Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01175 and HMPREF1058_RS01170 are separated by 20 nucleotides HMPREF1058_RS01170 and HMPREF1058_RS01165 are separated by 13 nucleotides
HMPREF1058_RS01175: HMPREF1058_RS01175 - FtsX-like permease family protein, at 188,667 to 191,066
_RS01175
HMPREF1058_RS01170: HMPREF1058_RS01170 - ABC transporter permease, at 191,087 to 193,456
_RS01170
HMPREF1058_RS01165: HMPREF1058_RS01165 - ABC transporter permease, at 193,470 to 195,866
_RS01165
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 190.179 kb on + strand, within HMPREF1058_RS01175 at 190.201 kb on + strand, within HMPREF1058_RS01175 at 190.202 kb on - strand, within HMPREF1058_RS01175 at 190.253 kb on + strand, within HMPREF1058_RS01175 at 190.270 kb on + strand, within HMPREF1058_RS01175 at 190.271 kb on - strand, within HMPREF1058_RS01175 at 190.272 kb on + strand, within HMPREF1058_RS01175 at 190.272 kb on + strand, within HMPREF1058_RS01175 at 190.273 kb on - strand, within HMPREF1058_RS01175 at 190.273 kb on - strand, within HMPREF1058_RS01175 at 190.286 kb on + strand, within HMPREF1058_RS01175 at 190.338 kb on + strand, within HMPREF1058_RS01175 at 190.451 kb on + strand, within HMPREF1058_RS01175 at 190.471 kb on - strand, within HMPREF1058_RS01175 at 190.489 kb on + strand, within HMPREF1058_RS01175 at 190.490 kb on - strand, within HMPREF1058_RS01175 at 190.553 kb on + strand, within HMPREF1058_RS01175 at 190.554 kb on - strand, within HMPREF1058_RS01175 at 190.663 kb on - strand, within HMPREF1058_RS01175 at 190.677 kb on + strand, within HMPREF1058_RS01175 at 190.678 kb on - strand, within HMPREF1058_RS01175 at 190.951 kb on + strand at 190.961 kb on + strand at 190.964 kb on + strand at 190.964 kb on + strand at 190.971 kb on + strand at 190.992 kb on + strand at 191.053 kb on + strand at 191.054 kb on - strand at 191.067 kb on - strand at 191.147 kb on + strand at 191.162 kb on + strand at 191.162 kb on + strand at 191.169 kb on - strand at 191.169 kb on - strand at 191.186 kb on + strand at 191.202 kb on - strand at 191.242 kb on + strand at 191.246 kb on + strand at 191.256 kb on + strand at 191.269 kb on + strand at 191.300 kb on + strand at 191.302 kb on + strand at 191.303 kb on - strand at 191.325 kb on + strand, within HMPREF1058_RS01170 at 191.462 kb on - strand, within HMPREF1058_RS01170 at 191.486 kb on - strand, within HMPREF1058_RS01170 at 191.518 kb on + strand, within HMPREF1058_RS01170 at 191.548 kb on + strand, within HMPREF1058_RS01170 at 191.549 kb on - strand, within HMPREF1058_RS01170 at 191.549 kb on - strand, within HMPREF1058_RS01170 at 191.600 kb on - strand, within HMPREF1058_RS01170 at 191.600 kb on - strand, within HMPREF1058_RS01170 at 191.606 kb on + strand, within HMPREF1058_RS01170 at 191.646 kb on + strand, within HMPREF1058_RS01170 at 191.647 kb on - strand, within HMPREF1058_RS01170 at 191.654 kb on - strand, within HMPREF1058_RS01170 at 191.654 kb on - strand, within HMPREF1058_RS01170 at 191.654 kb on - strand, within HMPREF1058_RS01170 at 191.710 kb on + strand, within HMPREF1058_RS01170 at 191.879 kb on - strand, within HMPREF1058_RS01170 at 191.883 kb on + strand, within HMPREF1058_RS01170 at 192.026 kb on - strand, within HMPREF1058_RS01170 at 192.128 kb on + strand, within HMPREF1058_RS01170 at 192.224 kb on - strand, within HMPREF1058_RS01170 at 192.224 kb on - strand, within HMPREF1058_RS01170 at 192.225 kb on + strand, within HMPREF1058_RS01170 at 192.225 kb on + strand, within HMPREF1058_RS01170 at 192.247 kb on + strand, within HMPREF1058_RS01170 at 192.310 kb on - strand, within HMPREF1058_RS01170 at 192.325 kb on - strand, within HMPREF1058_RS01170 at 192.359 kb on + strand, within HMPREF1058_RS01170 at 192.365 kb on - strand, within HMPREF1058_RS01170 at 192.441 kb on - strand, within HMPREF1058_RS01170 at 192.465 kb on - strand, within HMPREF1058_RS01170 at 192.539 kb on + strand, within HMPREF1058_RS01170 at 192.635 kb on + strand, within HMPREF1058_RS01170 at 192.653 kb on + strand, within HMPREF1058_RS01170 at 192.683 kb on - strand, within HMPREF1058_RS01170 at 192.766 kb on - strand, within HMPREF1058_RS01170 at 192.770 kb on - strand, within HMPREF1058_RS01170 at 192.779 kb on + strand, within HMPREF1058_RS01170 at 192.780 kb on - strand, within HMPREF1058_RS01170 at 192.780 kb on - strand, within HMPREF1058_RS01170 at 192.805 kb on + strand, within HMPREF1058_RS01170 at 192.821 kb on - strand, within HMPREF1058_RS01170 at 192.883 kb on + strand, within HMPREF1058_RS01170 at 192.935 kb on + strand, within HMPREF1058_RS01170 at 192.971 kb on - strand, within HMPREF1058_RS01170 at 192.971 kb on - strand, within HMPREF1058_RS01170 at 192.971 kb on - strand, within HMPREF1058_RS01170 at 192.977 kb on + strand, within HMPREF1058_RS01170 at 192.977 kb on + strand, within HMPREF1058_RS01170 at 192.977 kb on + strand, within HMPREF1058_RS01170 at 193.079 kb on + strand, within HMPREF1058_RS01170 at 193.081 kb on + strand, within HMPREF1058_RS01170 at 193.139 kb on - strand, within HMPREF1058_RS01170 at 193.161 kb on + strand, within HMPREF1058_RS01170 at 193.162 kb on - strand, within HMPREF1058_RS01170 at 193.181 kb on - strand, within HMPREF1058_RS01170 at 193.182 kb on + strand, within HMPREF1058_RS01170 at 193.182 kb on + strand, within HMPREF1058_RS01170 at 193.183 kb on - strand, within HMPREF1058_RS01170 at 193.183 kb on - strand, within HMPREF1058_RS01170 at 193.192 kb on + strand, within HMPREF1058_RS01170 at 193.192 kb on + strand, within HMPREF1058_RS01170 at 193.193 kb on - strand, within HMPREF1058_RS01170 at 193.225 kb on + strand at 193.234 kb on + strand at 193.236 kb on + strand at 193.236 kb on + strand at 193.237 kb on - strand at 193.285 kb on + strand at 193.286 kb on - strand at 193.286 kb on - strand at 193.291 kb on - strand at 193.342 kb on + strand at 193.342 kb on + strand at 193.457 kb on - strand at 193.460 kb on + strand at 193.460 kb on + strand at 193.461 kb on - strand at 193.461 kb on - strand at 193.559 kb on + strand at 193.563 kb on + strand at 193.563 kb on + strand at 193.596 kb on + strand at 193.597 kb on - strand at 193.620 kb on - strand at 193.621 kb on + strand at 193.621 kb on + strand at 193.621 kb on + strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.622 kb on - strand at 193.625 kb on + strand at 193.625 kb on + strand at 193.626 kb on - strand at 193.626 kb on - strand at 193.628 kb on - strand at 193.628 kb on - strand at 193.628 kb on - strand at 193.629 kb on + strand at 193.629 kb on + strand at 193.630 kb on - strand at 193.674 kb on + strand at 193.688 kb on - strand at 193.795 kb on - strand, within HMPREF1058_RS01165 at 193.903 kb on + strand, within HMPREF1058_RS01165 at 193.903 kb on + strand, within HMPREF1058_RS01165 at 193.903 kb on + strand, within HMPREF1058_RS01165 at 193.903 kb on + strand, within HMPREF1058_RS01165 at 193.904 kb on - strand, within HMPREF1058_RS01165 at 193.904 kb on - strand, within HMPREF1058_RS01165 at 193.922 kb on + strand, within HMPREF1058_RS01165 at 193.926 kb on + strand, within HMPREF1058_RS01165 at 193.926 kb on + strand, within HMPREF1058_RS01165 at 193.951 kb on + strand, within HMPREF1058_RS01165 at 194.202 kb on - strand, within HMPREF1058_RS01165 at 194.226 kb on + strand, within HMPREF1058_RS01165 at 194.294 kb on - strand, within HMPREF1058_RS01165 at 194.295 kb on + strand, within HMPREF1058_RS01165 at 194.296 kb on - strand, within HMPREF1058_RS01165 at 194.358 kb on + strand, within HMPREF1058_RS01165 at 194.390 kb on + strand, within HMPREF1058_RS01165 at 194.390 kb on + strand, within HMPREF1058_RS01165 at 194.391 kb on - strand, within HMPREF1058_RS01165 at 194.439 kb on + strand, within HMPREF1058_RS01165
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 190,179 + HMPREF1058_RS01175 0.63 +0.2 190,201 + HMPREF1058_RS01175 0.64 -0.7 190,202 - HMPREF1058_RS01175 0.64 -1.3 190,253 + HMPREF1058_RS01175 0.66 +0.7 190,270 + HMPREF1058_RS01175 0.67 +1.2 190,271 - HMPREF1058_RS01175 0.67 -1.3 190,272 + HMPREF1058_RS01175 0.67 -0.9 190,272 + HMPREF1058_RS01175 0.67 +0.2 190,273 - HMPREF1058_RS01175 0.67 +2.4 190,273 - HMPREF1058_RS01175 0.67 -1.3 190,286 + HMPREF1058_RS01175 0.67 +0.1 190,338 + HMPREF1058_RS01175 0.70 +2.6 190,451 + HMPREF1058_RS01175 0.74 +0.2 190,471 - HMPREF1058_RS01175 0.75 -1.0 190,489 + HMPREF1058_RS01175 0.76 +2.8 190,490 - HMPREF1058_RS01175 0.76 +1.1 190,553 + HMPREF1058_RS01175 0.79 -0.3 190,554 - HMPREF1058_RS01175 0.79 +0.7 190,663 - HMPREF1058_RS01175 0.83 -0.4 190,677 + HMPREF1058_RS01175 0.84 -1.1 190,678 - HMPREF1058_RS01175 0.84 +2.2 190,951 + +2.1 190,961 + +0.2 190,964 + +1.4 190,964 + -0.5 190,971 + +0.8 190,992 + +1.2 191,053 + -0.6 191,054 - +0.5 191,067 - +1.5 191,147 + +0.2 191,162 + -1.8 191,162 + -0.8 191,169 - -0.8 191,169 - -0.8 191,186 + -0.8 191,202 - -1.8 191,242 + -2.8 191,246 + -3.1 191,256 + -1.2 191,269 + -2.1 191,300 + +2.8 191,302 + +0.2 191,303 - -0.8 191,325 + HMPREF1058_RS01170 0.10 -1.9 191,462 - HMPREF1058_RS01170 0.16 -3.1 191,486 - HMPREF1058_RS01170 0.17 -2.3 191,518 + HMPREF1058_RS01170 0.18 -1.3 191,548 + HMPREF1058_RS01170 0.19 +0.0 191,549 - HMPREF1058_RS01170 0.19 -1.3 191,549 - HMPREF1058_RS01170 0.19 +0.6 191,600 - HMPREF1058_RS01170 0.22 -0.9 191,600 - HMPREF1058_RS01170 0.22 -0.8 191,606 + HMPREF1058_RS01170 0.22 -0.8 191,646 + HMPREF1058_RS01170 0.24 -1.3 191,647 - HMPREF1058_RS01170 0.24 -1.3 191,654 - HMPREF1058_RS01170 0.24 -0.3 191,654 - HMPREF1058_RS01170 0.24 -2.1 191,654 - HMPREF1058_RS01170 0.24 -1.8 191,710 + HMPREF1058_RS01170 0.26 -2.8 191,879 - HMPREF1058_RS01170 0.33 -1.1 191,883 + HMPREF1058_RS01170 0.34 -0.3 192,026 - HMPREF1058_RS01170 0.40 -2.3 192,128 + HMPREF1058_RS01170 0.44 -3.2 192,224 - HMPREF1058_RS01170 0.48 +0.2 192,224 - HMPREF1058_RS01170 0.48 +0.5 192,225 + HMPREF1058_RS01170 0.48 -2.3 192,225 + HMPREF1058_RS01170 0.48 -2.9 192,247 + HMPREF1058_RS01170 0.49 +0.2 192,310 - HMPREF1058_RS01170 0.52 +1.2 192,325 - HMPREF1058_RS01170 0.52 -1.6 192,359 + HMPREF1058_RS01170 0.54 -3.7 192,365 - HMPREF1058_RS01170 0.54 -2.0 192,441 - HMPREF1058_RS01170 0.57 +0.2 192,465 - HMPREF1058_RS01170 0.58 -2.8 192,539 + HMPREF1058_RS01170 0.61 -0.8 192,635 + HMPREF1058_RS01170 0.65 -1.8 192,653 + HMPREF1058_RS01170 0.66 -1.0 192,683 - HMPREF1058_RS01170 0.67 -2.3 192,766 - HMPREF1058_RS01170 0.71 -1.3 192,770 - HMPREF1058_RS01170 0.71 -2.1 192,779 + HMPREF1058_RS01170 0.71 -1.3 192,780 - HMPREF1058_RS01170 0.71 -2.1 192,780 - HMPREF1058_RS01170 0.71 -1.8 192,805 + HMPREF1058_RS01170 0.72 -2.1 192,821 - HMPREF1058_RS01170 0.73 -0.6 192,883 + HMPREF1058_RS01170 0.76 +0.6 192,935 + HMPREF1058_RS01170 0.78 -1.3 192,971 - HMPREF1058_RS01170 0.79 -3.8 192,971 - HMPREF1058_RS01170 0.79 -1.3 192,971 - HMPREF1058_RS01170 0.79 -4.1 192,977 + HMPREF1058_RS01170 0.80 -2.8 192,977 + HMPREF1058_RS01170 0.80 -2.8 192,977 + HMPREF1058_RS01170 0.80 -1.8 193,079 + HMPREF1058_RS01170 0.84 -2.1 193,081 + HMPREF1058_RS01170 0.84 +1.5 193,139 - HMPREF1058_RS01170 0.87 -1.3 193,161 + HMPREF1058_RS01170 0.88 -3.1 193,162 - HMPREF1058_RS01170 0.88 -3.8 193,181 - HMPREF1058_RS01170 0.88 -4.1 193,182 + HMPREF1058_RS01170 0.88 -2.3 193,182 + HMPREF1058_RS01170 0.88 -3.8 193,183 - HMPREF1058_RS01170 0.88 -2.1 193,183 - HMPREF1058_RS01170 0.88 -1.3 193,192 + HMPREF1058_RS01170 0.89 +0.2 193,192 + HMPREF1058_RS01170 0.89 -3.1 193,193 - HMPREF1058_RS01170 0.89 -0.8 193,225 + -1.8 193,234 + -1.3 193,236 + -1.2 193,236 + +0.2 193,237 - -2.6 193,285 + -2.1 193,286 - -0.8 193,286 - -0.8 193,291 - -0.5 193,342 + -1.3 193,342 + -1.8 193,457 - -0.8 193,460 + -1.7 193,460 + -3.2 193,461 - +2.2 193,461 - -0.8 193,559 + -3.0 193,563 + -1.3 193,563 + -1.8 193,596 + -0.8 193,597 - +0.6 193,620 - -1.8 193,621 + -1.3 193,621 + -3.5 193,621 + -2.7 193,622 - -0.8 193,622 - -0.4 193,622 - +0.2 193,622 - +0.2 193,622 - +0.6 193,622 - -1.0 193,622 - -1.3 193,622 - -0.0 193,622 - +0.2 193,625 + +0.1 193,625 + +0.2 193,626 - +0.2 193,626 - +0.2 193,628 - +0.0 193,628 - -2.6 193,628 - -0.2 193,629 + -3.2 193,629 + -4.1 193,630 - +0.2 193,674 + -0.6 193,688 - -0.8 193,795 - HMPREF1058_RS01165 0.14 +0.6 193,903 + HMPREF1058_RS01165 0.18 -1.8 193,903 + HMPREF1058_RS01165 0.18 -3.8 193,903 + HMPREF1058_RS01165 0.18 -3.5 193,903 + HMPREF1058_RS01165 0.18 -0.8 193,904 - HMPREF1058_RS01165 0.18 +0.3 193,904 - HMPREF1058_RS01165 0.18 +0.1 193,922 + HMPREF1058_RS01165 0.19 -2.6 193,926 + HMPREF1058_RS01165 0.19 -2.8 193,926 + HMPREF1058_RS01165 0.19 -1.1 193,951 + HMPREF1058_RS01165 0.20 +0.1 194,202 - HMPREF1058_RS01165 0.31 -1.3 194,226 + HMPREF1058_RS01165 0.32 -3.2 194,294 - HMPREF1058_RS01165 0.34 -0.3 194,295 + HMPREF1058_RS01165 0.34 -4.7 194,296 - HMPREF1058_RS01165 0.34 +1.5 194,358 + HMPREF1058_RS01165 0.37 -0.2 194,390 + HMPREF1058_RS01165 0.38 -3.5 194,390 + HMPREF1058_RS01165 0.38 -0.8 194,391 - HMPREF1058_RS01165 0.38 +1.4 194,439 + HMPREF1058_RS01165 0.40 -0.8
Or see this region's nucleotide sequence