Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08740

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
1,048,574	+		HMPREF1058_RS08745	0.51	-1.0
1,048,676	-		HMPREF1058_RS08745	0.56	-0.3
1,048,725	+		HMPREF1058_RS08745	0.59	-0.3
1,048,726	-		HMPREF1058_RS08745	0.59	-0.3
1,048,726	-		HMPREF1058_RS08745	0.59	-2.8
1,048,727	+		HMPREF1058_RS08745	0.59	+0.8
1,048,728	-		HMPREF1058_RS08745	0.59	-0.9
1,048,730	-		HMPREF1058_RS08745	0.59	+3.2
1,048,747	-		HMPREF1058_RS08745	0.60	+1.0
1,048,757	-		HMPREF1058_RS08745	0.61	+0.8
1,048,790	-		HMPREF1058_RS08745	0.63	+2.3
1,048,893	+		HMPREF1058_RS08745	0.68	-0.6
1,048,894	-		HMPREF1058_RS08745	0.68	-1.1
1,048,940	+		HMPREF1058_RS08745	0.70	-0.6
1,048,944	+		HMPREF1058_RS08745	0.71	-1.6
1,049,000	+		HMPREF1058_RS08745	0.74	-3.3
1,049,001	-		HMPREF1058_RS08745	0.74	-0.2
1,049,071	+		HMPREF1058_RS08745	0.77	+0.7
1,049,072	-		HMPREF1058_RS08745	0.77	-2.6
1,049,072	-		HMPREF1058_RS08745	0.77	+0.5
1,049,072	-		HMPREF1058_RS08745	0.77	+0.2
1,049,092	+		HMPREF1058_RS08745	0.79	-2.9
1,049,092	+		HMPREF1058_RS08745	0.79	+0.6
1,049,093	-		HMPREF1058_RS08745	0.79	+1.1
1,049,093	-		HMPREF1058_RS08745	0.79	+0.7
1,049,097	-		HMPREF1058_RS08745	0.79	+4.8
1,049,127	+		HMPREF1058_RS08745	0.80	-0.3
1,049,129	+		HMPREF1058_RS08745	0.80	-0.3
1,049,129	+		HMPREF1058_RS08745	0.80	-0.8
1,049,129	+		HMPREF1058_RS08745	0.80	-1.2
1,049,262	+		HMPREF1058_RS08745	0.88	-0.9
1,049,263	-		HMPREF1058_RS08745	0.88	-1.3
1,049,333	+				-0.7
1,049,334	-				-1.3
1,049,434	+				-0.3
1,049,462	-				+0.7
1,049,490	-				+0.3
1,049,538	+				-0.2
1,049,539	-				+2.3
1,049,548	+				+0.1
1,049,553	-				-3.1
1,049,563	-				+2.9
1,049,563	-				-0.6
1,049,635	-				+1.8
1,049,649	-				-0.6
1,049,718	+				-0.4
1,049,719	-				-3.6
1,049,742	+				-0.4
1,049,749	-				+1.0
1,049,760	+				-0.3
1,049,762	+				+0.0
1,049,762	+				-1.5
1,049,813	+				-0.9
1,049,813	+				+3.2
1,049,814	-				-0.8
1,049,880	-		HMPREF1058_RS08740	0.11	+1.7
1,049,940	+		HMPREF1058_RS08740	0.13	-3.1
1,049,961	+		HMPREF1058_RS08740	0.13	-1.0
1,049,971	-		HMPREF1058_RS08740	0.14	-3.5
1,049,973	-		HMPREF1058_RS08740	0.14	-2.6
1,050,079	+		HMPREF1058_RS08740	0.17	-0.3
1,050,079	+		HMPREF1058_RS08740	0.17	-2.7
1,050,079	+		HMPREF1058_RS08740	0.17	-2.0
1,050,080	-		HMPREF1058_RS08740	0.17	-1.3
1,050,155	-		HMPREF1058_RS08740	0.19	+0.1
1,050,166	+		HMPREF1058_RS08740	0.20	-0.0
1,050,167	-		HMPREF1058_RS08740	0.20	-0.9
1,050,229	-		HMPREF1058_RS08740	0.22	+0.2
1,050,229	-		HMPREF1058_RS08740	0.22	-0.5
1,050,269	-		HMPREF1058_RS08740	0.23	+0.6
1,050,317	+		HMPREF1058_RS08740	0.24	-0.8
1,050,348	+		HMPREF1058_RS08740	0.25	-1.0
1,050,388	-		HMPREF1058_RS08740	0.26	-1.1
1,050,389	+		HMPREF1058_RS08740	0.26	-1.1
1,050,389	+		HMPREF1058_RS08740	0.26	-2.4
1,050,389	+		HMPREF1058_RS08740	0.26	-0.6
1,050,390	-		HMPREF1058_RS08740	0.26	+0.3
1,050,415	+		HMPREF1058_RS08740	0.27	-1.4
1,050,471	+		HMPREF1058_RS08740	0.29	-1.3
1,050,487	-		HMPREF1058_RS08740	0.29	-2.1
1,050,493	+		HMPREF1058_RS08740	0.30	-1.4
1,050,493	+		HMPREF1058_RS08740	0.30	-1.7
1,050,494	-		HMPREF1058_RS08740	0.30	-0.1
1,050,536	-		HMPREF1058_RS08740	0.31	-0.2
1,050,609	-		HMPREF1058_RS08740	0.33	-1.6
1,050,612	-		HMPREF1058_RS08740	0.33	-2.9
1,050,690	+		HMPREF1058_RS08740	0.36	-2.5
1,050,730	-		HMPREF1058_RS08740	0.37	+0.1
1,050,731	+		HMPREF1058_RS08740	0.37	+2.5
1,050,735	+		HMPREF1058_RS08740	0.37	-0.4
1,050,736	-		HMPREF1058_RS08740	0.37	+0.7
1,050,798	+		HMPREF1058_RS08740	0.39	+0.1
1,050,808	+		HMPREF1058_RS08740	0.39	-2.3
1,050,859	-		HMPREF1058_RS08740	0.41	+1.4
1,050,909	-		HMPREF1058_RS08740	0.42	-1.3
1,050,915	-		HMPREF1058_RS08740	0.42	-0.3
1,050,924	+		HMPREF1058_RS08740	0.43	+1.5
1,050,931	-		HMPREF1058_RS08740	0.43	+0.2
1,050,943	+		HMPREF1058_RS08740	0.43	+0.3
1,050,943	+		HMPREF1058_RS08740	0.43	-3.1
1,050,944	-		HMPREF1058_RS08740	0.43	-1.4
1,050,944	-		HMPREF1058_RS08740	0.43	-0.5
1,050,987	-		HMPREF1058_RS08740	0.45	-0.8
1,051,032	+		HMPREF1058_RS08740	0.46	-2.1
1,051,160	+		HMPREF1058_RS08740	0.50	+1.3
1,051,161	-		HMPREF1058_RS08740	0.50	-1.3
1,051,161	-		HMPREF1058_RS08740	0.50	-0.3
1,051,202	-		HMPREF1058_RS08740	0.51	-0.3
1,051,250	-		HMPREF1058_RS08740	0.53	-0.2
1,051,268	+		HMPREF1058_RS08740	0.53	-0.6
1,051,271	+		HMPREF1058_RS08740	0.53	-0.3
1,051,315	+		HMPREF1058_RS08740	0.55	+0.3
1,051,317	+		HMPREF1058_RS08740	0.55	-1.1
1,051,379	-		HMPREF1058_RS08740	0.57	+3.0
1,051,431	-		HMPREF1058_RS08740	0.58	+2.1
1,051,434	+		HMPREF1058_RS08740	0.58	+2.9
1,051,493	+		HMPREF1058_RS08740	0.60	-2.1
1,051,494	-		HMPREF1058_RS08740	0.60	-2.1
1,051,525	+		HMPREF1058_RS08740	0.61	-0.9
1,051,529	+		HMPREF1058_RS08740	0.61	+0.2
1,051,544	+		HMPREF1058_RS08740	0.62	-0.9
1,051,680	+		HMPREF1058_RS08740	0.66	-0.4
1,051,680	+		HMPREF1058_RS08740	0.66	-0.3
1,051,680	+		HMPREF1058_RS08740	0.66	-1.9
1,051,680	+		HMPREF1058_RS08740	0.66	-1.1
1,051,681	-		HMPREF1058_RS08740	0.66	-0.1
1,051,757	-		HMPREF1058_RS08740	0.68	-1.1
1,051,757	-		HMPREF1058_RS08740	0.68	-0.6
1,051,766	+		HMPREF1058_RS08740	0.68	-2.6
1,051,815	+				-0.3
1,051,825	+		HMPREF1058_RS08740	0.70	-0.2
1,051,825	+		HMPREF1058_RS08740	0.70	+0.8
1,051,830	+		HMPREF1058_RS08740	0.70	-1.2
1,051,830	+		HMPREF1058_RS08740	0.70	-0.3
1,051,834	+		HMPREF1058_RS08740	0.70	-0.6
1,051,855	-		HMPREF1058_RS08740	0.71	+1.1
1,051,865	+		HMPREF1058_RS08740	0.71	-1.3
1,051,865	+		HMPREF1058_RS08740	0.71	-0.7
1,051,865	+		HMPREF1058_RS08740	0.71	-1.9
1,051,866	-		HMPREF1058_RS08740	0.71	-2.5
1,051,879	-		HMPREF1058_RS08740	0.72	-0.6
1,051,886	+		HMPREF1058_RS08740	0.72	-1.7
1,051,887	-		HMPREF1058_RS08740	0.72	-2.9
1,051,887	-		HMPREF1058_RS08740	0.72	+1.5
1,051,910	+		HMPREF1058_RS08740	0.73	-1.1
1,051,911	-		HMPREF1058_RS08740	0.73	-3.1
1,051,914	+		HMPREF1058_RS08740	0.73	-4.6
1,051,937	-		HMPREF1058_RS08740	0.74	+0.8
1,051,942	+		HMPREF1058_RS08740	0.74	+0.1
1,051,942	+		HMPREF1058_RS08740	0.74	+0.4
1,051,943	-		HMPREF1058_RS08740	0.74	+0.5
1,051,943	-		HMPREF1058_RS08740	0.74	-1.5
1,051,943	-		HMPREF1058_RS08740	0.74	+0.6
1,051,945	+		HMPREF1058_RS08740	0.74	+1.0
1,051,950	+		HMPREF1058_RS08740	0.74	+0.3
1,051,950	+		HMPREF1058_RS08740	0.74	-1.2
1,051,951	-		HMPREF1058_RS08740	0.74	-0.6
1,051,975	-		HMPREF1058_RS08740	0.75	+0.8
1,052,034	-				-2.3
1,052,047	+		HMPREF1058_RS08740	0.77	+2.6
1,052,047	+		HMPREF1058_RS08740	0.77	-1.8
1,052,048	-		HMPREF1058_RS08740	0.77	-0.3
1,052,181	-		HMPREF1058_RS08740	0.81	+0.8
1,052,209	+		HMPREF1058_RS08740	0.82	-0.9
1,052,305	-		HMPREF1058_RS08740	0.85	-1.3
1,052,314	+		HMPREF1058_RS08740	0.85	-0.3
1,052,315	-		HMPREF1058_RS08740	0.85	+1.0
1,052,348	+		HMPREF1058_RS08740	0.86	-1.9
1,052,348	+		HMPREF1058_RS08740	0.86	-0.9
1,052,348	+		HMPREF1058_RS08740	0.86	-1.3
1,052,349	-		HMPREF1058_RS08740	0.86	-0.4
1,052,455	-		HMPREF1058_RS08740	0.89	+1.0
1,052,497	+				+0.1
1,052,497	+				-1.3
1,052,605	+				+0.1
1,052,611	+				+2.0
1,052,660	-				-1.1
1,052,730	+				+1.0
1,052,730	+				-0.8
1,052,731	-				+1.8
1,052,731	-				-0.0
1,052,752	+				-1.3
1,052,753	-				-1.4
1,053,104	-				+0.9
1,053,114	-				-0.3
1,053,144	-				+1.1
1,053,144	-				-1.9
1,053,168	+				+1.6
1,053,200	-				-1.1
1,053,207	-				+0.5
1,053,214	-				+1.6
1,053,235	+				-0.7
1,053,236	-				-0.6
1,053,237	+				+1.5
1,053,298	+		HMPREF1058_RS08735	0.11	+2.1
1,053,299	-				-0.3
1,053,300	+		HMPREF1058_RS08735	0.11	-0.4
1,053,424	-		HMPREF1058_RS08735	0.22	+1.5
1,053,593	-		HMPREF1058_RS08735	0.36	+0.3
1,053,598	+		HMPREF1058_RS08735	0.36	+2.1
1,053,622	+		HMPREF1058_RS08735	0.38	-0.9
1,053,623	-		HMPREF1058_RS08735	0.38	+0.4
1,053,623	-		HMPREF1058_RS08735	0.38	-1.7
1,053,624	+		HMPREF1058_RS08735	0.39	-1.2
1,053,625	-		HMPREF1058_RS08735	0.39	-0.1
1,053,626	+		HMPREF1058_RS08735	0.39	+0.9
1,053,626	+		HMPREF1058_RS08735	0.39	-4.0
1,053,649	+		HMPREF1058_RS08735	0.41	-0.3
1,053,649	+		HMPREF1058_RS08735	0.41	-0.3
1,053,649	+		HMPREF1058_RS08735	0.41	-1.2
1,053,650	-		HMPREF1058_RS08735	0.41	-1.1
1,053,650	-		HMPREF1058_RS08735	0.41	+0.7
1,053,650	-		HMPREF1058_RS08735	0.41	-0.3
1,053,659	-		HMPREF1058_RS08735	0.41	+0.9
1,053,671	+		HMPREF1058_RS08735	0.42	-1.7
1,053,671	+		HMPREF1058_RS08735	0.42	+2.3
1,053,672	-		HMPREF1058_RS08735	0.43	+0.7
1,053,717	-		HMPREF1058_RS08735	0.46	+0.8
1,053,750	+		HMPREF1058_RS08735	0.49	+1.6
1,053,802	+		HMPREF1058_RS08735	0.53	-0.6