Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0584 and Rv0585c are separated by 22 nucleotides Rv0585c and Rv0586 are separated by 137 nucleotides Rv0586 and Rv0587 overlap by 4 nucleotides
Rv0584: Rv0584 - Possible conserved exported protein, at 679,229 to 681,862
Rv0584
Rv0585c: Rv0585c - Probable conserved integral membrane protein, at 681,885 to 684,272
Rv0585c
Rv0586: Rv0586 - Probable transcriptional regulatory protein Mce2R (GntR-family), at 684,410 to 685,132
Rv0586
Rv0587: Rv0587 - Conserved hypothetical integral membrane protein YrbE2A, at 685,129 to 685,926
Rv0587
Position (kb) 681
682
683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 680.888 kb on + strand, within Rv0584 at 680.939 kb on + strand, within Rv0584 at 680.939 kb on + strand, within Rv0584 at 681.060 kb on - strand, within Rv0584 at 681.060 kb on - strand, within Rv0584 at 681.104 kb on + strand, within Rv0584 at 681.111 kb on - strand, within Rv0584 at 681.111 kb on - strand, within Rv0584 at 681.225 kb on - strand, within Rv0584 at 681.381 kb on - strand, within Rv0584 at 681.558 kb on + strand, within Rv0584 at 681.558 kb on + strand, within Rv0584 at 681.754 kb on - strand at 681.780 kb on - strand at 681.788 kb on + strand at 681.788 kb on + strand at 681.789 kb on - strand at 681.812 kb on - strand at 681.886 kb on + strand at 682.251 kb on + strand, within Rv0585c at 682.252 kb on - strand, within Rv0585c at 682.386 kb on + strand, within Rv0585c at 682.739 kb on + strand, within Rv0585c at 682.762 kb on + strand, within Rv0585c at 682.780 kb on - strand, within Rv0585c at 683.145 kb on - strand, within Rv0585c at 683.266 kb on + strand, within Rv0585c at 683.266 kb on + strand, within Rv0585c at 683.267 kb on - strand, within Rv0585c at 683.326 kb on - strand, within Rv0585c at 683.326 kb on - strand, within Rv0585c at 683.952 kb on - strand, within Rv0585c at 684.058 kb on + strand at 684.059 kb on - strand at 684.278 kb on - strand at 684.278 kb on - strand at 684.339 kb on + strand at 684.700 kb on + strand, within Rv0586 at 685.157 kb on - strand at 685.217 kb on + strand, within Rv0587 at 685.218 kb on - strand, within Rv0587
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 680,888 + Rv0584 0.63 +1.7 680,939 + Rv0584 0.65 -0.2 680,939 + Rv0584 0.65 -0.1 681,060 - Rv0584 0.70 -0.5 681,060 - Rv0584 0.70 -0.4 681,104 + Rv0584 0.71 +1.0 681,111 - Rv0584 0.71 -0.8 681,111 - Rv0584 0.71 -2.7 681,225 - Rv0584 0.76 +0.0 681,381 - Rv0584 0.82 -1.7 681,558 + Rv0584 0.88 -0.2 681,558 + Rv0584 0.88 -1.6 681,754 - -0.8 681,780 - +0.1 681,788 + +1.3 681,788 + +0.1 681,789 - -2.0 681,812 - -0.3 681,886 + -0.1 682,251 + Rv0585c 0.15 -0.8 682,252 - Rv0585c 0.15 -1.0 682,386 + Rv0585c 0.21 -1.4 682,739 + Rv0585c 0.36 +0.1 682,762 + Rv0585c 0.37 -1.3 682,780 - Rv0585c 0.37 -0.2 683,145 - Rv0585c 0.53 -0.7 683,266 + Rv0585c 0.58 +0.1 683,266 + Rv0585c 0.58 +0.6 683,267 - Rv0585c 0.58 -0.1 683,326 - Rv0585c 0.60 -0.3 683,326 - Rv0585c 0.60 -1.8 683,952 - Rv0585c 0.87 -1.8 684,058 + +0.3 684,059 - -0.2 684,278 - -0.6 684,278 - -0.5 684,339 + -0.2 684,700 + Rv0586 0.40 -0.4 685,157 - -0.1 685,217 + Rv0587 0.11 +0.1 685,218 - Rv0587 0.11 -0.4
Or see this region's nucleotide sequence