Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08695

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
1,067,115	-		HMPREF1058_RS08700	0.72	-0.8
1,067,160	-		HMPREF1058_RS08700	0.73	-0.3
1,067,331	+		HMPREF1058_RS08700	0.78	+1.6
1,067,335	+		HMPREF1058_RS08700	0.78	-1.1
1,067,358	+		HMPREF1058_RS08700	0.79	-1.1
1,067,358	+		HMPREF1058_RS08700	0.79	-1.2
1,067,359	-		HMPREF1058_RS08700	0.79	-0.3
1,067,409	+		HMPREF1058_RS08700	0.80	-0.7
1,067,411	+		HMPREF1058_RS08700	0.81	-1.3
1,067,499	+		HMPREF1058_RS08700	0.83	-0.9
1,067,499	+		HMPREF1058_RS08700	0.83	+0.3
1,067,500	-		HMPREF1058_RS08700	0.83	-1.8
1,067,546	+		HMPREF1058_RS08700	0.85	+0.2
1,067,649	+		HMPREF1058_RS08700	0.88	-0.7
1,067,649	+		HMPREF1058_RS08700	0.88	+0.0
1,067,651	+		HMPREF1058_RS08700	0.88	+0.1
1,067,651	+		HMPREF1058_RS08700	0.88	-1.4
1,067,652	-		HMPREF1058_RS08700	0.88	+0.2
1,067,661	+		HMPREF1058_RS08700	0.88	+1.0
1,067,670	+		HMPREF1058_RS08700	0.88	+0.7
1,067,688	+		HMPREF1058_RS08700	0.89	-0.6
1,067,689	-		HMPREF1058_RS08700	0.89	+3.0
1,067,690	+		HMPREF1058_RS08700	0.89	-1.3
1,067,691	-		HMPREF1058_RS08700	0.89	+0.2
1,067,691	-		HMPREF1058_RS08700	0.89	-1.5
1,067,763	+				-0.3
1,067,764	-				-0.9
1,067,764	-				-2.1
1,067,793	+				+0.7
1,067,819	-				-2.9
1,067,819	-				-2.6
1,067,862	-				-1.5
1,067,972	+				-1.3
1,067,972	+				-3.6
1,067,972	+				-2.4
1,067,972	+				-0.4
1,067,973	-				-1.4
1,067,977	-				-1.9
1,068,023	+				+1.7
1,068,062	+				-4.4
1,068,086	+				+1.9
1,068,087	-				-0.5
1,068,164	+				-2.4
1,068,219	+				+0.3
1,068,219	+				-0.2
1,068,220	-				-0.3
1,068,220	-				+0.7
1,068,307	-		HMPREF1058_RS08695	0.12	-2.6
1,068,307	-		HMPREF1058_RS08695	0.12	-0.6
1,068,354	-		HMPREF1058_RS08695	0.15	-1.8
1,068,357	+				-0.3
1,068,358	-		HMPREF1058_RS08695	0.15	-1.1
1,068,358	-		HMPREF1058_RS08695	0.15	-1.3
1,068,375	-		HMPREF1058_RS08695	0.16	-3.5
1,068,411	-		HMPREF1058_RS08695	0.18	-1.1
1,068,565	+		HMPREF1058_RS08695	0.25	+0.1
1,068,566	-		HMPREF1058_RS08695	0.25	+0.7
1,068,635	+		HMPREF1058_RS08695	0.29	-0.1
1,068,635	+		HMPREF1058_RS08695	0.29	-1.5
1,068,679	-		HMPREF1058_RS08695	0.31	-1.6
1,068,693	-		HMPREF1058_RS08695	0.32	-1.3
1,068,702	-		HMPREF1058_RS08695	0.32	-1.4
1,068,707	-		HMPREF1058_RS08695	0.32	-0.3
1,068,718	+		HMPREF1058_RS08695	0.33	-1.3
1,068,729	+		HMPREF1058_RS08695	0.34	-0.7
1,068,729	+		HMPREF1058_RS08695	0.34	-2.3
1,068,749	-		HMPREF1058_RS08695	0.35	-1.3
1,068,788	-		HMPREF1058_RS08695	0.37	-1.8
1,068,855	+		HMPREF1058_RS08695	0.40	-1.9
1,068,856	-		HMPREF1058_RS08695	0.40	-0.0
1,068,858	-		HMPREF1058_RS08695	0.40	-1.5
1,068,935	+		HMPREF1058_RS08695	0.44	-2.6
1,068,983	+		HMPREF1058_RS08695	0.46	-1.2
1,068,984	-		HMPREF1058_RS08695	0.46	-0.6
1,069,026	+		HMPREF1058_RS08695	0.48	-1.9
1,069,027	-		HMPREF1058_RS08695	0.49	-1.6
1,069,078	+		HMPREF1058_RS08695	0.51	-1.3
1,069,204	+		HMPREF1058_RS08695	0.57	-2.3
1,069,221	-		HMPREF1058_RS08695	0.58	-1.3
1,069,260	+		HMPREF1058_RS08695	0.60	-2.1
1,069,275	+		HMPREF1058_RS08695	0.61	-2.0
1,069,287	+		HMPREF1058_RS08695	0.62	-1.6
1,069,287	+		HMPREF1058_RS08695	0.62	-1.0
1,069,288	-		HMPREF1058_RS08695	0.62	-0.9
1,069,288	-		HMPREF1058_RS08695	0.62	-2.0
1,069,288	-		HMPREF1058_RS08695	0.62	-0.9
1,069,289	+		HMPREF1058_RS08695	0.62	-2.6
1,069,290	-		HMPREF1058_RS08695	0.62	+0.2
1,069,311	+		HMPREF1058_RS08695	0.63	-1.3
1,069,311	+		HMPREF1058_RS08695	0.63	-0.3
1,069,312	-		HMPREF1058_RS08695	0.63	-0.6
1,069,313	+		HMPREF1058_RS08695	0.63	-2.9
1,069,340	+		HMPREF1058_RS08695	0.64	-0.3
1,069,345	+		HMPREF1058_RS08695	0.65	-1.2
1,069,345	+		HMPREF1058_RS08695	0.65	-1.2
1,069,389	-		HMPREF1058_RS08695	0.67	-0.9
1,069,389	-		HMPREF1058_RS08695	0.67	-1.3
1,069,444	+		HMPREF1058_RS08695	0.70	-2.1
1,069,533	+		HMPREF1058_RS08695	0.74	-0.9
1,069,543	+		HMPREF1058_RS08695	0.75	+0.9
1,069,544	-		HMPREF1058_RS08695	0.75	-0.3
1,069,584	-		HMPREF1058_RS08695	0.77	-1.3
1,069,654	-		HMPREF1058_RS08695	0.80	-0.5
1,069,741	+		HMPREF1058_RS08695	0.84	-3.1
1,069,959	+				-1.4
1,069,983	-				+3.2
1,070,037	+				-1.7
1,070,037	+				-1.6
1,070,038	-				-0.8
1,070,039	+				-0.6
1,070,056	+				-0.9
1,070,056	+				-1.0
1,070,061	-				-2.6
1,070,082	-				-2.5
1,070,091	-				-0.5
1,070,135	+		HMPREF1058_RS08690	0.10	+0.8
1,070,238	+		HMPREF1058_RS08690	0.24	-3.5
1,070,271	+		HMPREF1058_RS08690	0.29	-1.9
1,070,272	-		HMPREF1058_RS08690	0.29	-2.0
1,070,272	-		HMPREF1058_RS08690	0.29	-0.1
1,070,404	+		HMPREF1058_RS08690	0.47	+0.5
1,070,404	+		HMPREF1058_RS08690	0.47	-0.8
1,070,438	-		HMPREF1058_RS08690	0.52	+3.1
1,070,439	+		HMPREF1058_RS08690	0.52	-0.3
1,070,439	+		HMPREF1058_RS08690	0.52	-1.9
1,070,439	+		HMPREF1058_RS08690	0.52	+0.1
1,070,440	-		HMPREF1058_RS08690	0.52	-2.2
1,070,440	-		HMPREF1058_RS08690	0.52	-0.8
1,070,440	-		HMPREF1058_RS08690	0.52	+0.4
1,070,443	+		HMPREF1058_RS08690	0.53	-0.0
1,070,443	+		HMPREF1058_RS08690	0.53	-1.9
1,070,444	-		HMPREF1058_RS08690	0.53	-1.3
1,070,444	-		HMPREF1058_RS08690	0.53	-3.6
1,070,452	+		HMPREF1058_RS08690	0.54	-1.9
1,070,453	-		HMPREF1058_RS08690	0.54	-0.9
1,070,453	-		HMPREF1058_RS08690	0.54	-1.3
1,070,453	-		HMPREF1058_RS08690	0.54	-0.6
1,070,470	+		HMPREF1058_RS08690	0.56	-2.1
1,070,475	+		HMPREF1058_RS08690	0.57	-0.3
1,070,486	+		HMPREF1058_RS08690	0.59	+0.1
1,070,486	+		HMPREF1058_RS08690	0.59	+0.3
1,070,487	-		HMPREF1058_RS08690	0.59	+0.5
1,070,565	+		HMPREF1058_RS08690	0.69	-1.5
1,070,618	-		HMPREF1058_RS08690	0.77	-1.3
1,070,753	+				-1.3
1,070,754	-				-0.9
1,070,757	+				-0.2
1,070,758	-				-0.8
1,070,758	-				-0.5
1,070,764	+				-0.6
1,070,764	+				-3.3
1,070,810	+				-0.8
1,070,811	-				+0.7
1,070,869	-				-0.4
1,070,884	+				-1.9
1,070,906	-				-0.1
1,070,933	+				+0.2
1,070,953	-		HMPREF1058_RS08685	0.13	+0.4
1,070,990	+		HMPREF1058_RS08685	0.18	-1.5
1,071,024	+		HMPREF1058_RS08685	0.24	+0.5
1,071,039	+		HMPREF1058_RS08685	0.26	+0.2
1,071,045	+		HMPREF1058_RS08685	0.27	+0.7
1,071,045	+		HMPREF1058_RS08685	0.27	-0.6