Experiment: 7H9 with Chloramphenicol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0106 and Rv0107c are separated by 72 nucleotides Rv0107c and Rv0108c are separated by 353 nucleotides Rv0108c and Rv0109 are separated by 277 nucleotides
Rv0106: Rv0106 - Conserved hypothetical protein, at 124,374 to 125,570
Rv0106
Rv0107c: Rv0107c - Probable cation-transporter ATPase I CtpI, at 125,643 to 130,541
Rv0107c
Rv0108c: Rv0108c - Hypothetical protein, at 130,895 to 131,104
Rv0108c
Rv0109: Rv0109 - PE-PGRS family protein PE_PGRS1, at 131,382 to 132,872
Rv0109
Position (kb) 125
126
127
128
129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 125.015 kb on + strand, within Rv0106 at 125.293 kb on - strand, within Rv0106 at 125.293 kb on - strand, within Rv0106 at 125.293 kb on - strand, within Rv0106 at 125.377 kb on + strand, within Rv0106 at 125.470 kb on - strand at 125.605 kb on + strand at 125.606 kb on - strand at 125.620 kb on + strand at 125.644 kb on + strand at 125.666 kb on + strand at 127.345 kb on - strand, within Rv0107c at 127.392 kb on + strand, within Rv0107c at 127.392 kb on + strand, within Rv0107c at 128.390 kb on - strand, within Rv0107c at 128.697 kb on + strand, within Rv0107c at 128.697 kb on + strand, within Rv0107c at 128.904 kb on + strand, within Rv0107c at 128.904 kb on + strand, within Rv0107c at 129.184 kb on + strand, within Rv0107c at 129.270 kb on - strand, within Rv0107c at 129.321 kb on + strand, within Rv0107c at 129.321 kb on + strand, within Rv0107c at 129.321 kb on + strand, within Rv0107c at 129.322 kb on - strand, within Rv0107c at 129.396 kb on + strand, within Rv0107c at 129.496 kb on + strand, within Rv0107c at 129.496 kb on + strand, within Rv0107c at 129.496 kb on + strand, within Rv0107c at 129.497 kb on - strand, within Rv0107c at 129.497 kb on - strand, within Rv0107c at 129.497 kb on - strand, within Rv0107c at 129.860 kb on + strand, within Rv0107c at 129.861 kb on - strand, within Rv0107c at 129.861 kb on - strand, within Rv0107c at 130.020 kb on - strand, within Rv0107c at 130.020 kb on - strand, within Rv0107c at 130.074 kb on + strand at 130.107 kb on + strand at 130.107 kb on + strand at 130.108 kb on - strand at 130.108 kb on - strand at 130.108 kb on - strand at 130.108 kb on - strand at 130.491 kb on + strand at 130.574 kb on - strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.617 kb on - strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.929 kb on + strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.150 kb on - strand at 131.150 kb on - strand at 131.329 kb on - strand at 131.329 kb on - strand at 131.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Chloramphenicol 0.01 mM remove 125,015 + Rv0106 0.54 -0.4 125,293 - Rv0106 0.77 -0.1 125,293 - Rv0106 0.77 +0.6 125,293 - Rv0106 0.77 +0.9 125,377 + Rv0106 0.84 +0.2 125,470 - -0.7 125,605 + -0.4 125,606 - -0.0 125,620 + +0.3 125,644 + -0.1 125,666 + -0.4 127,345 - Rv0107c 0.35 -0.7 127,392 + Rv0107c 0.36 -0.4 127,392 + Rv0107c 0.36 -0.2 128,390 - Rv0107c 0.56 -0.5 128,697 + Rv0107c 0.62 -0.0 128,697 + Rv0107c 0.62 +0.7 128,904 + Rv0107c 0.67 -1.0 128,904 + Rv0107c 0.67 +0.8 129,184 + Rv0107c 0.72 +0.8 129,270 - Rv0107c 0.74 -0.0 129,321 + Rv0107c 0.75 -0.7 129,321 + Rv0107c 0.75 -0.0 129,321 + Rv0107c 0.75 -1.0 129,322 - Rv0107c 0.75 -0.4 129,396 + Rv0107c 0.77 -1.1 129,496 + Rv0107c 0.79 -1.5 129,496 + Rv0107c 0.79 -0.6 129,496 + Rv0107c 0.79 -0.6 129,497 - Rv0107c 0.79 -1.9 129,497 - Rv0107c 0.79 -2.6 129,497 - Rv0107c 0.79 +0.4 129,860 + Rv0107c 0.86 -1.3 129,861 - Rv0107c 0.86 -0.4 129,861 - Rv0107c 0.86 -0.2 130,020 - Rv0107c 0.89 -0.3 130,020 - Rv0107c 0.89 +0.1 130,074 + -0.9 130,107 + +0.3 130,107 + -0.4 130,108 - -0.1 130,108 - +0.2 130,108 - -0.7 130,108 - -0.3 130,491 + -0.5 130,574 - -0.8 130,587 + +3.4 130,587 + +0.6 130,587 + +1.2 130,587 + +0.8 130,617 - +0.1 130,699 + +0.0 130,699 + -0.2 130,699 + -0.1 130,699 + -0.5 130,929 + Rv0108c 0.16 -0.4 131,038 - Rv0108c 0.68 -0.5 131,038 - Rv0108c 0.68 -0.6 131,038 - Rv0108c 0.68 -1.2 131,150 - +0.3 131,150 - -0.2 131,329 - -0.1 131,329 - +0.0 131,342 - -1.3
Or see this region's nucleotide sequence