Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02940

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02950 and HMPREF1058_RS02945 are separated by 11 nucleotidesHMPREF1058_RS02945 and HMPREF1058_RS02940 are separated by 36 nucleotidesHMPREF1058_RS02940 and HMPREF1058_RS02935 are separated by 27 nucleotides HMPREF1058_RS02950: HMPREF1058_RS02950 - adenylyl-sulfate kinase, at 47,395 to 48,009 _RS02950 HMPREF1058_RS02945: HMPREF1058_RS02945 - sulfate adenylyltransferase subunit CysD, at 48,021 to 48,932 _RS02945 HMPREF1058_RS02940: HMPREF1058_RS02940 - sulfate adenylyltransferase subunit CysN, at 48,969 to 50,426 _RS02940 HMPREF1058_RS02935: HMPREF1058_RS02935 - sulfotransferase, at 50,454 to 51,560 _RS02935 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 48.007 kb on + strandat 48.078 kb on - strandat 48.123 kb on + strand, within HMPREF1058_RS02945at 48.124 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.241 kb on + strand, within HMPREF1058_RS02945at 48.242 kb on - strand, within HMPREF1058_RS02945at 48.297 kb on - strand, within HMPREF1058_RS02945at 48.299 kb on + strand, within HMPREF1058_RS02945at 48.323 kb on - strand, within HMPREF1058_RS02945at 48.399 kb on + strand, within HMPREF1058_RS02945at 48.465 kb on - strand, within HMPREF1058_RS02945at 48.542 kb on + strand, within HMPREF1058_RS02945at 48.543 kb on - strand, within HMPREF1058_RS02945at 48.635 kb on + strand, within HMPREF1058_RS02945at 48.678 kb on - strand, within HMPREF1058_RS02945at 48.925 kb on - strandat 48.931 kb on - strandat 48.943 kb on - strandat 48.997 kb on - strandat 49.004 kb on + strandat 49.224 kb on - strand, within HMPREF1058_RS02940at 49.224 kb on - strand, within HMPREF1058_RS02940at 49.245 kb on + strandat 49.302 kb on + strand, within HMPREF1058_RS02940at 49.303 kb on - strand, within HMPREF1058_RS02940at 49.303 kb on - strand, within HMPREF1058_RS02940at 49.331 kb on + strand, within HMPREF1058_RS02940at 49.598 kb on + strand, within HMPREF1058_RS02940at 49.608 kb on + strand, within HMPREF1058_RS02940at 49.617 kb on - strand, within HMPREF1058_RS02940at 49.617 kb on - strand, within HMPREF1058_RS02940at 49.664 kb on + strand, within HMPREF1058_RS02940at 49.700 kb on - strand, within HMPREF1058_RS02940at 49.760 kb on + strand, within HMPREF1058_RS02940at 49.806 kb on - strand, within HMPREF1058_RS02940at 49.814 kb on + strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.907 kb on + strand, within HMPREF1058_RS02940at 49.908 kb on - strand, within HMPREF1058_RS02940at 49.939 kb on + strand, within HMPREF1058_RS02940at 49.940 kb on - strand, within HMPREF1058_RS02940at 50.019 kb on - strand, within HMPREF1058_RS02940at 50.044 kb on + strand, within HMPREF1058_RS02940at 50.044 kb on + strand, within HMPREF1058_RS02940at 50.045 kb on - strand, within HMPREF1058_RS02940at 50.048 kb on + strand, within HMPREF1058_RS02940at 50.055 kb on - strand, within HMPREF1058_RS02940at 50.055 kb on - strand, within HMPREF1058_RS02940at 50.163 kb on - strand, within HMPREF1058_RS02940at 50.270 kb on + strand, within HMPREF1058_RS02940at 50.272 kb on + strand, within HMPREF1058_RS02940at 50.337 kb on - strandat 50.416 kb on + strandat 50.432 kb on + strandat 50.433 kb on - strandat 50.461 kb on + strandat 50.490 kb on - strandat 50.717 kb on + strand, within HMPREF1058_RS02935at 50.718 kb on - strand, within HMPREF1058_RS02935at 50.750 kb on + strand, within HMPREF1058_RS02935at 50.751 kb on - strand, within HMPREF1058_RS02935at 50.756 kb on + strand, within HMPREF1058_RS02935at 50.761 kb on - strand, within HMPREF1058_RS02935at 50.907 kb on - strand, within HMPREF1058_RS02935at 50.917 kb on - strand, within HMPREF1058_RS02935at 50.918 kb on + strand, within HMPREF1058_RS02935at 50.918 kb on + strand, within HMPREF1058_RS02935at 50.922 kb on + strand, within HMPREF1058_RS02935at 50.922 kb on + strand, within HMPREF1058_RS02935at 50.923 kb on - strand, within HMPREF1058_RS02935at 51.023 kb on + strand, within HMPREF1058_RS02935at 51.084 kb on - strand, within HMPREF1058_RS02935at 51.168 kb on + strand, within HMPREF1058_RS02935at 51.186 kb on - strand, within HMPREF1058_RS02935at 51.206 kb on + strand, within HMPREF1058_RS02935at 51.291 kb on - strand, within HMPREF1058_RS02935at 51.294 kb on + strand, within HMPREF1058_RS02935at 51.386 kb on + strand, within HMPREF1058_RS02935at 51.386 kb on + strand, within HMPREF1058_RS02935at 51.390 kb on + strand, within HMPREF1058_RS02935at 51.391 kb on - strand, within HMPREF1058_RS02935at 51.393 kb on - strand, within HMPREF1058_RS02935

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
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48,007 + +0.4
48,078 - +3.0
48,123 + HMPREF1058_RS02945 0.11 -0.3
48,124 - HMPREF1058_RS02945 0.11 -0.6
48,126 - HMPREF1058_RS02945 0.12 +0.6
48,126 - HMPREF1058_RS02945 0.12 -1.8
48,126 - HMPREF1058_RS02945 0.12 -3.5
48,126 - HMPREF1058_RS02945 0.12 -0.5
48,241 + HMPREF1058_RS02945 0.24 -2.1
48,242 - HMPREF1058_RS02945 0.24 -0.6
48,297 - HMPREF1058_RS02945 0.30 -1.5
48,299 + HMPREF1058_RS02945 0.30 -0.7
48,323 - HMPREF1058_RS02945 0.33 +0.7
48,399 + HMPREF1058_RS02945 0.41 -0.3
48,465 - HMPREF1058_RS02945 0.49 +0.2
48,542 + HMPREF1058_RS02945 0.57 -1.5
48,543 - HMPREF1058_RS02945 0.57 -2.1
48,635 + HMPREF1058_RS02945 0.67 -1.6
48,678 - HMPREF1058_RS02945 0.72 -0.8
48,925 - -2.1
48,931 - -0.1
48,943 - +0.5
48,997 - -1.9
49,004 + -1.7
49,224 - HMPREF1058_RS02940 0.17 -0.4
49,224 - HMPREF1058_RS02940 0.17 +0.4
49,245 + -0.1
49,302 + HMPREF1058_RS02940 0.23 -2.1
49,303 - HMPREF1058_RS02940 0.23 -1.0
49,303 - HMPREF1058_RS02940 0.23 -0.5
49,331 + HMPREF1058_RS02940 0.25 -1.6
49,598 + HMPREF1058_RS02940 0.43 -0.9
49,608 + HMPREF1058_RS02940 0.44 -3.6
49,617 - HMPREF1058_RS02940 0.44 -3.1
49,617 - HMPREF1058_RS02940 0.44 -0.8
49,664 + HMPREF1058_RS02940 0.48 +0.3
49,700 - HMPREF1058_RS02940 0.50 +1.0
49,760 + HMPREF1058_RS02940 0.54 -2.1
49,806 - HMPREF1058_RS02940 0.57 -2.9
49,814 + HMPREF1058_RS02940 0.58 -0.6
49,815 - HMPREF1058_RS02940 0.58 -1.0
49,815 - HMPREF1058_RS02940 0.58 -2.1
49,815 - HMPREF1058_RS02940 0.58 -0.1
49,907 + HMPREF1058_RS02940 0.64 -0.6
49,908 - HMPREF1058_RS02940 0.64 -0.1
49,939 + HMPREF1058_RS02940 0.67 -0.6
49,940 - HMPREF1058_RS02940 0.67 -0.6
50,019 - HMPREF1058_RS02940 0.72 -0.1
50,044 + HMPREF1058_RS02940 0.74 +1.2
50,044 + HMPREF1058_RS02940 0.74 -1.9
50,045 - HMPREF1058_RS02940 0.74 -1.8
50,048 + HMPREF1058_RS02940 0.74 -0.2
50,055 - HMPREF1058_RS02940 0.74 -1.6
50,055 - HMPREF1058_RS02940 0.74 -2.4
50,163 - HMPREF1058_RS02940 0.82 -1.6
50,270 + HMPREF1058_RS02940 0.89 -0.8
50,272 + HMPREF1058_RS02940 0.89 -1.2
50,337 - -4.1
50,416 + +1.3
50,432 + +1.3
50,433 - -0.5
50,461 + -1.5
50,490 - -0.1
50,717 + HMPREF1058_RS02935 0.24 -1.5
50,718 - HMPREF1058_RS02935 0.24 -2.4
50,750 + HMPREF1058_RS02935 0.27 -1.1
50,751 - HMPREF1058_RS02935 0.27 -1.6
50,756 + HMPREF1058_RS02935 0.27 -1.4
50,761 - HMPREF1058_RS02935 0.28 +0.4
50,907 - HMPREF1058_RS02935 0.41 -2.9
50,917 - HMPREF1058_RS02935 0.42 +0.7
50,918 + HMPREF1058_RS02935 0.42 -0.4
50,918 + HMPREF1058_RS02935 0.42 -0.4
50,922 + HMPREF1058_RS02935 0.42 -1.5
50,922 + HMPREF1058_RS02935 0.42 -0.8
50,923 - HMPREF1058_RS02935 0.42 +0.4
51,023 + HMPREF1058_RS02935 0.51 -0.9
51,084 - HMPREF1058_RS02935 0.57 -0.1
51,168 + HMPREF1058_RS02935 0.64 -1.4
51,186 - HMPREF1058_RS02935 0.66 -2.2
51,206 + HMPREF1058_RS02935 0.68 -0.7
51,291 - HMPREF1058_RS02935 0.76 -0.1
51,294 + HMPREF1058_RS02935 0.76 -0.6
51,386 + HMPREF1058_RS02935 0.84 +0.4
51,386 + HMPREF1058_RS02935 0.84 -1.5
51,390 + HMPREF1058_RS02935 0.85 -0.3
51,391 - HMPREF1058_RS02935 0.85 -2.9
51,393 - HMPREF1058_RS02935 0.85 -0.1

Or see this region's nucleotide sequence