Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0139 and Rv0140 are separated by 60 nucleotides Rv0140 and Rv0141c overlap by 20 nucleotides Rv0141c and Rv0142 are separated by 29 nucleotides Rv0142 and Rv0143c are separated by 66 nucleotides
Rv0139: Rv0139 - Possible oxidoreductase, at 165,827 to 166,849
Rv0139
Rv0140: Rv0140 - Conserved protein, at 166,910 to 167,290
Rv0140
Rv0141c: Rv0141c - Unknown protein, at 167,271 to 167,681
Rv0141c
Rv0142: Rv0142 - Conserved hypothetical protein, at 167,711 to 168,637
Rv0142
Rv0143c: Rv0143c - Probable conserved transmembrane protein, at 168,704 to 170,182
Rv0143c
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.863 kb on - strand at 166.986 kb on + strand, within Rv0140 at 167.065 kb on + strand, within Rv0140 at 167.085 kb on + strand, within Rv0140 at 167.120 kb on + strand, within Rv0140 at 167.121 kb on - strand, within Rv0140 at 167.148 kb on - strand, within Rv0140 at 167.148 kb on - strand, within Rv0140 at 167.150 kb on + strand, within Rv0140 at 167.201 kb on + strand, within Rv0140 at 167.202 kb on - strand, within Rv0140 at 167.308 kb on - strand at 167.308 kb on - strand at 167.335 kb on + strand, within Rv0141c at 167.398 kb on + strand, within Rv0141c at 167.570 kb on - strand, within Rv0141c at 167.839 kb on + strand, within Rv0142 at 167.839 kb on + strand, within Rv0142 at 167.840 kb on - strand, within Rv0142 at 167.840 kb on - strand, within Rv0142 at 167.840 kb on - strand, within Rv0142 at 168.158 kb on + strand, within Rv0142 at 168.158 kb on + strand, within Rv0142 at 168.158 kb on + strand, within Rv0142 at 168.384 kb on + strand, within Rv0142 at 168.384 kb on + strand, within Rv0142 at 168.449 kb on + strand, within Rv0142 at 168.635 kb on + strand at 168.636 kb on - strand at 168.777 kb on + strand at 168.777 kb on + strand at 168.777 kb on + strand at 169.043 kb on + strand, within Rv0143c at 169.044 kb on - strand, within Rv0143c at 169.208 kb on + strand, within Rv0143c at 169.208 kb on + strand, within Rv0143c at 169.209 kb on - strand, within Rv0143c at 169.209 kb on - strand, within Rv0143c at 169.273 kb on + strand, within Rv0143c at 169.305 kb on + strand, within Rv0143c at 169.305 kb on + strand, within Rv0143c at 169.305 kb on + strand, within Rv0143c at 169.305 kb on + strand, within Rv0143c at 169.306 kb on - strand, within Rv0143c at 169.306 kb on - strand, within Rv0143c at 169.311 kb on + strand, within Rv0143c at 169.311 kb on + strand, within Rv0143c at 169.311 kb on + strand, within Rv0143c at 169.312 kb on - strand, within Rv0143c at 169.355 kb on + strand, within Rv0143c at 169.355 kb on + strand, within Rv0143c at 169.380 kb on + strand, within Rv0143c at 169.380 kb on + strand, within Rv0143c at 169.395 kb on + strand, within Rv0143c at 169.483 kb on - strand, within Rv0143c at 169.568 kb on + strand, within Rv0143c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 166,863 - -0.3 166,986 + Rv0140 0.20 +0.4 167,065 + Rv0140 0.41 -0.1 167,085 + Rv0140 0.46 -0.9 167,120 + Rv0140 0.55 +0.3 167,121 - Rv0140 0.55 +0.5 167,148 - Rv0140 0.62 -0.3 167,148 - Rv0140 0.62 -0.8 167,150 + Rv0140 0.63 +1.8 167,201 + Rv0140 0.76 -0.9 167,202 - Rv0140 0.77 +0.4 167,308 - +0.2 167,308 - -0.6 167,335 + Rv0141c 0.16 -0.2 167,398 + Rv0141c 0.31 -0.1 167,570 - Rv0141c 0.73 -2.0 167,839 + Rv0142 0.14 -0.6 167,839 + Rv0142 0.14 +0.2 167,840 - Rv0142 0.14 +0.1 167,840 - Rv0142 0.14 -0.2 167,840 - Rv0142 0.14 +1.8 168,158 + Rv0142 0.48 -0.1 168,158 + Rv0142 0.48 -0.1 168,158 + Rv0142 0.48 +1.2 168,384 + Rv0142 0.73 -0.1 168,384 + Rv0142 0.73 -0.1 168,449 + Rv0142 0.80 +0.6 168,635 + -0.6 168,636 - -1.1 168,777 + +0.4 168,777 + -0.7 168,777 + +0.9 169,043 + Rv0143c 0.23 +1.8 169,044 - Rv0143c 0.23 -0.3 169,208 + Rv0143c 0.34 +0.2 169,208 + Rv0143c 0.34 -0.4 169,209 - Rv0143c 0.34 -1.0 169,209 - Rv0143c 0.34 +0.3 169,273 + Rv0143c 0.38 -0.3 169,305 + Rv0143c 0.41 -0.0 169,305 + Rv0143c 0.41 -0.4 169,305 + Rv0143c 0.41 -0.4 169,305 + Rv0143c 0.41 -0.6 169,306 - Rv0143c 0.41 -1.7 169,306 - Rv0143c 0.41 +0.3 169,311 + Rv0143c 0.41 -0.1 169,311 + Rv0143c 0.41 -0.1 169,311 + Rv0143c 0.41 -1.1 169,312 - Rv0143c 0.41 -0.2 169,355 + Rv0143c 0.44 +0.3 169,355 + Rv0143c 0.44 -2.8 169,380 + Rv0143c 0.46 +1.0 169,380 + Rv0143c 0.46 -1.9 169,395 + Rv0143c 0.47 -0.4 169,483 - Rv0143c 0.53 +1.1 169,568 + Rv0143c 0.58 +0.3
Or see this region's nucleotide sequence