Experiment: 7H9 with Econazole nitrate salt 0.0082 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0652 and Rv0653c overlap by 8 nucleotides Rv0653c and Rv0654 are separated by 70 nucleotides Rv0654 and Rv0655 are separated by 11 nucleotides
Rv0652: Rv0652 - 50S ribosomal protein L7/L12 RplL (SA1), at 748,849 to 749,241
Rv0652
Rv0653c: Rv0653c - Possible transcriptional regulatory protein (probably TetR-family), at 749,234 to 749,929
Rv0653c
Rv0654: Rv0654 - Probable dioxygenase, at 750,000 to 751,505
Rv0654
Rv0655: Rv0655 - Possible ribonucleotide-transport ATP-binding protein ABC transporter Mkl, at 751,517 to 752,596
Rv0655
Position (kb) 749
750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 749.239 kb on + strand at 749.240 kb on - strand at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.635 kb on - strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.800 kb on - strand, within Rv0653c at 750.073 kb on + strand at 750.073 kb on + strand at 750.073 kb on + strand at 750.074 kb on - strand at 750.074 kb on - strand at 750.130 kb on - strand at 750.130 kb on - strand at 750.138 kb on - strand at 750.177 kb on + strand, within Rv0654 at 750.177 kb on + strand, within Rv0654 at 750.178 kb on - strand, within Rv0654 at 750.408 kb on + strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.475 kb on - strand, within Rv0654 at 750.528 kb on + strand, within Rv0654 at 750.529 kb on - strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.667 kb on - strand, within Rv0654 at 750.838 kb on - strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.954 kb on + strand, within Rv0654 at 750.955 kb on - strand, within Rv0654 at 751.182 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.246 kb on - strand, within Rv0654 at 751.247 kb on + strand, within Rv0654 at 751.248 kb on - strand, within Rv0654 at 751.615 kb on - strand at 751.814 kb on + strand, within Rv0655 at 751.814 kb on + strand, within Rv0655 at 751.881 kb on - strand, within Rv0655 at 752.023 kb on + strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.269 kb on - strand, within Rv0655
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Econazole nitrate salt 0.0082 mM remove 749,239 + +2.7 749,240 - -1.1 749,447 + Rv0653c 0.31 -0.6 749,447 + Rv0653c 0.31 -2.1 749,447 + Rv0653c 0.31 -0.2 749,448 - Rv0653c 0.31 -0.4 749,448 - Rv0653c 0.31 +1.7 749,634 + Rv0653c 0.57 +0.8 749,634 + Rv0653c 0.57 -0.7 749,635 - Rv0653c 0.58 -0.4 749,744 + Rv0653c 0.73 -1.6 749,744 + Rv0653c 0.73 +0.1 749,800 - Rv0653c 0.81 -0.0 750,073 + -0.3 750,073 + -0.0 750,073 + -1.2 750,074 - +0.6 750,074 - -0.0 750,130 - +0.2 750,130 - -0.6 750,138 - -0.8 750,177 + Rv0654 0.12 -0.3 750,177 + Rv0654 0.12 +1.7 750,178 - Rv0654 0.12 +0.3 750,408 + Rv0654 0.27 +0.2 750,409 - Rv0654 0.27 -0.4 750,409 - Rv0654 0.27 -0.1 750,475 - Rv0654 0.32 +0.4 750,528 + Rv0654 0.35 -0.0 750,529 - Rv0654 0.35 -0.1 750,654 + Rv0654 0.43 +0.2 750,654 + Rv0654 0.43 -0.9 750,654 + Rv0654 0.43 +0.0 750,654 + Rv0654 0.43 -0.4 750,654 + Rv0654 0.43 -0.6 750,655 - Rv0654 0.43 -0.2 750,655 - Rv0654 0.43 +0.6 750,667 - Rv0654 0.44 +1.1 750,838 - Rv0654 0.56 -0.4 750,930 + Rv0654 0.62 +0.6 750,930 + Rv0654 0.62 -0.1 750,930 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 +0.2 750,934 + Rv0654 0.62 -0.8 750,934 + Rv0654 0.62 -0.5 750,934 + Rv0654 0.62 -1.1 750,934 + Rv0654 0.62 -0.3 750,934 + Rv0654 0.62 -0.2 750,934 + Rv0654 0.62 -0.4 750,935 - Rv0654 0.62 -0.5 750,935 - Rv0654 0.62 +0.8 750,935 - Rv0654 0.62 +0.7 750,935 - Rv0654 0.62 -2.6 750,936 + Rv0654 0.62 -0.7 750,936 + Rv0654 0.62 +0.5 750,937 - Rv0654 0.62 +0.6 750,937 - Rv0654 0.62 +0.1 750,937 - Rv0654 0.62 -1.1 750,947 + Rv0654 0.63 -1.0 750,947 + Rv0654 0.63 -1.5 750,948 - Rv0654 0.63 +0.7 750,948 - Rv0654 0.63 -0.0 750,948 - Rv0654 0.63 -0.4 750,948 - Rv0654 0.63 +0.7 750,954 + Rv0654 0.63 +0.4 750,955 - Rv0654 0.63 -0.9 751,182 + Rv0654 0.78 +1.7 751,245 + Rv0654 0.83 -0.3 751,245 + Rv0654 0.83 +0.7 751,246 - Rv0654 0.83 +0.3 751,247 + Rv0654 0.83 -0.2 751,248 - Rv0654 0.83 -0.8 751,615 - -0.3 751,814 + Rv0655 0.28 -0.9 751,814 + Rv0655 0.28 -0.1 751,881 - Rv0655 0.34 -1.1 752,023 + Rv0655 0.47 +0.1 752,024 - Rv0655 0.47 -2.5 752,024 - Rv0655 0.47 +0.1 752,268 + Rv0655 0.70 -2.4 752,268 + Rv0655 0.70 -0.3 752,268 + Rv0655 0.70 -0.4 752,269 - Rv0655 0.70 -0.9
Or see this region's nucleotide sequence