Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01150 and HMPREF1058_RS01145 are separated by 223 nucleotides HMPREF1058_RS01145 and HMPREF1058_RS01140 overlap by 4 nucleotides
HMPREF1058_RS01150: HMPREF1058_RS01150 - sel1 repeat family protein, at 198,730 to 199,653
_RS01150
HMPREF1058_RS01145: HMPREF1058_RS01145 - sigma-54-dependent Fis family transcriptional regulator, at 199,877 to 201,244
_RS01145
HMPREF1058_RS01140: HMPREF1058_RS01140 - ATP-binding protein, at 201,241 to 202,572
_RS01140
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 198.995 kb on + strand, within HMPREF1058_RS01150 at 199.008 kb on + strand, within HMPREF1058_RS01150 at 199.013 kb on + strand, within HMPREF1058_RS01150 at 199.013 kb on + strand, within HMPREF1058_RS01150 at 199.106 kb on - strand, within HMPREF1058_RS01150 at 199.106 kb on - strand, within HMPREF1058_RS01150 at 199.137 kb on + strand, within HMPREF1058_RS01150 at 199.156 kb on + strand, within HMPREF1058_RS01150 at 199.156 kb on + strand, within HMPREF1058_RS01150 at 199.157 kb on - strand at 199.161 kb on - strand, within HMPREF1058_RS01150 at 199.210 kb on - strand, within HMPREF1058_RS01150 at 199.313 kb on + strand, within HMPREF1058_RS01150 at 199.313 kb on + strand, within HMPREF1058_RS01150 at 199.319 kb on + strand, within HMPREF1058_RS01150 at 199.324 kb on - strand, within HMPREF1058_RS01150 at 199.324 kb on - strand, within HMPREF1058_RS01150 at 199.324 kb on - strand at 199.330 kb on + strand, within HMPREF1058_RS01150 at 199.331 kb on - strand, within HMPREF1058_RS01150 at 199.423 kb on + strand, within HMPREF1058_RS01150 at 199.428 kb on - strand, within HMPREF1058_RS01150 at 199.564 kb on + strand at 199.566 kb on + strand at 199.566 kb on + strand at 199.569 kb on - strand at 199.575 kb on + strand at 199.576 kb on - strand at 199.577 kb on + strand at 199.603 kb on + strand at 199.604 kb on - strand at 199.612 kb on + strand at 199.612 kb on + strand at 199.615 kb on - strand at 199.633 kb on + strand at 199.634 kb on - strand at 199.658 kb on + strand at 199.659 kb on - strand at 199.662 kb on - strand at 199.662 kb on - strand at 199.663 kb on + strand at 199.666 kb on + strand at 199.703 kb on + strand at 199.849 kb on + strand at 199.855 kb on - strand at 199.861 kb on + strand at 200.029 kb on + strand, within HMPREF1058_RS01145 at 200.030 kb on - strand, within HMPREF1058_RS01145 at 200.104 kb on - strand, within HMPREF1058_RS01145 at 200.135 kb on - strand, within HMPREF1058_RS01145 at 200.405 kb on - strand, within HMPREF1058_RS01145 at 200.495 kb on - strand, within HMPREF1058_RS01145 at 200.517 kb on + strand, within HMPREF1058_RS01145 at 200.517 kb on + strand, within HMPREF1058_RS01145 at 200.569 kb on + strand, within HMPREF1058_RS01145 at 200.569 kb on + strand, within HMPREF1058_RS01145 at 200.570 kb on - strand, within HMPREF1058_RS01145 at 200.660 kb on - strand, within HMPREF1058_RS01145 at 200.660 kb on - strand, within HMPREF1058_RS01145 at 200.660 kb on - strand, within HMPREF1058_RS01145 at 200.723 kb on - strand, within HMPREF1058_RS01145 at 200.724 kb on + strand, within HMPREF1058_RS01145 at 200.764 kb on - strand, within HMPREF1058_RS01145 at 200.813 kb on + strand, within HMPREF1058_RS01145 at 200.818 kb on + strand, within HMPREF1058_RS01145 at 200.820 kb on - strand, within HMPREF1058_RS01145 at 200.911 kb on + strand, within HMPREF1058_RS01145 at 200.911 kb on + strand, within HMPREF1058_RS01145 at 201.123 kb on + strand at 201.241 kb on - strand at 201.276 kb on + strand at 201.281 kb on + strand at 201.282 kb on - strand at 201.301 kb on - strand at 201.373 kb on - strand at 201.382 kb on + strand, within HMPREF1058_RS01140 at 201.383 kb on - strand, within HMPREF1058_RS01140 at 201.385 kb on - strand, within HMPREF1058_RS01140 at 201.439 kb on - strand, within HMPREF1058_RS01140 at 201.540 kb on + strand, within HMPREF1058_RS01140 at 201.637 kb on - strand, within HMPREF1058_RS01140 at 201.638 kb on + strand, within HMPREF1058_RS01140 at 201.638 kb on + strand, within HMPREF1058_RS01140 at 201.639 kb on - strand, within HMPREF1058_RS01140 at 201.732 kb on + strand, within HMPREF1058_RS01140 at 201.732 kb on + strand, within HMPREF1058_RS01140 at 201.781 kb on - strand, within HMPREF1058_RS01140 at 201.781 kb on - strand, within HMPREF1058_RS01140 at 201.781 kb on - strand, within HMPREF1058_RS01140 at 201.789 kb on + strand, within HMPREF1058_RS01140 at 201.789 kb on + strand, within HMPREF1058_RS01140 at 201.789 kb on + strand, within HMPREF1058_RS01140 at 201.790 kb on - strand, within HMPREF1058_RS01140 at 201.790 kb on - strand, within HMPREF1058_RS01140 at 201.792 kb on + strand, within HMPREF1058_RS01140 at 201.823 kb on + strand, within HMPREF1058_RS01140 at 201.870 kb on + strand, within HMPREF1058_RS01140 at 201.870 kb on + strand, within HMPREF1058_RS01140 at 201.942 kb on - strand, within HMPREF1058_RS01140 at 201.964 kb on - strand, within HMPREF1058_RS01140 at 202.053 kb on + strand, within HMPREF1058_RS01140 at 202.060 kb on - strand, within HMPREF1058_RS01140 at 202.144 kb on - strand, within HMPREF1058_RS01140 at 202.146 kb on - strand, within HMPREF1058_RS01140 at 202.200 kb on + strand, within HMPREF1058_RS01140 at 202.200 kb on + strand, within HMPREF1058_RS01140 at 202.201 kb on - strand, within HMPREF1058_RS01140 at 202.203 kb on - strand, within HMPREF1058_RS01140 at 202.204 kb on + strand, within HMPREF1058_RS01140 at 202.205 kb on - strand, within HMPREF1058_RS01140 at 202.205 kb on - strand, within HMPREF1058_RS01140 at 202.206 kb on + strand, within HMPREF1058_RS01140 at 202.207 kb on - strand, within HMPREF1058_RS01140 at 202.207 kb on - strand, within HMPREF1058_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 remove 198,995 + HMPREF1058_RS01150 0.29 -0.8 199,008 + HMPREF1058_RS01150 0.30 +1.8 199,013 + HMPREF1058_RS01150 0.31 +0.2 199,013 + HMPREF1058_RS01150 0.31 -0.8 199,106 - HMPREF1058_RS01150 0.41 -1.8 199,106 - HMPREF1058_RS01150 0.41 +0.2 199,137 + HMPREF1058_RS01150 0.44 -1.8 199,156 + HMPREF1058_RS01150 0.46 +0.2 199,156 + HMPREF1058_RS01150 0.46 -1.3 199,157 - -0.8 199,161 - HMPREF1058_RS01150 0.47 +0.5 199,210 - HMPREF1058_RS01150 0.52 +0.0 199,313 + HMPREF1058_RS01150 0.63 -0.2 199,313 + HMPREF1058_RS01150 0.63 -2.8 199,319 + HMPREF1058_RS01150 0.64 -1.3 199,324 - HMPREF1058_RS01150 0.64 +0.2 199,324 - HMPREF1058_RS01150 0.64 -1.1 199,324 - -0.8 199,330 + HMPREF1058_RS01150 0.65 -2.7 199,331 - HMPREF1058_RS01150 0.65 -1.3 199,423 + HMPREF1058_RS01150 0.75 -3.7 199,428 - HMPREF1058_RS01150 0.76 +0.5 199,564 + -2.3 199,566 + -1.8 199,566 + -2.3 199,569 - -0.8 199,575 + -1.8 199,576 - -0.3 199,577 + -0.8 199,603 + -1.8 199,604 - +0.2 199,612 + +0.2 199,612 + -1.8 199,615 - +0.8 199,633 + -1.3 199,634 - -0.3 199,658 + -0.8 199,659 - -0.2 199,662 - -0.3 199,662 - -1.8 199,663 + -1.8 199,666 + -2.8 199,703 + -0.8 199,849 + +1.2 199,855 - -0.3 199,861 + -3.3 200,029 + HMPREF1058_RS01145 0.11 +0.2 200,030 - HMPREF1058_RS01145 0.11 -2.1 200,104 - HMPREF1058_RS01145 0.17 -3.0 200,135 - HMPREF1058_RS01145 0.19 -0.4 200,405 - HMPREF1058_RS01145 0.39 -0.3 200,495 - HMPREF1058_RS01145 0.45 -0.8 200,517 + HMPREF1058_RS01145 0.47 -2.6 200,517 + HMPREF1058_RS01145 0.47 -3.2 200,569 + HMPREF1058_RS01145 0.51 -2.8 200,569 + HMPREF1058_RS01145 0.51 -2.8 200,570 - HMPREF1058_RS01145 0.51 -2.1 200,660 - HMPREF1058_RS01145 0.57 -2.1 200,660 - HMPREF1058_RS01145 0.57 -3.5 200,660 - HMPREF1058_RS01145 0.57 -3.2 200,723 - HMPREF1058_RS01145 0.62 -2.1 200,724 + HMPREF1058_RS01145 0.62 +0.2 200,764 - HMPREF1058_RS01145 0.65 -2.9 200,813 + HMPREF1058_RS01145 0.68 -0.8 200,818 + HMPREF1058_RS01145 0.69 -2.0 200,820 - HMPREF1058_RS01145 0.69 +0.2 200,911 + HMPREF1058_RS01145 0.76 +1.2 200,911 + HMPREF1058_RS01145 0.76 -3.1 201,123 + -2.1 201,241 - -2.9 201,276 + -0.8 201,281 + -2.1 201,282 - +0.2 201,301 - -3.8 201,373 - +0.2 201,382 + HMPREF1058_RS01140 0.11 -2.8 201,383 - HMPREF1058_RS01140 0.11 +0.2 201,385 - HMPREF1058_RS01140 0.11 -1.2 201,439 - HMPREF1058_RS01140 0.15 +0.2 201,540 + HMPREF1058_RS01140 0.22 -0.3 201,637 - HMPREF1058_RS01140 0.30 -0.8 201,638 + HMPREF1058_RS01140 0.30 -2.3 201,638 + HMPREF1058_RS01140 0.30 +2.6 201,639 - HMPREF1058_RS01140 0.30 -0.8 201,732 + HMPREF1058_RS01140 0.37 -0.2 201,732 + HMPREF1058_RS01140 0.37 -2.3 201,781 - HMPREF1058_RS01140 0.41 -3.1 201,781 - HMPREF1058_RS01140 0.41 -0.8 201,781 - HMPREF1058_RS01140 0.41 +1.7 201,789 + HMPREF1058_RS01140 0.41 -0.8 201,789 + HMPREF1058_RS01140 0.41 -1.3 201,789 + HMPREF1058_RS01140 0.41 -0.2 201,790 - HMPREF1058_RS01140 0.41 -0.2 201,790 - HMPREF1058_RS01140 0.41 -1.8 201,792 + HMPREF1058_RS01140 0.41 -1.6 201,823 + HMPREF1058_RS01140 0.44 -4.5 201,870 + HMPREF1058_RS01140 0.47 -0.1 201,870 + HMPREF1058_RS01140 0.47 -0.2 201,942 - HMPREF1058_RS01140 0.53 +0.2 201,964 - HMPREF1058_RS01140 0.54 -0.8 202,053 + HMPREF1058_RS01140 0.61 -2.3 202,060 - HMPREF1058_RS01140 0.61 -0.2 202,144 - HMPREF1058_RS01140 0.68 -2.9 202,146 - HMPREF1058_RS01140 0.68 -2.2 202,200 + HMPREF1058_RS01140 0.72 -0.6 202,200 + HMPREF1058_RS01140 0.72 -3.7 202,201 - HMPREF1058_RS01140 0.72 +0.7 202,203 - HMPREF1058_RS01140 0.72 -1.6 202,204 + HMPREF1058_RS01140 0.72 -0.3 202,205 - HMPREF1058_RS01140 0.72 -0.6 202,205 - HMPREF1058_RS01140 0.72 +0.2 202,206 + HMPREF1058_RS01140 0.72 -0.0 202,207 - HMPREF1058_RS01140 0.73 -0.8 202,207 - HMPREF1058_RS01140 0.73 -1.8
Or see this region's nucleotide sequence