Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02970 and HMPREF1058_RS02965 are separated by 228 nucleotides HMPREF1058_RS02965 and HMPREF1058_RS02960 are separated by 14 nucleotides HMPREF1058_RS02960 and HMPREF1058_RS02955 are separated by 15 nucleotides
HMPREF1058_RS02970: HMPREF1058_RS02970 - DNA mismatch repair endonuclease MutL, at 41,667 to 43,535
_RS02970
HMPREF1058_RS02965: HMPREF1058_RS02965 - BamA/TamA family outer membrane protein, at 43,764 to 44,972
_RS02965
HMPREF1058_RS02960: HMPREF1058_RS02960 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 44,987 to 45,796
_RS02960
HMPREF1058_RS02955: HMPREF1058_RS02955 - SLC13/DASS family transporter, at 45,812 to 47,365
_RS02955
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.837 kb on + strand, within HMPREF1058_RS02970 at 42.895 kb on - strand, within HMPREF1058_RS02970 at 42.939 kb on + strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 43.072 kb on + strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.087 kb on + strand, within HMPREF1058_RS02970 at 43.336 kb on + strand, within HMPREF1058_RS02970 at 43.467 kb on + strand at 43.570 kb on + strand at 43.759 kb on - strand at 43.761 kb on + strand at 43.762 kb on - strand at 43.772 kb on - strand at 43.778 kb on - strand at 43.778 kb on - strand at 43.837 kb on + strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.916 kb on + strand, within HMPREF1058_RS02965 at 43.918 kb on + strand, within HMPREF1058_RS02965 at 43.919 kb on - strand, within HMPREF1058_RS02965 at 43.924 kb on - strand, within HMPREF1058_RS02965 at 43.925 kb on + strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.930 kb on + strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.979 kb on + strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.991 kb on + strand, within HMPREF1058_RS02965 at 43.992 kb on - strand at 44.150 kb on + strand, within HMPREF1058_RS02965 at 44.190 kb on - strand, within HMPREF1058_RS02965 at 44.230 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.460 kb on + strand, within HMPREF1058_RS02965 at 44.463 kb on - strand, within HMPREF1058_RS02965 at 44.473 kb on - strand, within HMPREF1058_RS02965 at 44.496 kb on + strand, within HMPREF1058_RS02965 at 44.520 kb on - strand, within HMPREF1058_RS02965 at 44.522 kb on + strand, within HMPREF1058_RS02965 at 44.574 kb on - strand, within HMPREF1058_RS02965 at 44.584 kb on + strand, within HMPREF1058_RS02965 at 44.644 kb on + strand, within HMPREF1058_RS02965 at 44.644 kb on + strand, within HMPREF1058_RS02965 at 44.673 kb on + strand, within HMPREF1058_RS02965 at 44.676 kb on + strand, within HMPREF1058_RS02965 at 44.676 kb on + strand, within HMPREF1058_RS02965 at 44.676 kb on + strand, within HMPREF1058_RS02965 at 44.677 kb on - strand, within HMPREF1058_RS02965 at 44.677 kb on - strand, within HMPREF1058_RS02965 at 44.753 kb on + strand, within HMPREF1058_RS02965 at 44.754 kb on - strand, within HMPREF1058_RS02965 at 44.754 kb on - strand, within HMPREF1058_RS02965 at 44.768 kb on + strand, within HMPREF1058_RS02965 at 44.769 kb on - strand, within HMPREF1058_RS02965 at 44.769 kb on - strand, within HMPREF1058_RS02965 at 44.899 kb on + strand at 44.900 kb on - strand at 44.900 kb on - strand at 44.947 kb on - strand at 45.003 kb on + strand at 45.006 kb on + strand at 45.007 kb on - strand at 45.056 kb on + strand at 45.056 kb on + strand at 45.057 kb on - strand at 45.057 kb on - strand at 45.059 kb on - strand at 45.152 kb on + strand, within HMPREF1058_RS02960 at 45.229 kb on + strand, within HMPREF1058_RS02960 at 45.274 kb on - strand, within HMPREF1058_RS02960 at 45.345 kb on - strand, within HMPREF1058_RS02960 at 45.345 kb on - strand, within HMPREF1058_RS02960 at 45.345 kb on - strand, within HMPREF1058_RS02960 at 45.398 kb on - strand, within HMPREF1058_RS02960 at 45.540 kb on - strand, within HMPREF1058_RS02960 at 45.542 kb on - strand, within HMPREF1058_RS02960 at 45.561 kb on + strand, within HMPREF1058_RS02960 at 45.562 kb on - strand, within HMPREF1058_RS02960 at 45.562 kb on - strand, within HMPREF1058_RS02960 at 45.563 kb on + strand, within HMPREF1058_RS02960 at 45.656 kb on - strand, within HMPREF1058_RS02960 at 45.714 kb on + strand, within HMPREF1058_RS02960 at 45.715 kb on - strand, within HMPREF1058_RS02960 at 45.715 kb on - strand at 45.746 kb on + strand at 45.747 kb on - strand at 45.795 kb on - strand at 45.795 kb on - strand at 45.847 kb on - strand at 45.847 kb on - strand at 45.915 kb on + strand at 45.934 kb on + strand at 45.937 kb on - strand at 45.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 42,837 + HMPREF1058_RS02970 0.63 -0.1 42,895 - HMPREF1058_RS02970 0.66 -3.0 42,939 + HMPREF1058_RS02970 0.68 -1.5 42,940 - HMPREF1058_RS02970 0.68 +0.7 42,940 - HMPREF1058_RS02970 0.68 -0.2 43,072 + HMPREF1058_RS02970 0.75 -1.1 43,084 - HMPREF1058_RS02970 0.76 -0.1 43,084 - HMPREF1058_RS02970 0.76 -0.1 43,084 - HMPREF1058_RS02970 0.76 -1.6 43,085 + HMPREF1058_RS02970 0.76 -1.1 43,085 + HMPREF1058_RS02970 0.76 -1.6 43,087 + HMPREF1058_RS02970 0.76 -0.1 43,336 + HMPREF1058_RS02970 0.89 +0.9 43,467 + +0.9 43,570 + -1.1 43,759 - -1.1 43,761 + -1.9 43,762 - +0.9 43,772 - +0.1 43,778 - -0.4 43,778 - +2.1 43,837 + -2.4 43,838 - -2.5 43,838 - -1.8 43,838 - -1.8 43,916 + HMPREF1058_RS02965 0.13 +1.0 43,918 + HMPREF1058_RS02965 0.13 -0.3 43,919 - HMPREF1058_RS02965 0.13 -0.5 43,924 - HMPREF1058_RS02965 0.13 -0.6 43,925 + HMPREF1058_RS02965 0.13 -0.6 43,926 - HMPREF1058_RS02965 0.13 -3.2 43,926 - HMPREF1058_RS02965 0.13 -2.5 43,930 + HMPREF1058_RS02965 0.14 +1.0 43,950 - HMPREF1058_RS02965 0.15 -0.7 43,950 - HMPREF1058_RS02965 0.15 -0.1 43,950 - HMPREF1058_RS02965 0.15 -1.3 43,979 + HMPREF1058_RS02965 0.18 -0.9 43,980 - HMPREF1058_RS02965 0.18 +0.7 43,980 - HMPREF1058_RS02965 0.18 -0.9 43,991 + HMPREF1058_RS02965 0.19 -1.3 43,992 - +2.5 44,150 + HMPREF1058_RS02965 0.32 -1.5 44,190 - HMPREF1058_RS02965 0.35 +0.7 44,230 - HMPREF1058_RS02965 0.39 +0.0 44,431 - HMPREF1058_RS02965 0.55 -1.4 44,431 - HMPREF1058_RS02965 0.55 -2.6 44,460 + HMPREF1058_RS02965 0.58 -1.8 44,463 - HMPREF1058_RS02965 0.58 -2.2 44,473 - HMPREF1058_RS02965 0.59 -3.2 44,496 + HMPREF1058_RS02965 0.61 -0.5 44,520 - HMPREF1058_RS02965 0.63 -0.2 44,522 + HMPREF1058_RS02965 0.63 +0.9 44,574 - HMPREF1058_RS02965 0.67 -1.8 44,584 + HMPREF1058_RS02965 0.68 -1.1 44,644 + HMPREF1058_RS02965 0.73 -0.6 44,644 + HMPREF1058_RS02965 0.73 -2.9 44,673 + HMPREF1058_RS02965 0.75 -2.1 44,676 + HMPREF1058_RS02965 0.75 -1.0 44,676 + HMPREF1058_RS02965 0.75 +0.4 44,676 + HMPREF1058_RS02965 0.75 -0.1 44,677 - HMPREF1058_RS02965 0.76 -1.4 44,677 - HMPREF1058_RS02965 0.76 -0.1 44,753 + HMPREF1058_RS02965 0.82 -1.6 44,754 - HMPREF1058_RS02965 0.82 -1.4 44,754 - HMPREF1058_RS02965 0.82 -1.8 44,768 + HMPREF1058_RS02965 0.83 +0.9 44,769 - HMPREF1058_RS02965 0.83 -1.9 44,769 - HMPREF1058_RS02965 0.83 -1.3 44,899 + -2.1 44,900 - -1.5 44,900 - -2.3 44,947 - -3.1 45,003 + -0.8 45,006 + +0.7 45,007 - -0.1 45,056 + -1.6 45,056 + -0.4 45,057 - -1.6 45,057 - -0.9 45,059 - -1.1 45,152 + HMPREF1058_RS02960 0.20 -0.0 45,229 + HMPREF1058_RS02960 0.30 +1.1 45,274 - HMPREF1058_RS02960 0.35 -0.8 45,345 - HMPREF1058_RS02960 0.44 +2.3 45,345 - HMPREF1058_RS02960 0.44 -0.6 45,345 - HMPREF1058_RS02960 0.44 -0.6 45,398 - HMPREF1058_RS02960 0.51 -2.8 45,540 - HMPREF1058_RS02960 0.68 -1.2 45,542 - HMPREF1058_RS02960 0.69 -1.5 45,561 + HMPREF1058_RS02960 0.71 -0.9 45,562 - HMPREF1058_RS02960 0.71 -2.1 45,562 - HMPREF1058_RS02960 0.71 -1.1 45,563 + HMPREF1058_RS02960 0.71 +0.4 45,656 - HMPREF1058_RS02960 0.83 -0.1 45,714 + HMPREF1058_RS02960 0.90 -0.7 45,715 - HMPREF1058_RS02960 0.90 -3.5 45,715 - -0.1 45,746 + -3.1 45,747 - -1.8 45,795 - -0.1 45,795 - -3.4 45,847 - -2.5 45,847 - +0.2 45,915 + -0.1 45,934 + -1.1 45,937 - -1.6 45,937 - -0.9
Or see this region's nucleotide sequence