Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0153c and Rv0154c are separated by 1 nucleotides Rv0154c and Rv0155 are separated by 423 nucleotides
Rv0153c: Rv0153c - Phosphotyrosine protein phosphatase PTPB (protein-tyrosine-phosphatase) (PTPase), at 181,155 to 181,985
Rv0153c
Rv0154c: Rv0154c - Probable acyl-CoA dehydrogenase FadE2, at 181,987 to 183,198
Rv0154c
Rv0155: Rv0155 - Probable NAD(P) transhydrogenase (subunit alpha) PntAa [first part; catalytic part] (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha), at 183,622 to 184,722
Rv0155
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 180.998 kb on - strand at 181.237 kb on + strand at 181.274 kb on - strand, within Rv0153c at 181.597 kb on + strand, within Rv0153c at 182.103 kb on - strand at 182.718 kb on + strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 182.736 kb on - strand, within Rv0154c at 183.019 kb on + strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.020 kb on - strand, within Rv0154c at 183.110 kb on + strand at 183.221 kb on + strand at 183.221 kb on + strand at 183.222 kb on - strand at 183.225 kb on + strand at 183.225 kb on + strand at 183.245 kb on + strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.246 kb on - strand at 183.345 kb on + strand at 183.345 kb on + strand at 183.346 kb on - strand at 183.406 kb on - strand at 183.508 kb on + strand at 183.509 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.599 kb on + strand at 183.600 kb on - strand at 183.615 kb on - strand at 183.925 kb on - strand, within Rv0155 at 184.051 kb on + strand, within Rv0155 at 184.051 kb on + strand, within Rv0155 at 184.054 kb on - strand, within Rv0155 at 184.054 kb on - strand, within Rv0155
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 180,998 - -2.0 181,237 + -0.4 181,274 - Rv0153c 0.14 -0.7 181,597 + Rv0153c 0.53 -2.2 182,103 - -1.7 182,718 + Rv0154c 0.60 -2.1 182,736 - Rv0154c 0.62 -0.1 182,736 - Rv0154c 0.62 -1.3 182,736 - Rv0154c 0.62 -0.3 183,019 + Rv0154c 0.85 -1.1 183,020 - Rv0154c 0.85 +0.4 183,020 - Rv0154c 0.85 -0.8 183,020 - Rv0154c 0.85 +0.5 183,110 + -0.8 183,221 + -0.1 183,221 + -0.1 183,222 - -0.3 183,225 + -0.4 183,225 + +0.8 183,245 + +0.3 183,246 - -1.5 183,246 - +0.4 183,246 - -0.3 183,246 - +0.9 183,246 - +0.6 183,345 + -0.9 183,345 + +0.1 183,346 - -0.0 183,406 - -0.8 183,508 + -1.0 183,509 - +0.1 183,549 - -1.3 183,549 - -0.5 183,599 + -0.4 183,600 - -0.1 183,615 - -3.0 183,925 - Rv0155 0.28 +0.5 184,051 + Rv0155 0.39 +0.6 184,051 + Rv0155 0.39 -0.4 184,054 - Rv0155 0.39 +0.3 184,054 - Rv0155 0.39 -0.3
Or see this region's nucleotide sequence