Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0490 and Rv0491 are separated by 227 nucleotides Rv0491 and Rv0492c overlap by 4 nucleotides Rv0492c and Rv0492A overlap by 4 nucleotides Rv0492A and Rv0493c overlap by 4 nucleotides
Rv0490: Rv0490 - Putative two component sensor histidine kinase SenX3, at 579,349 to 580,581
Rv0490
Rv0491: Rv0491 - Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family), at 580,809 to 581,492
Rv0491
Rv0492c: Rv0492c - Probable oxidoreductase GMC-type, at 581,489 to 583,378
Rv0492c
Rv0492A: Rv0492A - Hypothetical protein, at 583,375 to 583,704
Rv0492A
Rv0493c: Rv0493c - Conserved protein, at 583,701 to 584,690
Rv0493c
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 580.496 kb on - strand at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 581.100 kb on + strand, within Rv0491 at 581.368 kb on - strand, within Rv0491 at 581.475 kb on + strand at 581.528 kb on + strand at 581.852 kb on + strand, within Rv0492c at 581.852 kb on + strand, within Rv0492c at 581.876 kb on + strand, within Rv0492c at 581.876 kb on + strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.883 kb on + strand, within Rv0492c at 581.884 kb on - strand, within Rv0492c at 582.152 kb on - strand, within Rv0492c at 582.312 kb on + strand, within Rv0492c at 582.312 kb on + strand, within Rv0492c at 582.783 kb on + strand, within Rv0492c at 582.783 kb on + strand, within Rv0492c at 582.784 kb on - strand, within Rv0492c at 582.795 kb on + strand, within Rv0492c at 583.042 kb on - strand, within Rv0492c at 583.189 kb on - strand, within Rv0492c at 583.189 kb on - strand, within Rv0492c at 583.260 kb on + strand at 583.261 kb on - strand at 583.348 kb on - strand at 583.408 kb on + strand, within Rv0492A at 583.408 kb on + strand, within Rv0492A at 583.422 kb on - strand, within Rv0492A at 583.571 kb on + strand, within Rv0492A at 583.572 kb on - strand, within Rv0492A at 583.864 kb on + strand, within Rv0493c at 583.865 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 583.876 kb on - strand, within Rv0493c at 584.055 kb on + strand, within Rv0493c at 584.073 kb on + strand, within Rv0493c at 584.091 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.155 kb on + strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.156 kb on - strand, within Rv0493c at 584.355 kb on - strand, within Rv0493c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 580,496 - -0.2 580,996 + Rv0491 0.27 -0.5 580,996 + Rv0491 0.27 +0.8 580,996 + Rv0491 0.27 -0.4 580,996 + Rv0491 0.27 +0.4 580,996 + Rv0491 0.27 +1.8 580,997 - Rv0491 0.27 -1.6 580,997 - Rv0491 0.27 -0.8 580,997 - Rv0491 0.27 -0.1 580,997 - Rv0491 0.27 -0.1 580,997 - Rv0491 0.27 -0.4 581,100 + Rv0491 0.43 +1.2 581,368 - Rv0491 0.82 -0.2 581,475 + -2.0 581,528 + +4.4 581,852 + Rv0492c 0.19 +0.9 581,852 + Rv0492c 0.19 -0.3 581,876 + Rv0492c 0.20 +0.5 581,876 + Rv0492c 0.20 -0.2 581,877 - Rv0492c 0.21 -0.9 581,877 - Rv0492c 0.21 -0.8 581,877 - Rv0492c 0.21 +1.8 581,883 + Rv0492c 0.21 -0.1 581,884 - Rv0492c 0.21 -0.4 582,152 - Rv0492c 0.35 -0.4 582,312 + Rv0492c 0.44 +1.8 582,312 + Rv0492c 0.44 +1.0 582,783 + Rv0492c 0.68 +0.3 582,783 + Rv0492c 0.68 -0.7 582,784 - Rv0492c 0.69 -0.5 582,795 + Rv0492c 0.69 +1.6 583,042 - Rv0492c 0.82 +0.8 583,189 - Rv0492c 0.90 +1.4 583,189 - Rv0492c 0.90 -2.8 583,260 + -0.1 583,261 - +1.4 583,348 - -0.3 583,408 + Rv0492A 0.10 +1.7 583,408 + Rv0492A 0.10 -0.3 583,422 - Rv0492A 0.14 +0.5 583,571 + Rv0492A 0.59 -0.9 583,572 - Rv0492A 0.60 -0.1 583,864 + Rv0493c 0.16 +0.0 583,865 - Rv0493c 0.17 +0.7 583,876 - Rv0493c 0.18 -0.1 583,876 - Rv0493c 0.18 +1.8 583,876 - Rv0493c 0.18 +1.0 584,055 + Rv0493c 0.36 -1.1 584,073 + Rv0493c 0.38 +0.0 584,091 + Rv0493c 0.39 +0.2 584,155 + Rv0493c 0.46 -0.4 584,155 + Rv0493c 0.46 +0.9 584,155 + Rv0493c 0.46 +0.2 584,155 + Rv0493c 0.46 -1.8 584,155 + Rv0493c 0.46 -1.0 584,156 - Rv0493c 0.46 +1.8 584,156 - Rv0493c 0.46 +0.8 584,156 - Rv0493c 0.46 -1.0 584,355 - Rv0493c 0.66 -0.1
Or see this region's nucleotide sequence