Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0804

Experiment: 7H9 with Econazole nitrate salt 0.0082 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0803 and Rv0804 overlap by 4 nucleotidesRv0804 and Rv0805 are separated by 120 nucleotides Rv0803: Rv0803 - Phosphoribosylformylglycinamidine synthase II PurL (FGAM synthase II), at 895,820 to 898,084 Rv0803 Rv0804: Rv0804 - Conserved hypothetical protein, at 898,081 to 898,710 Rv0804 Rv0805: Rv0805 - Class III cyclic nucleotide phosphodiesterase (cNMP PDE), at 898,831 to 899,787 Rv0805 Position (kb) 898 899Strain fitness (log2 ratio) -1 0 1at 898.376 kb on + strand, within Rv0804at 898.376 kb on + strand, within Rv0804at 898.386 kb on + strand, within Rv0804at 898.386 kb on - strand, within Rv0804at 898.386 kb on - strand, within Rv0804at 898.386 kb on - strand, within Rv0804at 898.440 kb on + strand, within Rv0804at 898.479 kb on - strand, within Rv0804at 898.479 kb on - strand, within Rv0804at 898.780 kb on - strandat 898.799 kb on + strandat 898.837 kb on - strandat 898.837 kb on - strandat 898.843 kb on - strandat 898.870 kb on + strandat 898.880 kb on + strandat 898.880 kb on + strandat 898.880 kb on + strandat 898.880 kb on + strandat 898.881 kb on - strandat 898.884 kb on + strandat 898.884 kb on + strandat 898.884 kb on + strandat 898.885 kb on - strandat 899.028 kb on + strand, within Rv0805at 899.119 kb on - strand, within Rv0805

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Econazole nitrate salt 0.0082 mM
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898,376 + Rv0804 0.47 +1.6
898,376 + Rv0804 0.47 -0.1
898,386 + Rv0804 0.48 -0.1
898,386 - Rv0804 0.48 -0.9
898,386 - Rv0804 0.48 +0.0
898,386 - Rv0804 0.48 -0.5
898,440 + Rv0804 0.57 -1.5
898,479 - Rv0804 0.63 -1.5
898,479 - Rv0804 0.63 -1.0
898,780 - -0.8
898,799 + -1.4
898,837 - +0.2
898,837 - -0.7
898,843 - -0.4
898,870 + -0.4
898,880 + +1.3
898,880 + -0.5
898,880 + +0.1
898,880 + +0.7
898,881 - -0.2
898,884 + -0.7
898,884 + +0.5
898,884 + -0.4
898,885 - +0.0
899,028 + Rv0805 0.21 -0.4
899,119 - Rv0805 0.30 +0.7

Or see this region's nucleotide sequence