Experiment: 7H9 with Econazole nitrate salt 0.0082 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0192A and Rv0193c are separated by 814 nucleotides Rv0193c and Rv0194 are separated by 306 nucleotides
Rv0192: Rv0192 - Conserved hypothetical protein, at 223,564 to 224,664
Rv0192
Rv0192A: Rv0192A - Conserved secreted protein, at 223,607 to 223,909
Rv0192A
Rv0193c: Rv0193c - Hypothetical protein, at 224,724 to 226,571
Rv0193c
Rv0194: Rv0194 - Probable transmembrane multidrug efflux pump, at 226,878 to 230,462
Rv0194
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 223.907 kb on + strand at 224.114 kb on - strand at 224.350 kb on + strand at 224.350 kb on + strand at 224.351 kb on - strand at 224.351 kb on - strand at 224.351 kb on - strand at 224.353 kb on + strand at 224.354 kb on - strand at 224.354 kb on - strand at 224.354 kb on - strand at 224.354 kb on - strand at 224.354 kb on - strand at 224.398 kb on + strand at 224.399 kb on - strand at 224.399 kb on - strand at 224.399 kb on - strand at 224.428 kb on + strand at 224.429 kb on - strand at 224.572 kb on + strand at 224.572 kb on + strand at 224.626 kb on + strand at 224.627 kb on - strand at 224.663 kb on - strand at 224.715 kb on - strand at 224.725 kb on + strand at 224.756 kb on - strand at 224.756 kb on - strand at 224.819 kb on - strand at 224.864 kb on - strand at 224.864 kb on - strand at 224.864 kb on - strand at 224.864 kb on - strand at 224.864 kb on - strand at 225.016 kb on - strand, within Rv0193c at 225.030 kb on + strand, within Rv0193c at 225.055 kb on - strand, within Rv0193c at 225.055 kb on - strand, within Rv0193c at 225.055 kb on - strand, within Rv0193c at 225.112 kb on + strand, within Rv0193c at 225.112 kb on + strand, within Rv0193c at 225.112 kb on + strand, within Rv0193c at 225.113 kb on - strand, within Rv0193c at 225.113 kb on - strand, within Rv0193c at 225.113 kb on - strand, within Rv0193c at 225.113 kb on - strand, within Rv0193c at 225.113 kb on - strand, within Rv0193c at 225.185 kb on - strand, within Rv0193c at 225.185 kb on - strand, within Rv0193c at 225.467 kb on + strand, within Rv0193c at 225.482 kb on - strand, within Rv0193c at 225.503 kb on + strand, within Rv0193c at 225.503 kb on + strand, within Rv0193c at 225.504 kb on - strand, within Rv0193c at 225.504 kb on - strand, within Rv0193c at 225.663 kb on + strand, within Rv0193c at 225.664 kb on - strand, within Rv0193c at 225.664 kb on - strand, within Rv0193c at 225.909 kb on - strand, within Rv0193c at 225.923 kb on - strand, within Rv0193c at 225.923 kb on - strand, within Rv0193c at 225.923 kb on - strand, within Rv0193c at 226.125 kb on + strand, within Rv0193c at 226.177 kb on + strand, within Rv0193c at 226.178 kb on - strand, within Rv0193c at 226.270 kb on - strand, within Rv0193c at 226.270 kb on - strand, within Rv0193c at 226.352 kb on - strand, within Rv0193c at 226.369 kb on - strand, within Rv0193c at 226.447 kb on + strand at 226.448 kb on - strand at 226.636 kb on - strand at 226.911 kb on + strand at 226.912 kb on - strand at 227.011 kb on + strand at 227.088 kb on + strand at 227.088 kb on + strand at 227.089 kb on - strand at 227.089 kb on - strand at 227.100 kb on + strand at 227.100 kb on + strand at 227.100 kb on + strand at 227.101 kb on - strand at 227.101 kb on - strand at 227.101 kb on - strand at 227.104 kb on + strand at 227.104 kb on + strand at 227.104 kb on + strand at 227.105 kb on - strand at 227.105 kb on - strand at 227.105 kb on - strand at 227.105 kb on - strand at 227.115 kb on + strand at 227.140 kb on + strand at 227.311 kb on + strand, within Rv0194 at 227.312 kb on - strand, within Rv0194 at 227.312 kb on - strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.314 kb on + strand, within Rv0194 at 227.315 kb on - strand, within Rv0194 at 227.315 kb on - strand, within Rv0194 at 227.315 kb on - strand, within Rv0194 at 227.563 kb on - strand, within Rv0194 at 227.563 kb on - strand, within Rv0194 at 227.563 kb on - strand, within Rv0194 at 227.563 kb on - strand, within Rv0194
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Econazole nitrate salt 0.0082 mM remove 223,907 + -2.9 224,114 - +0.2 224,350 + +1.0 224,350 + +0.5 224,351 - -0.3 224,351 - +1.7 224,351 - +0.7 224,353 + -0.4 224,354 - -0.0 224,354 - +0.6 224,354 - +0.2 224,354 - +0.7 224,354 - -0.2 224,398 + +0.5 224,399 - +3.4 224,399 - -0.4 224,399 - -0.2 224,428 + +0.7 224,429 - +1.1 224,572 + -0.1 224,572 + -0.8 224,626 + -0.6 224,627 - -0.2 224,663 - -0.4 224,715 - -0.2 224,725 + +0.0 224,756 - -0.4 224,756 - +0.9 224,819 - +0.0 224,864 - -1.1 224,864 - +0.1 224,864 - -0.6 224,864 - +2.7 224,864 - -0.1 225,016 - Rv0193c 0.16 +0.4 225,030 + Rv0193c 0.17 -0.1 225,055 - Rv0193c 0.18 -1.1 225,055 - Rv0193c 0.18 +1.5 225,055 - Rv0193c 0.18 -0.7 225,112 + Rv0193c 0.21 -0.3 225,112 + Rv0193c 0.21 +0.2 225,112 + Rv0193c 0.21 +0.6 225,113 - Rv0193c 0.21 -0.2 225,113 - Rv0193c 0.21 +0.9 225,113 - Rv0193c 0.21 +0.7 225,113 - Rv0193c 0.21 +0.7 225,113 - Rv0193c 0.21 -0.7 225,185 - Rv0193c 0.25 +0.1 225,185 - Rv0193c 0.25 -1.1 225,467 + Rv0193c 0.40 -0.2 225,482 - Rv0193c 0.41 +0.8 225,503 + Rv0193c 0.42 +1.0 225,503 + Rv0193c 0.42 +0.4 225,504 - Rv0193c 0.42 +0.1 225,504 - Rv0193c 0.42 +0.3 225,663 + Rv0193c 0.51 -0.2 225,664 - Rv0193c 0.51 -1.0 225,664 - Rv0193c 0.51 -0.6 225,909 - Rv0193c 0.64 +0.1 225,923 - Rv0193c 0.65 +0.0 225,923 - Rv0193c 0.65 +0.2 225,923 - Rv0193c 0.65 -0.4 226,125 + Rv0193c 0.76 -0.2 226,177 + Rv0193c 0.79 +1.1 226,178 - Rv0193c 0.79 +0.5 226,270 - Rv0193c 0.84 -0.9 226,270 - Rv0193c 0.84 +1.7 226,352 - Rv0193c 0.88 -1.2 226,369 - Rv0193c 0.89 -0.0 226,447 + -0.1 226,448 - -0.6 226,636 - -2.1 226,911 + -0.8 226,912 - +1.3 227,011 + -0.9 227,088 + -0.9 227,088 + +1.7 227,089 - +0.1 227,089 - -0.1 227,100 + -0.5 227,100 + +0.0 227,100 + +0.3 227,101 - +1.3 227,101 - -0.7 227,101 - +0.3 227,104 + -1.2 227,104 + -0.2 227,104 + -0.7 227,105 - +0.2 227,105 - +1.7 227,105 - -0.3 227,105 - +1.7 227,115 + +0.2 227,140 + -0.4 227,311 + Rv0194 0.12 -0.5 227,312 - Rv0194 0.12 -0.6 227,312 - Rv0194 0.12 +0.9 227,314 + Rv0194 0.12 -0.7 227,314 + Rv0194 0.12 -0.7 227,314 + Rv0194 0.12 +0.0 227,314 + Rv0194 0.12 +0.2 227,314 + Rv0194 0.12 -0.3 227,314 + Rv0194 0.12 -0.6 227,315 - Rv0194 0.12 +0.2 227,315 - Rv0194 0.12 -2.8 227,315 - Rv0194 0.12 -0.1 227,563 - Rv0194 0.19 -2.3 227,563 - Rv0194 0.19 -0.1 227,563 - Rv0194 0.19 +0.4 227,563 - Rv0194 0.19 -0.0
Or see this region's nucleotide sequence