Experiment: 7H9 with Antimycin A 0.0186 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0792c and Rv0793 are separated by 72 nucleotides Rv0793 and Rv0794c are separated by 112 nucleotides Rv0794c and Rv0795 are separated by 435 nucleotides Rv0795 and Rv0796 overlap by 52 nucleotides
Rv0792c: Rv0792c - Probable transcriptional regulatory protein (probably GntR-family), at 885,837 to 886,646
Rv0792c
Rv0793: Rv0793 - Possible monooxygenase, at 886,719 to 887,024
Rv0793
Rv0794c: Rv0794c - Probable oxidoreductase, at 887,137 to 888,636
Rv0794c
Rv0795: Rv0795 - Putative transposase for insertion sequence element IS6110 (fragment), at 889,072 to 889,398
Rv0795
Rv0796: Rv0796 - Putative transposase for insertion sequence element IS6110, at 889,347 to 890,333
Rv0796
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 886.232 kb on + strand, within Rv0792c at 886.320 kb on - strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.400 kb on + strand, within Rv0792c at 886.423 kb on - strand, within Rv0792c at 886.835 kb on + strand, within Rv0793 at 886.836 kb on - strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.839 kb on + strand, within Rv0793 at 886.840 kb on - strand, within Rv0793 at 886.935 kb on + strand, within Rv0793 at 886.936 kb on - strand, within Rv0793 at 886.944 kb on + strand, within Rv0793 at 886.944 kb on + strand, within Rv0793 at 886.944 kb on + strand, within Rv0793 at 887.138 kb on + strand at 887.613 kb on - strand, within Rv0794c at 887.738 kb on - strand, within Rv0794c at 887.791 kb on + strand, within Rv0794c at 887.791 kb on + strand, within Rv0794c at 888.072 kb on + strand, within Rv0794c at 888.072 kb on + strand, within Rv0794c at 888.320 kb on + strand, within Rv0794c at 888.455 kb on + strand, within Rv0794c at 888.572 kb on + strand at 888.636 kb on + strand at 888.760 kb on + strand at 888.760 kb on + strand at 888.901 kb on + strand at 888.902 kb on - strand at 888.913 kb on + strand at 888.944 kb on + strand at 888.945 kb on - strand at 888.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Antimycin A 0.0186 mM remove 886,232 + Rv0792c 0.49 -0.1 886,320 - Rv0792c 0.60 -1.5 886,400 + Rv0792c 0.70 -1.0 886,400 + Rv0792c 0.70 +0.1 886,400 + Rv0792c 0.70 +1.1 886,423 - Rv0792c 0.72 -0.1 886,835 + Rv0793 0.38 -0.6 886,836 - Rv0793 0.38 +0.2 886,839 + Rv0793 0.39 -0.4 886,839 + Rv0793 0.39 +0.5 886,839 + Rv0793 0.39 -0.5 886,839 + Rv0793 0.39 -1.4 886,840 - Rv0793 0.40 -0.1 886,935 + Rv0793 0.71 +0.4 886,936 - Rv0793 0.71 -0.4 886,944 + Rv0793 0.74 -1.0 886,944 + Rv0793 0.74 +3.0 886,944 + Rv0793 0.74 -0.1 887,138 + +0.2 887,613 - Rv0794c 0.32 -0.5 887,738 - Rv0794c 0.40 -0.5 887,791 + Rv0794c 0.44 -0.7 887,791 + Rv0794c 0.44 -0.4 888,072 + Rv0794c 0.62 -0.3 888,072 + Rv0794c 0.62 -1.9 888,320 + Rv0794c 0.79 +0.0 888,455 + Rv0794c 0.88 -0.7 888,572 + -0.4 888,636 + +1.2 888,760 + +0.4 888,760 + -1.5 888,901 + +0.2 888,902 - -1.6 888,913 + +0.5 888,944 + -0.6 888,945 - -0.9 888,945 - -0.4
Or see this region's nucleotide sequence