Experiment: 7H9 with Phenazine ethosulfate 0.0137 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0564c and Rv0565c are separated by 60 nucleotides Rv0565c and Rv0566c are separated by 77 nucleotides Rv0566c and GFF587 are separated by 69 nucleotides GFF587 and Rv0567 are separated by 131 nucleotides
Rv0564c: Rv0564c - Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase), at 654,924 to 655,949
Rv0564c
Rv0565c: Rv0565c - Probable monooxygenase, at 656,010 to 657,470
Rv0565c
Rv0566c: Rv0566c - Conserved protein, at 657,548 to 658,039
Rv0566c
GFF587 - tRNA-Tyr, at 658,109 to 658,189
GFF587
Rv0567: Rv0567 - Probable methyltransferase/methylase, at 658,321 to 659,340
Rv0567
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 655.592 kb on + strand, within Rv0564c at 655.593 kb on - strand, within Rv0564c at 655.796 kb on + strand, within Rv0564c at 655.961 kb on + strand at 656.056 kb on + strand at 656.089 kb on - strand at 656.146 kb on + strand at 656.147 kb on - strand at 656.353 kb on + strand, within Rv0565c at 656.353 kb on + strand, within Rv0565c at 656.447 kb on + strand, within Rv0565c at 656.487 kb on - strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.602 kb on + strand, within Rv0565c at 656.603 kb on - strand, within Rv0565c at 656.939 kb on - strand, within Rv0565c at 656.974 kb on - strand, within Rv0565c at 657.016 kb on + strand, within Rv0565c at 657.017 kb on - strand, within Rv0565c at 657.017 kb on - strand, within Rv0565c at 657.028 kb on + strand, within Rv0565c at 657.034 kb on + strand, within Rv0565c at 657.034 kb on + strand, within Rv0565c at 657.035 kb on - strand, within Rv0565c at 657.035 kb on - strand, within Rv0565c at 657.114 kb on - strand, within Rv0565c at 657.148 kb on + strand, within Rv0565c at 657.362 kb on - strand at 657.362 kb on - strand at 657.362 kb on - strand at 657.555 kb on + strand at 657.556 kb on - strand at 657.733 kb on + strand, within Rv0566c at 657.765 kb on + strand, within Rv0566c at 657.766 kb on - strand, within Rv0566c at 658.205 kb on + strand at 658.375 kb on - strand at 658.375 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.380 kb on - strand at 658.469 kb on + strand, within Rv0567 at 658.470 kb on - strand, within Rv0567
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Phenazine ethosulfate 0.0137 mM remove 655,592 + Rv0564c 0.65 +0.2 655,593 - Rv0564c 0.65 -0.2 655,796 + Rv0564c 0.85 +0.2 655,961 + -0.1 656,056 + -0.1 656,089 - +0.1 656,146 + -0.0 656,147 - +0.9 656,353 + Rv0565c 0.23 -1.2 656,353 + Rv0565c 0.23 -1.5 656,447 + Rv0565c 0.30 -1.6 656,487 - Rv0565c 0.33 +0.6 656,602 + Rv0565c 0.41 -1.0 656,602 + Rv0565c 0.41 +0.2 656,602 + Rv0565c 0.41 -0.8 656,603 - Rv0565c 0.41 -0.6 656,939 - Rv0565c 0.64 -1.8 656,974 - Rv0565c 0.66 +1.2 657,016 + Rv0565c 0.69 +0.2 657,017 - Rv0565c 0.69 -0.5 657,017 - Rv0565c 0.69 +0.2 657,028 + Rv0565c 0.70 -0.5 657,034 + Rv0565c 0.70 -0.8 657,034 + Rv0565c 0.70 -0.2 657,035 - Rv0565c 0.70 -0.3 657,035 - Rv0565c 0.70 -1.1 657,114 - Rv0565c 0.76 +0.1 657,148 + Rv0565c 0.78 -0.6 657,362 - +0.7 657,362 - +0.1 657,362 - +0.1 657,555 + +0.1 657,556 - -0.4 657,733 + Rv0566c 0.38 -0.1 657,765 + Rv0566c 0.44 +0.4 657,766 - Rv0566c 0.44 -0.1 658,205 + -0.8 658,375 - -0.5 658,375 - -0.1 658,380 - +3.6 658,380 - -0.5 658,380 - -0.8 658,380 - +1.2 658,469 + Rv0567 0.15 +2.1 658,470 - Rv0567 0.15 +0.3
Or see this region's nucleotide sequence