Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0317c and GFF329 are separated by 260 nucleotides GFF329 and Rv0318c are separated by 30 nucleotides Rv0318c and Rv0319 are separated by 48 nucleotides Rv0319 and Rv0320 are separated by 71 nucleotides
Rv0317c: Rv0317c - Possible glycerophosphoryl diester phosphodiesterase GlpQ2 (glycerophosphodiester phosphodiesterase), at 385,173 to 385,943
Rv0317c
GFF329 - tRNA-Gly, at 386,204 to 386,274
GFF329
Rv0318c: Rv0318c - Probable conserved integral membrane protein, at 386,305 to 387,099
Rv0318c
Rv0319: Rv0319 - Probable pyrrolidone-carboxylate peptidase Pcp (5-oxoprolyl-peptidase) (pyroglutamyl-peptidase I) (PGP-I) (pyrase), at 387,148 to 387,816
Rv0319
Rv0320: Rv0320 - Possible conserved exported protein, at 387,888 to 388,550
Rv0320
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 385.359 kb on + strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.421 kb on - strand, within Rv0317c at 385.484 kb on + strand, within Rv0317c at 385.617 kb on - strand, within Rv0317c at 385.766 kb on + strand, within Rv0317c at 385.767 kb on - strand, within Rv0317c at 385.788 kb on + strand, within Rv0317c at 385.825 kb on + strand, within Rv0317c at 385.826 kb on - strand, within Rv0317c at 385.983 kb on + strand at 385.983 kb on + strand at 386.075 kb on - strand at 386.294 kb on - strand at 386.327 kb on + strand at 386.328 kb on - strand at 386.466 kb on + strand, within Rv0318c at 386.522 kb on - strand, within Rv0318c at 386.560 kb on - strand, within Rv0318c at 386.714 kb on - strand, within Rv0318c at 386.800 kb on + strand, within Rv0318c at 386.867 kb on - strand, within Rv0318c at 387.134 kb on - strand at 387.490 kb on + strand, within Rv0319 at 387.598 kb on + strand, within Rv0319 at 387.599 kb on - strand, within Rv0319 at 387.599 kb on - strand, within Rv0319 at 387.599 kb on - strand, within Rv0319 at 387.781 kb on - strand at 387.847 kb on - strand at 387.904 kb on + strand at 387.992 kb on + strand, within Rv0320 at 387.992 kb on + strand, within Rv0320 at 388.093 kb on + strand, within Rv0320 at 388.094 kb on - strand, within Rv0320
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 385,359 + Rv0317c 0.24 -0.4 385,421 - Rv0317c 0.32 +0.0 385,421 - Rv0317c 0.32 +0.2 385,421 - Rv0317c 0.32 -0.6 385,484 + Rv0317c 0.40 -0.7 385,617 - Rv0317c 0.58 +0.1 385,766 + Rv0317c 0.77 -0.1 385,767 - Rv0317c 0.77 -0.8 385,788 + Rv0317c 0.80 +1.3 385,825 + Rv0317c 0.85 +0.4 385,826 - Rv0317c 0.85 +0.5 385,983 + -0.3 385,983 + -0.8 386,075 - -0.9 386,294 - -0.6 386,327 + -0.6 386,328 - +0.1 386,466 + Rv0318c 0.20 -1.2 386,522 - Rv0318c 0.27 -0.3 386,560 - Rv0318c 0.32 -0.4 386,714 - Rv0318c 0.51 -1.4 386,800 + Rv0318c 0.62 -0.4 386,867 - Rv0318c 0.71 -0.8 387,134 - +0.1 387,490 + Rv0319 0.51 -0.4 387,598 + Rv0319 0.67 -1.0 387,599 - Rv0319 0.67 +1.2 387,599 - Rv0319 0.67 +0.0 387,599 - Rv0319 0.67 -0.0 387,781 - -0.0 387,847 - -0.8 387,904 + -2.9 387,992 + Rv0320 0.16 -0.7 387,992 + Rv0320 0.16 +0.1 388,093 + Rv0320 0.31 -0.0 388,094 - Rv0320 0.31 +0.2
Or see this region's nucleotide sequence