF1058_RS11880 0.81 -5.2 257,484 - HMPREF1058_RS11880 0.81 -4.0 257,484 - HMPREF1058_RS11880 0.81 -4.2 257,484 - HMPREF1058_RS11880 0.81 -4.4 257,484 - HMPREF1058_RS11880 0.81 -4.6 257,566 - HMPREF1058_RS11880 0.83 -2.3 257,594 + HMPREF1058_RS11880 0.84 -2.6 257,595 - HMPREF1058_RS11880 0.84 -2.1 257,603 + HMPREF1058_RS11880 0.85 -3.8 257,620 + HMPREF1058_RS11880 0.85 -4.1 257,625 + HMPREF1058_RS11880 0.85 -3.5 257,657 + HMPREF1058_RS11880 0.86 -2.3 257,657 + HMPREF1058_RS11880 0.86 -1.9 257,658 - HMPREF1058_RS11880 0.86 -1.3 257,704 + HMPREF1058_RS11880 0.88 -4.0 257,705 - HMPREF1058_RS11880 0.88 -5.5 257,708 + HMPREF1058_RS11880 0.88 -4.1 257,709 - HMPREF1058_RS11880 0.88 -3.8 257,799 + +0.3 257,813 - -2.6 257,914 + -1.3 257,941 + -1.9 257,968 - -1.3 257,968 - -4.4 258,162 - -3.5 258,163 + -0.9 258,164 - -4.5 258,171 - -1.1 258,177 + -3.3 258,178 - -4.2 258,179 + -4.5 258,180 - -6.5 258,181 + -2.9 258,181 + -3.0 258,181 + -3.6 258,181 + -2.4 258,182 - -0.3 258,183 + -4.7 258,183 + -3.3 258,183 + -1.3 258,184 - -4.1 258,206 - -4.2 258,209 - -2.3 258,209 - -3.3 258,262 + -3.6 258,360 - HMPREF1058_RS11875 0.17 -4.4 258,361 + HMPREF1058_RS11875 0.17 -1.6 258,364 + HMPREF1058_RS11875 0.17 -4.2 258,365 - HMPREF1058_RS11875 0.17 -2.6 258,387 - HMPREF1058_RS11875 0.19 -2.9 258,445 + HMPREF1058_RS11875 0.25 -3.1 258,445 + HMPREF1058_RS11875 0.25 -5.1 258,445 + HMPREF1058_RS11875 0.25 -4.5 258,446 - HMPREF1058_RS11875 0.25 -0.3 258,449 + HMPREF1058_RS11875 0.25 -3.4 258,450 - HMPREF1058_RS11875 0.25 -4.4 258,581 + HMPREF1058_RS11875 0.37 -3.1 258,582 - HMPREF1058_RS11875 0.37 -5.3 258,582 - HMPREF1058_RS11875 0.37 -3.3 258,698 + HMPREF1058_RS11875 0.47 -1.3 258,710 + HMPREF1058_RS11875 0.48 -3.6 258,723 + HMPREF1058_RS11875 0.49 -1.9 258,723 + HMPREF1058_RS11875 0.49 -3.9 258,738 - HMPREF1058_RS11875 0.51 -3.4 258,747 + HMPREF1058_RS11875 0.52 -3.9 258,747 + HMPREF1058_RS11875 0.52 -0.3 258,747 + HMPREF1058_RS11875 0.52 -4.0 258,747 + HMPREF1058_RS11875 0.52 -3.5 258,748 - HMPREF1058_RS11875 0.52 -2.6 258,749 + HMPREF1058_RS11875 0.52 -3.9 258,750 - HMPREF1058_RS11875 0.52 -3.3 258,772 + HMPREF1058_RS11875 0.54 -3.6 258,789 - HMPREF1058_RS11875 0.55 -0.3 258,794 + HMPREF1058_RS11875 0.56 -0.3 258,795 - HMPREF1058_RS11875 0.56 -2.6 258,799 - HMPREF1058_RS11875 0.56 -5.3 258,799 - HMPREF1058_RS11875 0.56 -2.3 258,917 - HMPREF1058_RS11875 0.67 -0.3 258,920 - HMPREF1058_RS11875 0.67 -3.2 259,066 - HMPREF1058_RS11875 0.80 -3.0 259,088 + HMPREF1058_RS11875 0.82 -4.1 259,089 - HMPREF1058_RS11875 0.82 -2.5 259,093 - HMPREF1058_RS11875 0.83 -4.5 259,131 + HMPREF1058_RS11875 0.86 -4.3 259,256 - -2.6 259,264 - -2.9 259,265 + -1.8 259,292 - -0.8 259,295 + +2.5 259,296 - +1.4 259,339 + -1.3 259,339 + -0.6 259,340 - +1.6 259,341 + +2.5 259,342 - -1.9 259,383 + -0.2 259,410 + +0.6 259,410 + +0.3 259,486 + +2.0 259,506 + +4.2 259,509 + -1.9 259,510 - -0.5 259,511 + -2.6 259,512 + +1.6 259,512 + -0.8 259,513 - +1.6 259,552 - -2.3 259,607 + -0.3 259,607 + +1.3 259,607 + +1.3 259,608 - +0.5 259,609 + +1.2 259,609 + +0.8 259,783 + HMPREF1058_RS11865 0.14 +1.3 259,806 - HMPREF1058_RS11865 0.16 -0.3 259,826 - HMPREF1058_RS11865 0.17 +1.0 259,909 - HMPREF1058_RS11865 0.22 -0.2 259,916 + HMPREF1058_RS11865 0.23 -1.1 260,005 - HMPREF1058_RS11865 0.28 -0.3 260,018 + HMPREF1058_RS11865 0.29 -5.2
Or see this region's nucleotide sequence