Experiment: 7H9 with Econazole nitrate salt 0.0082 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0888 and Rv0889c are separated by 34 nucleotides
Rv0888: Rv0888 - Probable exported protein, at 987,233 to 988,705
Rv0888
Rv0889c: Rv0889c - Probable citrate synthase II CitA, at 988,740 to 989,861
Rv0889c
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1
2 at 986.901 kb on + strand at 987.173 kb on + strand at 987.173 kb on + strand at 987.174 kb on - strand at 987.174 kb on - strand at 987.240 kb on - strand at 987.304 kb on + strand at 987.453 kb on + strand, within Rv0888 at 987.453 kb on + strand, within Rv0888 at 987.454 kb on - strand, within Rv0888 at 987.920 kb on + strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.044 kb on - strand, within Rv0888 at 988.102 kb on + strand, within Rv0888 at 988.117 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.239 kb on - strand, within Rv0888 at 988.280 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.477 kb on - strand, within Rv0888 at 988.676 kb on + strand at 988.699 kb on - strand at 988.807 kb on + strand at 988.807 kb on + strand at 988.808 kb on - strand at 988.808 kb on - strand at 989.104 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.498 kb on - strand, within Rv0889c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Econazole nitrate salt 0.0082 mM remove 986,901 + -1.4 987,173 + -0.6 987,173 + +0.4 987,174 - +0.7 987,174 - -0.5 987,240 - -1.1 987,304 + -0.2 987,453 + Rv0888 0.15 -0.9 987,453 + Rv0888 0.15 -0.9 987,454 - Rv0888 0.15 +0.1 987,920 + Rv0888 0.47 -0.1 987,921 - Rv0888 0.47 -0.5 987,921 - Rv0888 0.47 -1.6 988,011 - Rv0888 0.53 +0.1 988,011 - Rv0888 0.53 -0.1 988,014 - Rv0888 0.53 +0.3 988,014 - Rv0888 0.53 +0.0 988,014 - Rv0888 0.53 -0.7 988,044 - Rv0888 0.55 +0.7 988,102 + Rv0888 0.59 -0.5 988,117 + Rv0888 0.60 -0.2 988,193 + Rv0888 0.65 +0.1 988,193 + Rv0888 0.65 -0.3 988,193 + Rv0888 0.65 -2.1 988,193 + Rv0888 0.65 +1.8 988,194 - Rv0888 0.65 +0.7 988,194 - Rv0888 0.65 -0.1 988,194 - Rv0888 0.65 +0.2 988,194 - Rv0888 0.65 +0.8 988,194 - Rv0888 0.65 +1.3 988,239 - Rv0888 0.68 -0.3 988,280 + Rv0888 0.71 -0.3 988,287 + Rv0888 0.72 +0.7 988,287 + Rv0888 0.72 +1.3 988,288 - Rv0888 0.72 -0.5 988,288 - Rv0888 0.72 +0.8 988,291 + Rv0888 0.72 -1.1 988,291 + Rv0888 0.72 -0.0 988,292 - Rv0888 0.72 +0.0 988,292 - Rv0888 0.72 -0.2 988,292 - Rv0888 0.72 +0.2 988,292 - Rv0888 0.72 +1.3 988,346 + Rv0888 0.76 -0.8 988,346 + Rv0888 0.76 +0.8 988,347 - Rv0888 0.76 +0.3 988,347 - Rv0888 0.76 -0.6 988,347 - Rv0888 0.76 +2.5 988,477 - Rv0888 0.84 +0.7 988,676 + -0.2 988,699 - -0.4 988,807 + -1.4 988,807 + -0.2 988,808 - +0.1 988,808 - +1.3 989,104 + Rv0889c 0.32 -0.6 989,470 + Rv0889c 0.65 +0.2 989,470 + Rv0889c 0.65 +0.1 989,498 - Rv0889c 0.68 -0.0
Or see this region's nucleotide sequence