Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02465

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02470 and HMPREF1058_RS02465 overlap by 4 nucleotidesHMPREF1058_RS02465 and HMPREF1058_RS02460 overlap by 4 nucleotidesHMPREF1058_RS02460 and HMPREF1058_RS02455 are separated by 153 nucleotides HMPREF1058_RS02470: HMPREF1058_RS02470 - hypothetical protein, at 174,198 to 175,262 _RS02470 HMPREF1058_RS02465: HMPREF1058_RS02465 - hypothetical protein, at 175,259 to 175,837 _RS02465 HMPREF1058_RS02460: HMPREF1058_RS02460 - signal peptidase I, at 175,834 to 176,655 _RS02460 HMPREF1058_RS02455: HMPREF1058_RS02455 - hypothetical protein, at 176,809 to 177,351 _RS02455 Position (kb) 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 174.261 kb on - strandat 174.313 kb on - strand, within HMPREF1058_RS02470at 174.313 kb on - strand, within HMPREF1058_RS02470at 174.330 kb on - strand, within HMPREF1058_RS02470at 174.393 kb on - strand, within HMPREF1058_RS02470at 174.411 kb on - strand, within HMPREF1058_RS02470at 174.453 kb on - strand, within HMPREF1058_RS02470at 174.527 kb on + strand, within HMPREF1058_RS02470at 174.532 kb on + strand, within HMPREF1058_RS02470at 174.554 kb on + strand, within HMPREF1058_RS02470at 174.554 kb on + strand, within HMPREF1058_RS02470at 174.555 kb on - strand, within HMPREF1058_RS02470at 174.567 kb on + strand, within HMPREF1058_RS02470at 174.672 kb on + strand, within HMPREF1058_RS02470at 174.674 kb on + strand, within HMPREF1058_RS02470at 174.674 kb on + strand, within HMPREF1058_RS02470at 174.742 kb on + strand, within HMPREF1058_RS02470at 174.743 kb on - strand, within HMPREF1058_RS02470at 174.852 kb on - strand, within HMPREF1058_RS02470at 174.881 kb on + strand, within HMPREF1058_RS02470at 174.948 kb on + strand, within HMPREF1058_RS02470at 175.018 kb on - strand, within HMPREF1058_RS02470at 175.032 kb on + strand, within HMPREF1058_RS02470at 175.033 kb on - strand, within HMPREF1058_RS02470at 175.034 kb on + strand, within HMPREF1058_RS02470at 175.045 kb on + strand, within HMPREF1058_RS02470at 175.046 kb on - strand, within HMPREF1058_RS02470at 175.069 kb on - strand, within HMPREF1058_RS02470at 175.131 kb on + strand, within HMPREF1058_RS02470at 175.214 kb on + strandat 175.404 kb on + strand, within HMPREF1058_RS02465at 175.405 kb on - strand, within HMPREF1058_RS02465at 175.422 kb on + strand, within HMPREF1058_RS02465at 175.426 kb on + strand, within HMPREF1058_RS02465at 175.451 kb on + strand, within HMPREF1058_RS02465at 175.466 kb on + strand, within HMPREF1058_RS02465at 175.466 kb on + strand, within HMPREF1058_RS02465at 175.466 kb on + strand, within HMPREF1058_RS02465at 175.467 kb on - strand, within HMPREF1058_RS02465at 175.552 kb on + strand, within HMPREF1058_RS02465at 175.592 kb on - strand, within HMPREF1058_RS02465at 175.603 kb on - strand, within HMPREF1058_RS02465at 175.642 kb on - strand, within HMPREF1058_RS02465at 175.678 kb on + strand, within HMPREF1058_RS02465at 175.740 kb on + strand, within HMPREF1058_RS02465at 175.781 kb on + strandat 175.781 kb on + strandat 175.781 kb on + strandat 175.804 kb on + strandat 175.860 kb on + strandat 175.889 kb on + strandat 175.904 kb on + strandat 175.962 kb on + strand, within HMPREF1058_RS02460at 175.988 kb on + strand, within HMPREF1058_RS02460at 176.003 kb on + strand, within HMPREF1058_RS02460at 176.004 kb on - strand, within HMPREF1058_RS02460at 176.004 kb on - strand, within HMPREF1058_RS02460at 176.006 kb on + strand, within HMPREF1058_RS02460at 176.036 kb on + strand, within HMPREF1058_RS02460at 176.070 kb on + strand, within HMPREF1058_RS02460at 176.070 kb on + strand, within HMPREF1058_RS02460at 176.071 kb on - strand, within HMPREF1058_RS02460at 176.071 kb on - strand, within HMPREF1058_RS02460at 176.071 kb on - strand, within HMPREF1058_RS02460at 176.152 kb on - strand, within HMPREF1058_RS02460at 176.152 kb on - strand, within HMPREF1058_RS02460at 176.238 kb on + strand, within HMPREF1058_RS02460at 176.290 kb on + strand, within HMPREF1058_RS02460at 176.291 kb on - strand, within HMPREF1058_RS02460at 176.335 kb on + strand, within HMPREF1058_RS02460at 176.337 kb on + strand, within HMPREF1058_RS02460at 176.339 kb on + strand, within HMPREF1058_RS02460at 176.415 kb on + strand, within HMPREF1058_RS02460at 176.426 kb on + strand, within HMPREF1058_RS02460at 176.427 kb on - strand, within HMPREF1058_RS02460at 176.433 kb on + strand, within HMPREF1058_RS02460at 176.434 kb on - strand, within HMPREF1058_RS02460at 176.447 kb on - strand, within HMPREF1058_RS02460at 176.451 kb on + strand, within HMPREF1058_RS02460at 176.495 kb on - strand, within HMPREF1058_RS02460at 176.498 kb on - strand, within HMPREF1058_RS02460at 176.503 kb on - strand, within HMPREF1058_RS02460at 176.520 kb on - strand, within HMPREF1058_RS02460at 176.580 kb on - strandat 176.580 kb on - strandat 176.583 kb on - strandat 176.583 kb on - strandat 176.643 kb on + strandat 176.648 kb on + strandat 176.677 kb on + strandat 176.677 kb on + strandat 176.684 kb on - strandat 176.726 kb on + strandat 176.726 kb on + strandat 176.726 kb on + strandat 176.727 kb on - strandat 176.727 kb on - strandat 176.734 kb on - strandat 176.734 kb on - strandat 176.783 kb on + strandat 176.784 kb on - strandat 176.793 kb on + strandat 176.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
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174,261 - +2.0
174,313 - HMPREF1058_RS02470 0.11 +4.8
174,313 - HMPREF1058_RS02470 0.11 +1.1
174,330 - HMPREF1058_RS02470 0.12 -0.1
174,393 - HMPREF1058_RS02470 0.18 +1.0
174,411 - HMPREF1058_RS02470 0.20 +0.5
174,453 - HMPREF1058_RS02470 0.24 -0.5
174,527 + HMPREF1058_RS02470 0.31 +2.7
174,532 + HMPREF1058_RS02470 0.31 +2.3
174,554 + HMPREF1058_RS02470 0.33 -0.1
174,554 + HMPREF1058_RS02470 0.33 +1.0
174,555 - HMPREF1058_RS02470 0.34 -1.2
174,567 + HMPREF1058_RS02470 0.35 -1.8
174,672 + HMPREF1058_RS02470 0.45 -0.5
174,674 + HMPREF1058_RS02470 0.45 +2.8
174,674 + HMPREF1058_RS02470 0.45 +2.3
174,742 + HMPREF1058_RS02470 0.51 -0.6
174,743 - HMPREF1058_RS02470 0.51 -0.1
174,852 - HMPREF1058_RS02470 0.61 -0.6
174,881 + HMPREF1058_RS02470 0.64 +1.3
174,948 + HMPREF1058_RS02470 0.70 +0.2
175,018 - HMPREF1058_RS02470 0.77 -0.6
175,032 + HMPREF1058_RS02470 0.78 -0.6
175,033 - HMPREF1058_RS02470 0.78 -0.1
175,034 + HMPREF1058_RS02470 0.78 -0.1
175,045 + HMPREF1058_RS02470 0.80 +0.9
175,046 - HMPREF1058_RS02470 0.80 +0.9
175,069 - HMPREF1058_RS02470 0.82 -1.4
175,131 + HMPREF1058_RS02470 0.88 +0.9
175,214 + -0.2
175,404 + HMPREF1058_RS02465 0.25 -0.2
175,405 - HMPREF1058_RS02465 0.25 +1.2
175,422 + HMPREF1058_RS02465 0.28 +0.9
175,426 + HMPREF1058_RS02465 0.29 +0.7
175,451 + HMPREF1058_RS02465 0.33 +0.4
175,466 + HMPREF1058_RS02465 0.36 +0.4
175,466 + HMPREF1058_RS02465 0.36 -0.2
175,466 + HMPREF1058_RS02465 0.36 +1.0
175,467 - HMPREF1058_RS02465 0.36 +0.7
175,552 + HMPREF1058_RS02465 0.51 -1.1
175,592 - HMPREF1058_RS02465 0.58 -0.1
175,603 - HMPREF1058_RS02465 0.59 +0.5
175,642 - HMPREF1058_RS02465 0.66 +0.9
175,678 + HMPREF1058_RS02465 0.72 -0.6
175,740 + HMPREF1058_RS02465 0.83 -1.1
175,781 + -0.2
175,781 + +0.9
175,781 + +0.6
175,804 + +1.7
175,860 + +0.4
175,889 + -1.6
175,904 + -0.6
175,962 + HMPREF1058_RS02460 0.16 +0.0
175,988 + HMPREF1058_RS02460 0.19 -1.1
176,003 + HMPREF1058_RS02460 0.21 -1.1
176,004 - HMPREF1058_RS02460 0.21 -1.6
176,004 - HMPREF1058_RS02460 0.21 -1.3
176,006 + HMPREF1058_RS02460 0.21 -0.2
176,036 + HMPREF1058_RS02460 0.25 +1.7
176,070 + HMPREF1058_RS02460 0.29 +1.2
176,070 + HMPREF1058_RS02460 0.29 -0.7
176,071 - HMPREF1058_RS02460 0.29 -0.8
176,071 - HMPREF1058_RS02460 0.29 -0.2
176,071 - HMPREF1058_RS02460 0.29 +0.5
176,152 - HMPREF1058_RS02460 0.39 +0.7
176,152 - HMPREF1058_RS02460 0.39 -2.1
176,238 + HMPREF1058_RS02460 0.49 -0.6
176,290 + HMPREF1058_RS02460 0.55 +3.1
176,291 - HMPREF1058_RS02460 0.56 -3.2
176,335 + HMPREF1058_RS02460 0.61 -1.3
176,337 + HMPREF1058_RS02460 0.61 -1.1
176,339 + HMPREF1058_RS02460 0.61 +0.5
176,415 + HMPREF1058_RS02460 0.71 -2.6
176,426 + HMPREF1058_RS02460 0.72 +0.5
176,427 - HMPREF1058_RS02460 0.72 +1.9
176,433 + HMPREF1058_RS02460 0.73 -1.1
176,434 - HMPREF1058_RS02460 0.73 -1.6
176,447 - HMPREF1058_RS02460 0.75 +0.9
176,451 + HMPREF1058_RS02460 0.75 -0.1
176,495 - HMPREF1058_RS02460 0.80 +2.4
176,498 - HMPREF1058_RS02460 0.81 +3.0
176,503 - HMPREF1058_RS02460 0.81 +0.3
176,520 - HMPREF1058_RS02460 0.83 -0.1
176,580 - +1.8
176,580 - +0.9
176,583 - +0.9
176,583 - +1.7
176,643 + +2.6
176,648 + +1.5
176,677 + +4.6
176,677 + -3.3
176,684 - +0.9
176,726 + -0.1
176,726 + +0.2
176,726 + -0.1
176,727 - +0.0
176,727 - -0.9
176,734 - -2.1
176,734 - +0.8
176,783 + +1.0
176,784 - -2.1
176,793 + -0.7
176,796 + +0.7

Or see this region's nucleotide sequence