Experiment: 7H9 with Novobiocin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0492c and Rv0492A overlap by 4 nucleotides Rv0492A and Rv0493c overlap by 4 nucleotides Rv0493c and Rv0494 are separated by 4 nucleotides Rv0494 and Rv0495c are separated by 0 nucleotides
Rv0492c: Rv0492c - Probable oxidoreductase GMC-type, at 581,489 to 583,378
Rv0492c
Rv0492A: Rv0492A - Hypothetical protein, at 583,375 to 583,704
Rv0492A
Rv0493c: Rv0493c - Conserved protein, at 583,701 to 584,690
Rv0493c
Rv0494: Rv0494 - Probable transcriptional regulatory protein (probably GntR-family), at 584,695 to 585,423
Rv0494
Rv0495c: Rv0495c - Conserved hypothetical protein, at 585,424 to 586,314
Rv0495c
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1 at 582.783 kb on + strand, within Rv0492c at 582.783 kb on + strand, within Rv0492c at 582.784 kb on - strand, within Rv0492c at 582.795 kb on + strand, within Rv0492c at 583.042 kb on - strand, within Rv0492c at 583.189 kb on - strand, within Rv0492c at 583.189 kb on - strand, within Rv0492c at 583.260 kb on + strand at 583.261 kb on - strand at 583.348 kb on - strand at 583.408 kb on + strand, within Rv0492A at 583.408 kb on + strand, within Rv0492A at 583.422 kb on - strand, within Rv0492A at 583.571 kb on + strand, within Rv0492A at 583.572 kb on - strand, within Rv0492A at 583.864 kb on + strand, within Rv0493c at 583.865 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 584.055 kb on + strand, within Rv0493c at 584.073 kb on + strand, within Rv0493c at 584.091 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.355 kb on - strand, within Rv0493c at 584.385 kb on + strand, within Rv0493c at 584.385 kb on + strand, within Rv0493c at 584.500 kb on + strand, within Rv0493c at 584.544 kb on + strand, within Rv0493c at 584.545 kb on - strand, within Rv0493c at 584.582 kb on - strand, within Rv0493c at 584.582 kb on - strand, within Rv0493c at 584.582 kb on - strand, within Rv0493c at 585.041 kb on + strand, within Rv0494 at 585.042 kb on - strand, within Rv0494 at 585.169 kb on + strand, within Rv0494 at 585.170 kb on - strand, within Rv0494 at 585.274 kb on + strand, within Rv0494 at 585.275 kb on - strand, within Rv0494 at 585.370 kb on + strand at 585.422 kb on - strand at 585.422 kb on - strand at 585.422 kb on - strand at 585.426 kb on - strand at 585.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Novobiocin 0.004 mM remove 582,783 + Rv0492c 0.68 -0.6 582,783 + Rv0492c 0.68 -1.0 582,784 - Rv0492c 0.69 +0.1 582,795 + Rv0492c 0.69 -1.0 583,042 - Rv0492c 0.82 +1.1 583,189 - Rv0492c 0.90 +0.7 583,189 - Rv0492c 0.90 -0.0 583,260 + -0.2 583,261 - -0.4 583,348 - -0.4 583,408 + Rv0492A 0.10 -1.2 583,408 + Rv0492A 0.10 -0.1 583,422 - Rv0492A 0.14 +0.3 583,571 + Rv0492A 0.59 +0.6 583,572 - Rv0492A 0.60 +0.4 583,864 + Rv0493c 0.16 -0.9 583,865 - Rv0493c 0.17 -0.0 583,876 - Rv0493c 0.18 -0.4 583,876 - Rv0493c 0.18 +1.6 583,876 - Rv0493c 0.18 -0.0 584,055 + Rv0493c 0.36 -0.4 584,073 + Rv0493c 0.38 -0.3 584,091 + Rv0493c 0.39 -0.6 584,155 + Rv0493c 0.46 -0.3 584,155 + Rv0493c 0.46 -0.1 584,155 + Rv0493c 0.46 +0.6 584,155 + Rv0493c 0.46 -1.0 584,155 + Rv0493c 0.46 -1.3 584,156 - Rv0493c 0.46 -0.0 584,156 - Rv0493c 0.46 +0.6 584,156 - Rv0493c 0.46 +0.8 584,355 - Rv0493c 0.66 -0.3 584,385 + Rv0493c 0.69 -1.6 584,385 + Rv0493c 0.69 -1.3 584,500 + Rv0493c 0.81 -1.6 584,544 + Rv0493c 0.85 -0.2 584,545 - Rv0493c 0.85 -1.7 584,582 - Rv0493c 0.89 -0.2 584,582 - Rv0493c 0.89 -1.6 584,582 - Rv0493c 0.89 -0.5 585,041 + Rv0494 0.47 -0.6 585,042 - Rv0494 0.48 -0.8 585,169 + Rv0494 0.65 -0.5 585,170 - Rv0494 0.65 +0.6 585,274 + Rv0494 0.79 -0.5 585,275 - Rv0494 0.80 +1.2 585,370 + -0.8 585,422 - -0.1 585,422 - -0.5 585,422 - -1.1 585,426 - -1.8 585,426 - -0.1
Or see this region's nucleotide sequence