Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09725 and HMPREF1058_RS09720 overlap by 4 nucleotides HMPREF1058_RS09720 and HMPREF1058_RS09715 are separated by 90 nucleotides HMPREF1058_RS09715 and HMPREF1058_RS09710 are separated by 22 nucleotides
HMPREF1058_RS09725: HMPREF1058_RS09725 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 809,494 to 810,594
_RS09725
HMPREF1058_RS09720: HMPREF1058_RS09720 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 810,591 to 812,396
_RS09720
HMPREF1058_RS09715: HMPREF1058_RS09715 - hypothetical protein, at 812,487 to 813,317
_RS09715
HMPREF1058_RS09710: HMPREF1058_RS09710 - acyltransferase, at 813,340 to 814,365
_RS09710
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 809.597 kb on - strand at 809.597 kb on - strand at 809.617 kb on + strand, within HMPREF1058_RS09725 at 809.618 kb on - strand, within HMPREF1058_RS09725 at 809.623 kb on - strand, within HMPREF1058_RS09725 at 809.788 kb on + strand, within HMPREF1058_RS09725 at 809.942 kb on + strand, within HMPREF1058_RS09725 at 809.943 kb on - strand, within HMPREF1058_RS09725 at 810.083 kb on - strand, within HMPREF1058_RS09725 at 810.083 kb on - strand, within HMPREF1058_RS09725 at 810.107 kb on - strand, within HMPREF1058_RS09725 at 810.139 kb on + strand, within HMPREF1058_RS09725 at 810.186 kb on - strand, within HMPREF1058_RS09725 at 810.247 kb on + strand, within HMPREF1058_RS09725 at 810.251 kb on - strand, within HMPREF1058_RS09725 at 810.329 kb on - strand, within HMPREF1058_RS09725 at 810.445 kb on - strand, within HMPREF1058_RS09725 at 810.469 kb on + strand, within HMPREF1058_RS09725 at 810.470 kb on - strand, within HMPREF1058_RS09725 at 810.535 kb on + strand at 810.535 kb on + strand at 810.535 kb on + strand at 810.583 kb on - strand at 810.583 kb on - strand at 810.625 kb on + strand at 810.664 kb on + strand at 810.766 kb on - strand at 810.799 kb on - strand, within HMPREF1058_RS09720 at 810.828 kb on + strand, within HMPREF1058_RS09720 at 810.829 kb on - strand, within HMPREF1058_RS09720 at 810.887 kb on + strand, within HMPREF1058_RS09720 at 810.892 kb on + strand, within HMPREF1058_RS09720 at 810.892 kb on + strand, within HMPREF1058_RS09720 at 810.904 kb on - strand, within HMPREF1058_RS09720 at 810.943 kb on - strand, within HMPREF1058_RS09720 at 810.943 kb on - strand, within HMPREF1058_RS09720 at 810.970 kb on - strand, within HMPREF1058_RS09720 at 810.972 kb on + strand, within HMPREF1058_RS09720 at 810.972 kb on + strand, within HMPREF1058_RS09720 at 811.008 kb on + strand, within HMPREF1058_RS09720 at 811.038 kb on - strand, within HMPREF1058_RS09720 at 811.064 kb on - strand, within HMPREF1058_RS09720 at 811.064 kb on - strand, within HMPREF1058_RS09720 at 811.086 kb on - strand, within HMPREF1058_RS09720 at 811.095 kb on - strand, within HMPREF1058_RS09720 at 811.143 kb on + strand, within HMPREF1058_RS09720 at 811.143 kb on + strand, within HMPREF1058_RS09720 at 811.143 kb on + strand, within HMPREF1058_RS09720 at 811.151 kb on + strand, within HMPREF1058_RS09720 at 811.240 kb on - strand, within HMPREF1058_RS09720 at 811.289 kb on + strand, within HMPREF1058_RS09720 at 811.370 kb on - strand, within HMPREF1058_RS09720 at 811.375 kb on - strand, within HMPREF1058_RS09720 at 811.542 kb on + strand, within HMPREF1058_RS09720 at 811.584 kb on + strand, within HMPREF1058_RS09720 at 811.699 kb on - strand, within HMPREF1058_RS09720 at 811.782 kb on + strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.793 kb on - strand, within HMPREF1058_RS09720 at 811.844 kb on - strand, within HMPREF1058_RS09720 at 811.874 kb on + strand, within HMPREF1058_RS09720 at 811.881 kb on - strand, within HMPREF1058_RS09720 at 811.894 kb on + strand, within HMPREF1058_RS09720 at 811.897 kb on + strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 812.000 kb on - strand, within HMPREF1058_RS09720 at 812.008 kb on - strand, within HMPREF1058_RS09720 at 812.058 kb on - strand, within HMPREF1058_RS09720 at 812.135 kb on - strand, within HMPREF1058_RS09720 at 812.138 kb on + strand, within HMPREF1058_RS09720 at 812.141 kb on + strand, within HMPREF1058_RS09720 at 812.218 kb on - strand at 812.239 kb on - strand at 812.250 kb on - strand at 812.346 kb on - strand at 812.380 kb on - strand at 812.399 kb on + strand at 812.411 kb on + strand at 812.412 kb on - strand at 812.413 kb on + strand at 812.413 kb on + strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.416 kb on - strand at 812.430 kb on - strand at 812.445 kb on - strand at 812.457 kb on - strand at 812.463 kb on - strand at 812.585 kb on - strand, within HMPREF1058_RS09715 at 812.629 kb on - strand, within HMPREF1058_RS09715 at 812.647 kb on + strand, within HMPREF1058_RS09715 at 812.691 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.860 kb on - strand, within HMPREF1058_RS09715 at 813.008 kb on + strand, within HMPREF1058_RS09715 at 813.190 kb on + strand, within HMPREF1058_RS09715 at 813.213 kb on + strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.228 kb on - strand, within HMPREF1058_RS09715 at 813.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 remove 809,597 - +0.1 809,597 - +0.4 809,617 + HMPREF1058_RS09725 0.11 -0.2 809,618 - HMPREF1058_RS09725 0.11 -1.9 809,623 - HMPREF1058_RS09725 0.12 -0.1 809,788 + HMPREF1058_RS09725 0.27 -3.4 809,942 + HMPREF1058_RS09725 0.41 -4.8 809,943 - HMPREF1058_RS09725 0.41 -1.2 810,083 - HMPREF1058_RS09725 0.53 -1.7 810,083 - HMPREF1058_RS09725 0.53 +0.8 810,107 - HMPREF1058_RS09725 0.56 -1.7 810,139 + HMPREF1058_RS09725 0.59 -2.7 810,186 - HMPREF1058_RS09725 0.63 +0.3 810,247 + HMPREF1058_RS09725 0.68 -3.7 810,251 - HMPREF1058_RS09725 0.69 +0.3 810,329 - HMPREF1058_RS09725 0.76 -2.9 810,445 - HMPREF1058_RS09725 0.86 -3.4 810,469 + HMPREF1058_RS09725 0.89 -1.8 810,470 - HMPREF1058_RS09725 0.89 -2.7 810,535 + -5.0 810,535 + -1.8 810,535 + -1.8 810,583 - -2.1 810,583 - -1.8 810,625 + -4.2 810,664 + -4.1 810,766 - +1.7 810,799 - HMPREF1058_RS09720 0.12 +1.1 810,828 + HMPREF1058_RS09720 0.13 -3.8 810,829 - HMPREF1058_RS09720 0.13 +0.5 810,887 + HMPREF1058_RS09720 0.16 -3.1 810,892 + HMPREF1058_RS09720 0.17 -5.4 810,892 + HMPREF1058_RS09720 0.17 +0.2 810,904 - HMPREF1058_RS09720 0.17 -0.8 810,943 - HMPREF1058_RS09720 0.19 -1.7 810,943 - HMPREF1058_RS09720 0.19 -1.8 810,970 - HMPREF1058_RS09720 0.21 +0.7 810,972 + HMPREF1058_RS09720 0.21 -4.5 810,972 + HMPREF1058_RS09720 0.21 -1.3 811,008 + HMPREF1058_RS09720 0.23 -3.8 811,038 - HMPREF1058_RS09720 0.25 +0.8 811,064 - HMPREF1058_RS09720 0.26 +0.6 811,064 - HMPREF1058_RS09720 0.26 -3.8 811,086 - HMPREF1058_RS09720 0.27 +0.1 811,095 - HMPREF1058_RS09720 0.28 +1.2 811,143 + HMPREF1058_RS09720 0.31 -4.6 811,143 + HMPREF1058_RS09720 0.31 -3.3 811,143 + HMPREF1058_RS09720 0.31 -3.1 811,151 + HMPREF1058_RS09720 0.31 -3.7 811,240 - HMPREF1058_RS09720 0.36 -1.5 811,289 + HMPREF1058_RS09720 0.39 -5.0 811,370 - HMPREF1058_RS09720 0.43 +3.2 811,375 - HMPREF1058_RS09720 0.43 -2.3 811,542 + HMPREF1058_RS09720 0.53 -3.0 811,584 + HMPREF1058_RS09720 0.55 -4.0 811,699 - HMPREF1058_RS09720 0.61 -0.8 811,782 + HMPREF1058_RS09720 0.66 -3.3 811,783 - HMPREF1058_RS09720 0.66 +1.9 811,783 - HMPREF1058_RS09720 0.66 +0.2 811,793 - HMPREF1058_RS09720 0.67 +0.3 811,844 - HMPREF1058_RS09720 0.69 -1.4 811,874 + HMPREF1058_RS09720 0.71 -4.1 811,881 - HMPREF1058_RS09720 0.71 -0.7 811,894 + HMPREF1058_RS09720 0.72 -3.8 811,897 + HMPREF1058_RS09720 0.72 -1.8 811,898 - HMPREF1058_RS09720 0.72 -1.3 811,898 - HMPREF1058_RS09720 0.72 +0.1 811,999 + HMPREF1058_RS09720 0.78 -3.8 811,999 + HMPREF1058_RS09720 0.78 -5.1 812,000 - HMPREF1058_RS09720 0.78 -0.3 812,008 - HMPREF1058_RS09720 0.78 +1.4 812,058 - HMPREF1058_RS09720 0.81 -1.7 812,135 - HMPREF1058_RS09720 0.85 -0.8 812,138 + HMPREF1058_RS09720 0.86 -1.3 812,141 + HMPREF1058_RS09720 0.86 -2.3 812,218 - +0.3 812,239 - +0.4 812,250 - -0.8 812,346 - +0.0 812,380 - -0.9 812,399 + -4.5 812,411 + -4.1 812,412 - +2.1 812,413 + -4.1 812,413 + -3.6 812,414 - +0.4 812,414 - +3.1 812,414 - -0.7 812,414 - -1.3 812,414 - -0.2 812,414 - -1.2 812,414 - +0.1 812,416 - +0.8 812,430 - -1.1 812,445 - -1.7 812,457 - +0.1 812,463 - +0.6 812,585 - HMPREF1058_RS09715 0.12 -1.1 812,629 - HMPREF1058_RS09715 0.17 +0.8 812,647 + HMPREF1058_RS09715 0.19 +0.9 812,691 + HMPREF1058_RS09715 0.25 +0.0 812,786 + HMPREF1058_RS09715 0.36 -1.0 812,786 + HMPREF1058_RS09715 0.36 -0.9 812,860 - HMPREF1058_RS09715 0.45 -0.8 813,008 + HMPREF1058_RS09715 0.63 +0.2 813,190 + HMPREF1058_RS09715 0.85 +0.1 813,213 + HMPREF1058_RS09715 0.87 +0.8 813,214 - HMPREF1058_RS09715 0.87 +0.3 813,214 - HMPREF1058_RS09715 0.87 +0.4 813,214 - HMPREF1058_RS09715 0.87 -0.2 813,227 + HMPREF1058_RS09715 0.89 -0.2 813,227 + HMPREF1058_RS09715 0.89 -0.6 813,228 - HMPREF1058_RS09715 0.89 -1.6 813,238 + +0.2
Or see this region's nucleotide sequence